MELO3C014887 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014887
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr6 : 21891087 .. 21891674 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTTTTTTCTTTGCTATTTTTGCAGACGCATCCTGCAGCAAAAAGACTCCTCAACAAGCCCTTCCCACATTATGACGAGTTATTGTACGTCTTCGGTAAATATCATGCGACAGAGGCCCGTGTAGAGATATTTGCGGACATCGAGTCGAACGTGCCAGGACCTAGAGACGTTGTCAAAGTAAATGATGGCCCAGATACGGAGTTCCTAGATATGTGCAACCCTAAGATGAACTTGTCGCAGGACGACATGATGACCGAACGATCTAGTAGGTCCAGCGATTGTAAGTCGGGTTCTAGCGATCAAAAGAGAAAGCACACATGTAGGCATTCGAGACTTATAACCTCATTTGGGACGCCATGGAAAGTGAGAATAATCAACTTAGGGCCATTGCAAAATGGCCAAATAAAGCTGGCCAGAAAGAAGACGCTATGCTGTAAGAGGTCCATTTCGAGCCTGAGTGTGGAGGGCCTCAGTAAATGCATGATGATAGTGGCGGAGAAGGTGTTGCTTATGAAAAGCTTCATCAAGATGCCCGATCTAATGAAGGCCACATACTACAGGGTCCTTCGTGATAACCCATGA

mRNA sequence

ATGTTTTTTTTTTCTTTGCTATTTTTGCAGACGCATCCTGCAGCAAAAAGACTCCTCAACAAGCCCTTCCCACATTATGACGAGTTATTGTACGTCTTCGGTAAATATCATGCGACAGAGGCCCGTGTAGAGATATTTGCGGACATCGAGTCGAACGTGCCAGGACCTAGAGACGTTGTCAAAGTAAATGATGGCCCAGATACGGAGTTCCTAGATATGTGCAACCCTAAGATGAACTTGTCGCAGGACGACATGATGACCGAACGATCTAGTAGGTCCAGCGATTGTAAGTCGGGTTCTAGCGATCAAAAGAGAAAGCACACATGTAGGCATTCGAGACTTATAACCTCATTTGGGACGCCATGGAAAGTGAGAATAATCAACTTAGGGCCATTGCAAAATGGCCAAATAAAGCTGGCCAGAAAGAAGACGCTATGCTGTAAGAGGTCCATTTCGAGCCTGAGTGTGGAGGGCCTCAGTAAATGCATGATGATAGTGGCGGAGAAGGTGTTGCTTATGAAAAGCTTCATCAAGATGCCCGATCTAATGAAGGCCACATACTACAGGGTCCTTCGTGATAACCCATGA

Coding sequence (CDS)

ATGTTTTTTTTTTCTTTGCTATTTTTGCAGACGCATCCTGCAGCAAAAAGACTCCTCAACAAGCCCTTCCCACATTATGACGAGTTATTGTACGTCTTCGGTAAATATCATGCGACAGAGGCCCGTGTAGAGATATTTGCGGACATCGAGTCGAACGTGCCAGGACCTAGAGACGTTGTCAAAGTAAATGATGGCCCAGATACGGAGTTCCTAGATATGTGCAACCCTAAGATGAACTTGTCGCAGGACGACATGATGACCGAACGATCTAGTAGGTCCAGCGATTGTAAGTCGGGTTCTAGCGATCAAAAGAGAAAGCACACATGTAGGCATTCGAGACTTATAACCTCATTTGGGACGCCATGGAAAGTGAGAATAATCAACTTAGGGCCATTGCAAAATGGCCAAATAAAGCTGGCCAGAAAGAAGACGCTATGCTGTAAGAGGTCCATTTCGAGCCTGAGTGTGGAGGGCCTCAGTAAATGCATGATGATAGTGGCGGAGAAGGTGTTGCTTATGAAAAGCTTCATCAAGATGCCCGATCTAATGAAGGCCACATACTACAGGGTCCTTCGTGATAACCCATGA

Protein sequence

MFFFSLLFLQTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTEFLDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHTCRHSRLITSFGTPWKVRIINLGPLQNGQIKLARKKTLCCKRSISSLSVEGLSKCMMIVAEKVLLMKSFIKMPDLMKATYYRVLRDNP*
Homology
[Close]
BLAST of MELO3C014887 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 73/191 (38.22%), Postives = 102/191 (53.40%), Query Frame = 1 

Query: 11  THPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTEF 70
           +HPAAK LLNK F HYDEL YVFGK  AT  R E FADI SN P   D    +  PDT+F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 71  LDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHTCRHS------RLITSFGTPWKV 130
             M +P +N+S DD+M  R++R S+ ++ SS  KRK     +      R    +G     
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 585

Query: 131 RIINLGPLQNGQIKLARKKTLCCKRSISSLSVEGLSKCMMIVAEKVLLMKSFIKMPDLMK 190
           RI     LQ       R++ +    +I  L++    + M I+   V  MK+F+++PD MK
Sbjct: 586 RIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMK 645

Query: 191 ATYYR-VLRDN 195
             Y   +L++N
Sbjct: 646 YPYCSLILQEN 656

[Close]
BLAST of MELO3C014887 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-20
Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = 1 

Query: 8   FLQTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPD 67
           +++T+PA K LLNK FPHY  L YVFGK H                  P   V   DG  
Sbjct: 55  WVRTYPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLK 114

Query: 68  TEFLDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHTCRHSRLITSFGTPWKVRII 127
            EF  MC+P+MNLS DDMM  +S R SDC+SG + +K     RH RL+TSF +PW +R+ 
Sbjct: 115 IEFPTMCSPRMNLSLDDMMVGQSGRFSDCRSGLTIKKESAIFRHLRLMTSFRSPWTLRMK 174

Query: 128 NLGPL 133
           +L PL
Sbjct: 175 SLRPL 179

[Close]
BLAST of MELO3C014887 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 8   FLQTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVP-GPRDVVKVNDGP 67
           ++++ PAAK LLN PFP+YDEL YVFG+  AT    E FAD+ SN P G  D   + DG 
Sbjct: 428 WVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG- 487

Query: 68  DTEFLDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRK 107
           + +F  + +  +++ QDD+   R SR+S+ K+GSS  KRK
Sbjct: 488 NEDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRK 526

[Close]
BLAST of MELO3C014887 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1 

Query: 10  QTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTE 69
           QTHPAAK LLNK FP+YDEL+YVF +   T   V+ F ++ESN P   +  +  D  D +
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 70  FLDMCNPKMNLS 82
              M +   N+S
Sbjct: 336 NPTMYSQGFNMS 347

[Close]
BLAST of MELO3C014887 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 73/191 (38.22%), Postives = 102/191 (53.40%), Query Frame = 1 

Query: 11  THPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTEF 70
           +HPAAK LLNK F HYDEL YVFGK  AT  R E FADI SN P   D    +  PDT+F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 71  LDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHTCRHS------RLITSFGTPWKV 130
             M +P +N+S DD+M  R++R S+ ++ SS  KRK     +      R    +G     
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 585

Query: 131 RIINLGPLQNGQIKLARKKTLCCKRSISSLSVEGLSKCMMIVAEKVLLMKSFIKMPDLMK 190
           RI     LQ       R++ +    +I  L++    + M I+   V  MK+F+++PD MK
Sbjct: 586 RIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMK 645

Query: 191 ATYYR-VLRDN 195
             Y   +L++N
Sbjct: 646 YPYCSLILQEN 656

[Close]
BLAST of MELO3C014887 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 71/190 (37.37%), Postives = 99/190 (52.11%), Query Frame = 1 

Query: 11  THPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTEF 70
           +HPAAK LLNK FPHYDEL YVF K HAT  R E FAD+ SN P   D    N   DT+F
Sbjct: 60  SHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDF 119

Query: 71  LDMCNPKMNLSQDDMMTERSSRSSDCK--SGSSDQKRKHTCRHS----RLITSFGTPWKV 130
             M +  +N+S D++M  R++R S+ +  S  S QKR  +   S    R    +G     
Sbjct: 120 QPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLN 179

Query: 131 RIINLGPLQNGQIKLARKKTLCCKRSISSLSVEGLSKCMMIVAEKVLLMKSFIKMPDLMK 190
           RI     LQ       R++ +    +I  L++    + M I+   V  MK+F+++PD MK
Sbjct: 180 RIAEWHVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHNVNDMKAFLEVPDNMK 239

Query: 191 ATYYRVLRDN 195
                +L +N
Sbjct: 240 PYCSIILEEN 249

[Close]
BLAST of MELO3C014887 vs. NCBI nr
Match: gi|700195822|gb|KGN50999.1| (hypothetical protein Csa_5G387990 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = 1 

Query: 8   FLQTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPD 67
           +++T+PA K LLNK FPHY  L YVFGK H                  P   V   DG  
Sbjct: 55  WVRTYPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLK 114

Query: 68  TEFLDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHTCRHSRLITSFGTPWKVRII 127
            EF  MC+P+MNLS DDMM  +S R SDC+SG + +K     RH RL+TSF +PW +R+ 
Sbjct: 115 IEFPTMCSPRMNLSLDDMMVGQSGRFSDCRSGLTIKKESAIFRHLRLMTSFRSPWTLRMK 174

Query: 128 NLGPL 133
           +L PL
Sbjct: 175 SLRPL 179

[Close]
BLAST of MELO3C014887 vs. NCBI nr
Match: gi|659118460|ref|XP_008459131.1| (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 6.2e-20
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 10  QTHPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTE 69
           ++HPAAK LLNK F HYDEL YVFGK  AT  R EIFADI SN P   D    +  PDT 
Sbjct: 101 ESHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTN 160

Query: 70  FLDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKHT 109
           F  M +P++N+S DD+M  R++R S+ ++ SS  +RKHT
Sbjct: 161 FSPMYSPRLNMSPDDLMETRTARVSERRNVSSGSRRKHT 199

[Close]
BLAST of MELO3C014887 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 6.4e-17
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1 

Query: 11  THPAAKRLLNKPFPHYDELLYVFGKYHATEARVEIFADIESNVPGPRDVVKVNDGPDTEF 70
           +HP AK LLNK F HYDEL YVFGK  AT  R E FADI SN P   D    +  PDT+F
Sbjct: 452 SHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTDF 511

Query: 71  LDMCNPKMNLSQDDMMTERSSRSSDCKSGSSDQKRKH 108
             M +  +N+S DD+M  R++R S+ ++ SS  KRKH
Sbjct: 512 PPMYSLGLNMSADDLMETRTARVSERRNVSSGSKRKH 548

The following BLAST results are available for this feature:
BLAST of MELO3C014887 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME1.7e-2138.22Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQ83_CUCSA3.3e-2045.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
E5GBB2_CUCME1.1e-1246.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME7.9e-0644.44Transposase OS=Cucumis melo PE=4 SV=1[more]
BLAST of MELO3C014887 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136287|gb|ADN34114.1|2.5e-2138.22retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659123900|ref|XP_008461893.1|1.2e-2037.37PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|700195822|gb|KGN50999.1|4.7e-2045.60hypothetical protein Csa_5G387990 [Cucumis sativus][more]
gi|659118460|ref|XP_008459131.1|6.2e-2053.54PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|6.4e-1751.55PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014887T1MELO3C014887T1mRNA