MELO3C014923 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014923
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-pro-like protein
Location	chr6 : 22868955 .. 22869350 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTATACAAAATCCTAATCCGATCACCCAACAGGAAAACCATATGAGTGATCCAATGTCTACTCTAATTATAGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAAAAGACCGGAATTTCTAGAAGAAAGATTACGCGCCATTGAAGGTGCAGATATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGAAACCACGTGCCCAAAAAGTCATCTAGCTATGTACTGTCGGAAAATGTCAGCTTACGCTCCCTTGATGATAAATTGTTGA

mRNA sequence

ATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTATACAAAATCCTAATCCGATCACCCAACAGGAAAACCATATGAGTGATCCAATGTCTACTCTAATTATAGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAAAAGACCGGAATTTCTAGAAGAAAGATTACGCGCCATTGAAGGTGCAGATATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGAAACCACGTGCCCAAAAAGTCATCTAGCTATGTACTGTCGGAAAATGTCAGCTTACGCTCCCTTGATGATAAATTGTTGA

Coding sequence (CDS)

ATGCCTGCATACCCTCCAGGTTTTACTCCGCAAAGGTCGTCTAGTCCTCGCATGACTTATCCTATACAAAATCCTAATCCGATCACCCAACAGGAAAACCATATGAGTGATCCAATGTCTACTCTAATTATAGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAAAAGACCGGAATTTCTAGAAGAAAGATTACGCGCCATTGAAGGTGCAGATATGTATGGGAGTATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCCAGATTTTGAGAAGTACAATGAAACCACGTGCCCAAAAAGTCATCTAGCTATGTACTGTCGGAAAATGTCAGCTTACGCTCCCTTGATGATAAATTGTTGA

Protein sequence

MPAYPPGFTPQRSSSPRMTYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLAMYCRKMSAYAPLMINC*

Homology

[Close]

BLAST of MELO3C014923 vs. TrEMBL
Match: A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 65/158 (41.14%), Postives = 86/158 (54.43%), Query Frame = 1


Query: 2   PAYPPGFTPQRSSS-----------PRMTYPIQNPNPITQQEN----HMSDPMSTLIIES 61
           P YPPGFTP  + +           P    PI  P    QQ        SDP+S   ++ 
Sbjct: 476 PVYPPGFTPPPARNVSIPMPSVGQYPFFRMPIGPPPTYAQQRPIGGASPSDPISVPDLDD 535

Query: 62  GKK----------ISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + K+ +  EERLR +EG  MY S+DA +LCL+ DVVIPPKF
Sbjct: 536 PKEQEKLKCGSVESKDNPDTHKKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKF 595

Query: 122 KTPDFEKYNETTCPKSHLAMYCRKMSAYA---PLMINC 132
           K PDFEKY+ T CP +H+ MYCR+M+AYA    L+I+C
Sbjct: 596 KVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHC 633

[Close]

BLAST of MELO3C014923 vs. TrEMBL
Match: A0A061E2I6_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao GN=TCM_007834 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 1


Query: 2   PAYPPGFTPQRSSSPRMTYP-------IQNPNPITQQENH-------------------M 61
           P YPPGFTP  + + +  +P          P P+  Q  H                   +
Sbjct: 61  PPYPPGFTPPHAQTSQRVHPQVMPSVYYNAPPPMGHQPTHGQFGQYPGINPIEPIHVPDL 120

Query: 62  SDPMST-LIIESGKKISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPP 121
            DP     + +   +  E +  +K+ + LEERLRAIEG D +G++DAT+LCL+ DV+IP 
Sbjct: 121 DDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFGTMDATELCLVPDVLIPA 180

Query: 122 KFKTPDFEKYNETTCPKSHLAMYCRKMSA 124
           KFK P+FEKY+ T CP +H+ MYCRKM+A
Sbjct: 181 KFKVPEFEKYDGTKCPMAHITMYCRKMAA 209

[Close]

BLAST of MELO3C014923 vs. TrEMBL
Match: A0A061FW77_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 66/158 (41.77%), Postives = 89/158 (56.33%), Query Frame = 1


Query: 2   PAYPPGFTPQ--RSSS---------PRMTYPIQNPNPITQQEN----HMSDPMSTLIIES 61
           P YPPGFTP   R++S         P    PI  P+   QQ        SDP+S   ++ 
Sbjct: 38  PVYPPGFTPPPARNASIPMPSVGQYPFFGMPIGPPSTYAQQRPIGGASPSDPISVPDLDD 97

Query: 62  GKK----------ISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + ++ +  EERLR +EG  MY S+DA +LCL+ DVVIPPKF
Sbjct: 98  PKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKF 157

Query: 122 KTPDFEKYNETTCPKSHLAMYCRKMSAYA---PLMINC 132
           K PDFEKY+ T CP +H+ MYCR+M+AYA    L+I+C
Sbjct: 158 KVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHC 195

[Close]

BLAST of MELO3C014923 vs. TrEMBL
Match: A0A061DM48_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-22
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 1


Query: 2   PAYPPGFTPQ--RSSS---------PRMTYPIQNPNPITQQEN----HMSDPMSTLIIES 61
           P YPPGFTP   R++S         P    PI  P    QQ        SDP+S   ++ 
Sbjct: 57  PVYPPGFTPPPARNASIPMPSMGQYPFFGMPIGPPPTYAQQRPIGGASPSDPISVPDLDD 116

Query: 62  GKK----------ISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + ++ +  EERLR +EG  MY S+DA +LCL+SDVVIPPKF
Sbjct: 117 PKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVSDVVIPPKF 176

Query: 122 KTPDFEKYNETTCPKSHLAMYCRKMSAYA---PLMINC 132
           K PDFEKY+ T CP +H+ MYCR+M AYA    L+I+C
Sbjct: 177 KVPDFEKYDGTKCPVTHITMYCRRMVAYAHDDKLLIHC 214

[Close]

BLAST of MELO3C014923 vs. TrEMBL
Match: A0A061EFF5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.9e-22
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1


Query: 2   PAYPPGFTPQRSSSPRMTYP-------IQNPNPITQQENH----------MSDPMSTLII 61
           P+YPP FTP  + + +  +P          P P+  Q  H           ++P+    +
Sbjct: 350 PSYPPRFTPPHAQTSQRVHPQVIPPVYYNAPTPLGHQPTHGQFGPYPGINPAEPIHVPYL 409

Query: 62  ESGKK----------ISEEQGSRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPP 121
           +  K+            E +  +K+ + LEERLRAIEG D +G++DAT+LCL+ DV+IP 
Sbjct: 410 DDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFGTMDATELCLVPDVLIPA 469

Query: 122 KFKTPDFEKYNETTCPKSHLAMYCRKMSA 124
           KFK P+FEKY+ T CP +H+ MYCRKM+A
Sbjct: 470 KFKVPEFEKYDGTKCPMAHITMYCRKMAA 498

[Close]

BLAST of MELO3C014923 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.0e-58
Identity = 116/134 (86.57%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 1   MPAYPPGFTPQRSSSPRMTYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQGSRKRP 60
           MPAYPPGFTPQRSSSPRMTY  QNPNPITQQENH+SDPMST I ESGKKI EEQGSRKR 
Sbjct: 56  MPAYPPGFTPQRSSSPRMTYSTQNPNPITQQENHVSDPMSTPITESGKKILEEQGSRKRL 115

Query: 61  EFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLAMYCRK 120
           EF+EERLRAIEGADMYGSIDATQLCLIS VVIPPKFKTP+FEKYN TTCPKSHL MYCRK
Sbjct: 116 EFVEERLRAIEGADMYGSIDATQLCLISYVVIPPKFKTPNFEKYNGTTCPKSHLVMYCRK 175

Query: 121 MSAYA---PLMINC 132
           MSAYA    L+I+C
Sbjct: 176 MSAYAYDDKLLIHC 189

[Close]

BLAST of MELO3C014923 vs. NCBI nr
Match: gi|659113185|ref|XP_008456442.1| (PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 2.3e-58
Identity = 116/134 (86.57%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 1   MPAYPPGFTPQRSSSPRMTYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQGSRKRP 60
           MPAYP GFTPQRSSSPRMTYP QNPNPI+QQENH+SDPMST I ES KKI EEQGSRKR 
Sbjct: 1   MPAYPLGFTPQRSSSPRMTYPTQNPNPISQQENHVSDPMSTPITESCKKILEEQGSRKRL 60

Query: 61  EFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLAMYCRK 120
           +FLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYN TTCPKSHL MYCRK
Sbjct: 61  KFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSHLIMYCRK 120

Query: 121 MSAYA---PLMINC 132
           MSAYA    L+I+C
Sbjct: 121 MSAYAHDDKLLIHC 134

[Close]

BLAST of MELO3C014923 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 8.6e-58
Identity = 114/134 (85.07%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MPAYPPGFTPQRSSSPRMTYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQGSRKRP 60
           MPAYP GFTPQRSSSPRMTYP QNPNPITQQ +H+SDPMST I +SGKKISEEQ SRKR 
Sbjct: 56  MPAYPIGFTPQRSSSPRMTYPTQNPNPITQQTDHVSDPMSTPITKSGKKISEEQSSRKRL 115

Query: 61  EFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLAMYCRK 120
           EFLEERLR IEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYN TTCPKSHL MYC+K
Sbjct: 116 EFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSHLVMYCQK 175

Query: 121 MSAYA---PLMINC 132
           MSAYA    L+I+C
Sbjct: 176 MSAYAHDDKLLIHC 189

[Close]

BLAST of MELO3C014923 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 1


Query: 1   MPAYPPGFTPQRSSSPRM---TYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQGSR 60
           M  YPPGFTPQ+SSSPR+   TYP QNPN  TQQ  H+SDP+STLI E GKKISEEQGSR
Sbjct: 56  MTTYPPGFTPQQSSSPRIVDRTYPTQNPNTTTQQAVHVSDPISTLITEGGKKISEEQGSR 115

Query: 61  KRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLAMY 120
           +R EFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYN TTCPKSHL MY
Sbjct: 116 RRMEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSHLVMY 175

Query: 121 CRKMSAYA---PLMINC 132
           CRKMSAYA    L+I C
Sbjct: 176 CRKMSAYAHDDKLLICC 192

[Close]

BLAST of MELO3C014923 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 6.4e-45
Identity = 97/130 (74.62%), Postives = 102/130 (78.46%), Query Frame = 1


Query: 3   AYPPGFTPQRSSSPRM-------TYPIQNPNPITQQENHMSDPMSTLIIESGKKISEEQG 62
           AYPP FTPQR SSPRM       ++P  NPN  TQQ  H+SD +ST I +SGKKISEEQG
Sbjct: 58  AYPPSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQG 117

Query: 63  SRKRPEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNETTCPKSHLA 122
           SRKR EFLEERL  IEG DMY SIDATQLCLISDVVIP KFK PDFEKYN TTCPKSHL 
Sbjct: 118 SRKRLEFLEERLCTIEGIDMYESIDATQLCLISDVVIPLKFKIPDFEKYNGTTCPKSHLV 177

Query: 123 MYCRKMSAYA 126
           MYCRKMS YA
Sbjct: 178 MYCRKMSTYA 187

The following BLAST results are available for this feature:

BLAST of MELO3C014923 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E8N3_THECC	2.4e-22	41.14	Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1	[more]
A0A061E2I6_THECC	3.1e-22	38.93	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A061FW77_THECC	3.1e-22	41.77	Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1	[more]
A0A061DM48_THECC	4.0e-22	42.41	Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1	[more]
A0A061EFF5_THECC	6.9e-22	38.26	Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1	[more]

BLAST of MELO3C014923 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093710\|ref\|XP_008447676.1\|	1.0e-58	86.57	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659113185\|ref\|XP_008456442.1\|	2.3e-58	86.57	PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	8.6e-58	85.07	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	2.6e-54	81.02	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659102853\|ref\|XP_008452348.1\|	6.4e-45	74.62	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014923T1	MELO3C014923T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014923	Cucumber (Chinese Long) v2	cumeB078
MELO3C014923	Cucumber (Chinese Long) v2	cumeB245
MELO3C014923	Watermelon (Charleston Gray)	mewcgB427
MELO3C014923	Watermelon (Charleston Gray)	mewcgB437
MELO3C014923	Watermelon (Charleston Gray)	mewcgB439
MELO3C014923	Watermelon (97103) v1	mewmB485
MELO3C014923	Watermelon (97103) v1	mewmB462
MELO3C014923	Watermelon (97103) v1	mewmB465
MELO3C014923	Cucurbita pepo (Zucchini)	cpemeB582
MELO3C014923	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014923	Bottle gourd (USVL1VR-Ls)	lsimeB443
MELO3C014923	Cucumber (Gy14) v2	cgybmeB213
MELO3C014923	Silver-seed gourd	carmeB0373
MELO3C014923	Silver-seed gourd	carmeB0444
MELO3C014923	Cucumber (Chinese Long) v3	cucmeB084
MELO3C014923	Cucumber (Chinese Long) v3	cucmeB250
MELO3C014923	Watermelon (97103) v2	mewmbB434
MELO3C014923	Watermelon (97103) v2	mewmbB438
MELO3C014923	Watermelon (97103) v2	mewmbB446
MELO3C014923	Melon (DHL92) v3.5.1	memeB112
MELO3C014923	Cucurbita maxima (Rimu)	cmameB137
MELO3C014923	Cucurbita maxima (Rimu)	cmameB237
MELO3C014923	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014923	Cucurbita moschata (Rifu)	cmomeB225
MELO3C014923	Wild cucumber (PI 183967)	cpimeB079
MELO3C014923	Wild cucumber (PI 183967)	cpimeB244