MELO3C014949 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014949
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L4
Locationchr6 : 23525182 .. 23526616 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCGTTCGTTCGTGCGCTACCACCAAAGCTTCAATCAACCGTTTGGACACCACATCCGAGCTTAAGTCCATTCCGTTCTCTCTAAATGTGCGTCAATCGTGCGCTCCAATCATCTGCTTCACGTTATCGTCTGGAGATCGGAGACACATAAATTTTTCTCTCTTCTTATCTCACTTTCTGCTGCATCAAACCCTAAGCCCTCTCTTCACTCTCTTCTAGTTCTATCCGATCTTCAACGTTTGGCCCCTCCCCTCCGATCAGACGACGCCGGTGGCTGCCGGTCACCCTCTTCTAGATGACGCCGACGATTGTATCTCCGATTAGACCAGCCGTACTGGCCCTCCGTTTTGGTCTCGGTTTAAAGGTTTTTGCTCTTTTGTTTTCGTTCTTTTTTCTGTATCAATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATTTTATCAGAACCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAGAAGGTTGGTTGTTTTATTTTGTTTAGAATACAAACTATTTTTTGGCATGTGGGCTTTATTCATAATATGGATTGGATACATAAGTTAGCACATTCAACATTATACTGTGGTTACCTATTTATGAAAATAAGCAACAGTTTGGGAAGCTTTTGTGTTGTCTCTGGATAAGTTTTTTTCCCTTTCGTACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTTTCGTACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGAGTTCCCAATCGTTATACATTGCAGTTCTGTAGATTTCTGGTTCTCACATTCTTGTGATTATATTTTATATTTTGCAGGCCTTTTTCTATGTCGTTCATGATCTCTAGCTTTATTATGGAGCACTTTGGGCTGCTATAGGTTCCAATAAGTATTAGGTAAATCAATTGGATCCTTATTCTTAGTTTGGCTAGGAATGATTGTA

mRNA sequence

ATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCGTTCGTTCGTGCGCTACCACCAAAGCTTCAATCAACCGTTTGGACACCACATCCGAGCTTAAGTCCATTCCGTTCTCTCTAAATGTGCGTCAATCGTGCGCTCCAATCATCTGCTTCACGTTATCGTCTGGAGATCGGAGACACATAAATTTTTCTCTCTTCTTATCTCACTTTCTGCTGCATCAAACCCTAAGCCCTCTCTTCACTCTCTTCTAGTTCTATCCGATCTTCAACGTTTGGCCCCTCCCCTCCGATCAGACGACGCCGGTGGCTGCCGGTCACCCTCTTCTAGATGACGCCGACGATTGTATCTCCGATTAGACCAGCCGTACTGGCCCTCCGTTTTGGTCTCGGTTTAAAGGTTTTTGCTCTTTTGTTTTCGTTCTTTTTTCTGTATCAATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGAGTTCCCAATCGTTATACATTGCAGTTCTGTAGATTTCTGGTTCTCACATTCTTGTGATTATATTTTATATTTTGCAGGCCTTTTTCTATGTCGTTCATGATCTCTAGCTTTATTATGGAGCACTTTGGGCTGCTATAGGTTCCAATAAGTATTAGGTAAATCAATTGGATCCTTATTCTTAGTTTGGCTAGGAATGATTGTA

Coding sequence (CDS)

ATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGA

Protein sequence

MFEECFNWFDGTHTHMYMLIYSLLHIAMELLPPIVFLFGSSMQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLRAYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDVTMIYCDLVLM*
Homology
[Close]
BLAST of MELO3C014949 vs. TrEMBL
Match: A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQ  G+ GGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRMIVSK+N DA+EN Y+ ASKIVGVR+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]
BLAST of MELO3C014949 vs. TrEMBL
Match: B9R836_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1596510 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 65/141 (46.10%), Postives = 81/141 (57.45%), Query Frame = 1 

Query: 35  VFLFGSSMQSRGEAGGTSS---PENVRREILELEFPDDGYNYLLYLR------------- 94
           V   GSSM+  G A    +   PE+VR+EILEL FPDDGYNYLL+LR             
Sbjct: 82  VRFLGSSMKFGGGASSADAAPLPEHVRKEILELGFPDDGYNYLLHLREIKNTGGGSYYYR 141

Query: 95  --------------AYDASRMIVSKVNFD--ANENVYEAASKIVGVRIQNVVDLEIAALL 144
                         AYDASR+ VS+V  D   ++++Y  ASK VGV++Q V D E+AALL
Sbjct: 142 NPKASFDQLPHDVKAYDASRVRVSEVKRDDTNDKSIYSVASKTVGVKVQKVFDPEVAALL 201

[Close]
BLAST of MELO3C014949 vs. TrEMBL
Match: B9H4I8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25610g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 60/128 (46.88%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 46  GEAGGTSSPENVRREILELEFPDDGYNYLLYLR--------------------------- 105
           GE+     PE+VRREILEL FPDDGYNYLL+LR                           
Sbjct: 94  GESSSEPFPEDVRREILELGFPDDGYNYLLHLREIKSTVNGSGFFQNPKAKLNQLPHDVK 153

Query: 106 AYDASRMIVSKVNFD--ANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDVTM 145
           AYDASR+ VS++  +   ++++Y  ASK VGVR+Q  VD E+AALLDD DL RFGSDV  
Sbjct: 154 AYDASRLKVSELKSEDRNDKSIYHVASKSVGVRVQKAVDPEVAALLDDSDLSRFGSDVED 213

[Close]
BLAST of MELO3C014949 vs. TrEMBL
Match: K4BVI2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.6e-18
Identity = 57/108 (52.78%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 54  PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMI 113
           P+NVR+EILEL FPDDGYNYL +LR                           AYDASR+ 
Sbjct: 95  PDNVRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKLTELPRDVKAYDASRVA 154

Query: 114 VSKVNFDANEN-VYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSD 134
           V+KV+ D+NE  VY  A+K VGVR+Q  VD E+AALLDD DL RFGSD
Sbjct: 155 VAKVDDDSNEKYVYNVAAKTVGVRVQKAVDPEVAALLDDSDLSRFGSD 202

[Close]
BLAST of MELO3C014949 vs. TrEMBL
Match: K4BVI2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-11
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 

Query: 45  RGEAGGTSSPENVRREILELEFPDDGYNYLLYLRAYDASRMIVSKVNFDANEN-VYEAAS 104
           +   GG++  EN + ++ EL  P D       ++AYDASR+ V+KV+ D+NE  VY  A+
Sbjct: 122 KNTGGGSAYYENPKAKLTEL--PRD-------VKAYDASRVAVAKVDDDSNEKYVYNVAA 181

Query: 105 KIVGVRIQNVVDLEIAALLDDDDLLRFGSD 134
           K VGVR+Q  VD E+AALLDD DL RFGSD
Sbjct: 182 KTVGVRVQKAVDPEVAALLDDSDLSRFGSD 202


HSP 2 Score: 98.2 bits (243), Expect = 8.7e-18
Identity = 58/141 (41.13%), Postives = 76/141 (53.90%), Query Frame = 1 

Query: 37  LFGSSMQSRGEAGGTSSP-------ENVRREILELEFPDDGYNYLLYLR----------- 96
           +F  +     + GGTS P       E +R+EILEL FPDDGYNYL +LR           
Sbjct: 62  IFADAPDDNDDEGGTSRPAGTAQLPERIRKEILELGFPDDGYNYLTHLREIKNNGGGSAF 121

Query: 97  ----------------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALL 144
                           AYDASR+ +S+V  +  +++Y  ASK V V++Q  VD E+AALL
Sbjct: 122 YENPKSRLYQLPHDIKAYDASRVNISEVKNENEKSIYSVASKSVNVKVQRAVDPEVAALL 181

[Close]
BLAST of MELO3C014949 vs. TAIR10
Match: AT3G49990.1 (AT3G49990.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-09
Identity = 46/128 (35.94%), Postives = 61/128 (47.66%), Query Frame = 1 

Query: 51  TSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDAS 110
           +S P +VR+EILEL +PDDGYNYL +LR                           AYDAS
Sbjct: 83  SSLPAHVRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVKAYDAS 142

Query: 111 RMIVS-KVNFDANENVYEAASKIVGVRIQNV-------VDLEIAALLDDDDLLRFGSDVT 144
           R+ +S  VN + N+N       +  V  + V       +D E+AALL++ D   FGSDV 
Sbjct: 143 RVKISGMVNEEGNDN-----KLMYSVASKTVNVKVQKAIDPEVAALLENSDGSEFGSDVE 202

[Close]
BLAST of MELO3C014949 vs. NCBI nr
Match: gi|659095505|ref|XP_008448616.1| (PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 7.3e-34
Identity = 86/134 (64.18%), Postives = 95/134 (70.90%), Query Frame = 1 

Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQSRGE GGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRM+VSK+N DA+ENVY+ ASKIVG+R+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]
BLAST of MELO3C014949 vs. NCBI nr
Match: gi|449456741|ref|XP_004146107.1| (PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.4e-31
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQ  G+ GGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRMIVSK+N DA+EN Y+ ASKIVGVR+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]
BLAST of MELO3C014949 vs. NCBI nr
Match: gi|659072242|ref|XP_008464325.1| (PREDICTED: uncharacterized protein LOC103502235 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 9.5e-26
Identity = 70/102 (68.63%), Postives = 72/102 (70.59%), Query Frame = 1 

Query: 41  SMQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------- 100
           SMQSRGE GGTSS +NVRREILELEFPDDGYNYLLYLR                      
Sbjct: 6   SMQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 65

Query: 101 -----AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVD 116
                AYDASRMIVSKVNFDAN NVYEAASKIVGVR+QNVVD
Sbjct: 66  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 107

[Close]
BLAST of MELO3C014949 vs. NCBI nr
Match: gi|1021582383|ref|XP_016180583.1| (PREDICTED: protein LTV1 homolog [Arachis ipaensis])

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 65/144 (45.14%), Postives = 79/144 (54.86%), Query Frame = 1 

Query: 36  FLFGSSMQSR--------GEAGGTSSPENVRREILELEFPDDGYNYLLYLR--------- 95
           F F SS  S         G AG T  PE VRREILEL FPDDGYNYL++LR         
Sbjct: 79  FAFSSSTSSMPLGSHGFIGSAGTTPLPEEVRREILELGFPDDGYNYLIHLREIKNAGGGS 138

Query: 96  ------------------AYDASRMIVSKVNFDAN-ENVYEAASKIVGVRIQNVVDLEIA 144
                             AYDASR+ +S+V+ +   +++Y  ASK   VR+Q VVD E+A
Sbjct: 139 AYYQNPKFRVEDITLDVKAYDASRLQISEVDGEPEPDSIYSVASKTTTVRVQKVVDPEVA 198

[Close]
BLAST of MELO3C014949 vs. NCBI nr
Match: gi|255538828|ref|XP_002510479.1| (PREDICTED: protein LTV1 homolog isoform X2 [Ricinus communis])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 65/141 (46.10%), Postives = 81/141 (57.45%), Query Frame = 1 

Query: 35  VFLFGSSMQSRGEAGGTSS---PENVRREILELEFPDDGYNYLLYLR------------- 94
           V   GSSM+  G A    +   PE+VR+EILEL FPDDGYNYLL+LR             
Sbjct: 82  VRFLGSSMKFGGGASSADAAPLPEHVRKEILELGFPDDGYNYLLHLREIKNTGGGSYYYR 141

Query: 95  --------------AYDASRMIVSKVNFD--ANENVYEAASKIVGVRIQNVVDLEIAALL 144
                         AYDASR+ VS+V  D   ++++Y  ASK VGV++Q V D E+AALL
Sbjct: 142 NPKASFDQLPHDVKAYDASRVRVSEVKRDDTNDKSIYSVASKTVGVKVQKVFDPEVAALL 201

The following BLAST results are available for this feature:
BLAST of MELO3C014949 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L517_CUCSA2.3e-3161.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006680 PE=4 SV=1[more]
B9R836_RICCO1.3e-1846.10Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1596510 PE=4 SV=1[more]
B9H4I8_POPTR1.7e-1846.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25610g PE=4 SV=1[more]
K4BVI2_SOLLC6.6e-1852.78Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4BVI2_SOLLC2.7e-1150.00Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of MELO3C014949 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49990.13.9e-0935.94 unknown protein[more]
BLAST of MELO3C014949 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095505|ref|XP_008448616.1|7.3e-3464.18PREDICTED: protein LTV1 homolog isoform X1 [Cucumis melo][more]
gi|449456741|ref|XP_004146107.1|3.4e-3161.19PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus][more]
gi|659072242|ref|XP_008464325.1|9.5e-2668.63PREDICTED: uncharacterized protein LOC103502235 [Cucumis melo][more]
gi|1021582383|ref|XP_016180583.1|1.5e-1845.14PREDICTED: protein LTV1 homolog [Arachis ipaensis][more]
gi|255538828|ref|XP_002510479.1|1.9e-1846.10PREDICTED: protein LTV1 homolog isoform X2 [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014949T1MELO3C014949T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014949Cucumber (Chinese Long) v3cucmeB248
MELO3C014949Watermelon (97103) v2mewmbB427
MELO3C014949Wax gourdmewgoB500
MELO3C014949Cucumber (Gy14) v1cgymeB437
MELO3C014949Cucurbita maxima (Rimu)cmameB292
MELO3C014949Cucurbita maxima (Rimu)cmameB689
MELO3C014949Cucurbita moschata (Rifu)cmomeB285
MELO3C014949Cucurbita moschata (Rifu)cmomeB680
MELO3C014949Wild cucumber (PI 183967)cpimeB242
MELO3C014949Cucumber (Chinese Long) v2cumeB244
MELO3C014949Watermelon (Charleston Gray)mewcgB413
MELO3C014949Watermelon (Charleston Gray)mewcgB416
MELO3C014949Watermelon (97103) v1mewmB451
MELO3C014949Cucurbita pepo (Zucchini)cpemeB186
MELO3C014949Cucurbita pepo (Zucchini)cpemeB409
MELO3C014949Bottle gourd (USVL1VR-Ls)lsimeB380
MELO3C014949Cucumber (Gy14) v2cgybmeB211
MELO3C014949Silver-seed gourdcarmeB0923
MELO3C014949Silver-seed gourdcarmeB0991
MELO3C014949Watermelon (97103) v2mewmbB431