MELO3C014910 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014910
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUrb2/Npa2, putative isoform 4
Locationchr6 : 22620282 .. 22620638 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATACATGAGAACGTTGGTGAGATAATAAGCAAACACATCATAGCAGGGGTTAAGCACCCTCGTGGAACAAGACCTTTCCCTCAACTAATAAAAAAATTATGCTTAAAGGCATGTTCGGCGTTAGACAACCTTCCTCAGATAGGGGTAAAGGATGGGATTTGGTCCTCCGCAACTCTTTACCGTATAATTGCTATCAATAGGAACAAGGCTAAGCTAAAATACCTCAAAGCCAAACAAGATGGTAAGTCAGAGGTTAAAGAAGTGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATGATGTCCCCCTGAAACGCAAACGGCAAAGCGAGGATGAGGCCTCAAAATAA

mRNA sequence

ATGGAGGAGATACATGAGAACGTTGGTGAGATAATAAGCAAACACATCATAGCAGGGGTTAAGCACCCTCGTGGAACAAGACCTTTCCCTCAACTAATAAAAAAATTATGCTTAAAGGCATGTTCGGCGTTAGACAACCTTCCTCAGATAGGGGTAAAGGATGGGATTTGGTCCTCCGCAACTCTTTACCGTATAATTGCTATCAATAGGAACAAGGCTAAGCTAAAATACCTCAAAGCCAAACAAGATGGTAAGTCAGAGGTTAAAGAAGTGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATGATGTCCCCCTGAAACGCAAACGGCAAAGCGAGGATGAGGCCTCAAAATAA

Coding sequence (CDS)

ATGGAGGAGATACATGAGAACGTTGGTGAGATAATAAGCAAACACATCATAGCAGGGGTTAAGCACCCTCGTGGAACAAGACCTTTCCCTCAACTAATAAAAAAATTATGCTTAAAGGCATGTTCGGCGTTAGACAACCTTCCTCAGATAGGGGTAAAGGATGGGATTTGGTCCTCCGCAACTCTTTACCGTATAATTGCTATCAATAGGAACAAGGCTAAGCTAAAATACCTCAAAGCCAAACAAGATGGTAAGTCAGAGGTTAAAGAAGTGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATGATGTCCCCCTGAAACGCAAACGGCAAAGCGAGGATGAGGCCTCAAAATAA

Protein sequence

MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSATLYRIIAINRNKAKLKYLKAKQDGKSEVKEVDDKDEEEKEEDDVPLKRKRQSEDEASK*
Homology
[Close]
BLAST of MELO3C014910 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 1 

Query: 1   MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
           M++I  N+G+IIS HIIA VKHPRG RPF  LI++LCL+AC  L+ LPQ+ VKDGIW  +
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  TLYRIIAINRNKAKLKYLKAKQDGKSEVKEVDDKD-EEEKEEDDVPLKRKRQSEDE 116
           TL+RIIAI++NKAK+K LK K +G   VKE+DD D EEE ++D++P KRKRQ +++
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKED 172

[Close]
BLAST of MELO3C014910 vs. TrEMBL
Match: A0A0A0LHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.0e-13
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 1  MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
          M+EI  N+G+IIS+HI+A VK P+ TR F  LI KL LKAC AL+ LPQ+ V+DG+W+  
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 TLYRIIAINRNKAKLK 77
          TL+ II  ++N++K K
Sbjct: 71 TLHCIIRYSQNQSKDK 86

[Close]
BLAST of MELO3C014910 vs. TrEMBL
Match: A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 1 

Query: 1   MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
           MEEI  NVGEII KHI+A +KHP   RPF  LI+KLCLKAC       QI V+D +  S 
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKACLTKKE-SQIKVED-VDESN 185

Query: 61  TLYRIIAINRNKAKLKYLKAKQDGKSEVK--EVDDKDEEEKEEDDVPLKRKR 111
                   N  KA    L  K   + EV+  ++DD  +E KE   +  + KR
Sbjct: 186 EEEESEEDNSEKAT---LSPKVSLRREVRKDDIDDPLQEGKETTSMVDRDKR 232

[Close]
BLAST of MELO3C014910 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 1 

Query: 1   MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
           M++I  N+G+IIS HIIA VKHPRG RPF  LI++LCL+AC  L+ LPQ+ VKDGIW  +
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  TLYRIIAINRNKAKLKYLKAKQDGKSEVKEVDDKD-EEEKEEDDVPLKRKRQSEDE 116
           TL+RIIAI++NKAK+K LK K +G   VKE+DD D EEE ++D++P KRKRQ +++
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKED 172

[Close]
BLAST of MELO3C014910 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-20
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 44  LDNLPQIGVKDGIWSSATLYRIIAINRNKAKLKYLKAKQDGKSEVKEVDDKDEEEKEEDD 103
           LD L Q+ VKD I SS+TL+ IIAI++NKAKLK LK KQDGKS+VK VDD+DEEEKE+DD
Sbjct: 2   LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDD 61

Query: 104 VPLKRKRQSEDEA 117
           VPLKRKRQ E+EA
Sbjct: 62  VPLKRKRQGEEEA 74

[Close]
BLAST of MELO3C014910 vs. NCBI nr
Match: gi|700206371|gb|KGN61490.1| (hypothetical protein Csa_2G145890 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 1  MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
          M+EI  N+G+IIS+HI+A VK P+ TR F  LI KL LKAC AL+ LPQ+ V+DG+W+  
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 TLYRIIAINRNKAKLK 77
          TL+ II  ++N++K K
Sbjct: 71 TLHCIIRYSQNQSKDK 86

[Close]
BLAST of MELO3C014910 vs. NCBI nr
Match: gi|700202971|gb|KGN58104.1| (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 1 

Query: 1   MEEIHENVGEIISKHIIAGVKHPRGTRPFPQLIKKLCLKACSALDNLPQIGVKDGIWSSA 60
           MEEI  NVGEII KHI+A +KHP   RPF  LI+KLCLKAC       QI V+D +  S 
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKACLTKKE-SQIKVED-VDESN 185

Query: 61  TLYRIIAINRNKAKLKYLKAKQDGKSEVK--EVDDKDEEEKEEDDVPLKRKR 111
                   N  KA    L  K   + EV+  ++DD  +E KE   +  + KR
Sbjct: 186 EEEESEEDNSEKAT---LSPKVSLRREVRKDDIDDPLQEGKETTSMVDRDKR 232

The following BLAST results are available for this feature:
BLAST of MELO3C014910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA1.1e-2959.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
A0A0A0LHW9_CUCSA9.0e-1353.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1[more]
A0A0A0LAY9_CUCSA2.5e-0742.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1[more]
BLAST of MELO3C014910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202594|gb|KGN57727.1|1.5e-2959.48hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|659123193|ref|XP_008461541.1|4.9e-2073.97PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700206371|gb|KGN61490.1|1.3e-1253.95hypothetical protein Csa_2G145890 [Cucumis sativus][more]
gi|700202971|gb|KGN58104.1|3.6e-0742.86hypothetical protein Csa_3G511970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014910T1MELO3C014910T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014910Watermelon (97103) v2mewmbB434
MELO3C014910Watermelon (97103) v2mewmbB438
MELO3C014910Watermelon (97103) v2mewmbB446
MELO3C014910Watermelon (97103) v2mewmbB450
MELO3C014910Wax gourdmewgoB525
MELO3C014910Wax gourdmewgoB532
MELO3C014910Melon (DHL92) v3.5.1memeB053
MELO3C014910Melon (DHL92) v3.5.1memeB112
MELO3C014910Cucumber (Gy14) v1cgymeB037
MELO3C014910Cucumber (Gy14) v1cgymeB565
MELO3C014910Cucurbita maxima (Rimu)cmameB137
MELO3C014910Cucurbita maxima (Rimu)cmameB237
MELO3C014910Cucurbita maxima (Rimu)cmameB345
MELO3C014910Cucurbita moschata (Rifu)cmomeB129
MELO3C014910Cucurbita moschata (Rifu)cmomeB225
MELO3C014910Wild cucumber (PI 183967)cpimeB079
MELO3C014910Wild cucumber (PI 183967)cpimeB244
MELO3C014910Wild cucumber (PI 183967)cpimeB503
MELO3C014910Cucumber (Chinese Long) v2cumeB078
MELO3C014910Cucumber (Chinese Long) v2cumeB245
MELO3C014910Watermelon (Charleston Gray)mewcgB427
MELO3C014910Watermelon (Charleston Gray)mewcgB439
MELO3C014910Watermelon (Charleston Gray)mewcgB444
MELO3C014910Watermelon (97103) v1mewmB485
MELO3C014910Watermelon (97103) v1mewmB462
MELO3C014910Watermelon (97103) v1mewmB465
MELO3C014910Watermelon (97103) v1mewmB487
MELO3C014910Cucurbita pepo (Zucchini)cpemeB582
MELO3C014910Cucurbita pepo (Zucchini)cpemeB640
MELO3C014910Bottle gourd (USVL1VR-Ls)lsimeB032
MELO3C014910Bottle gourd (USVL1VR-Ls)lsimeB443
MELO3C014910Cucumber (Gy14) v2cgybmeB213
MELO3C014910Cucumber (Gy14) v2cgybmeB441
MELO3C014910Silver-seed gourdcarmeB0373
MELO3C014910Silver-seed gourdcarmeB0444
MELO3C014910Cucumber (Chinese Long) v3cucmeB084
MELO3C014910Cucumber (Chinese Long) v3cucmeB250
MELO3C014910Cucumber (Chinese Long) v3cucmeB513