MELO3C014886 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014886
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA mismatch repair protein msh3
Locationchr6 : 21883961 .. 21884329 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCACAAGTCCTTTGTACTTTCGAAAAAAATCTGGGGCAATGAAGCAAAGAAGAAACCAAGGAAACAGAGTGAAAGCTAGCAATTCAGTGTCTATAAGCTCGCCAAGAGTGGATGTGGAAGCAGGGAAGCTTAAAGAGATTATTAACTATAATAATGTTGAGAGTAAGATTTTACCAGAGGAGTTTCTATCTGAATATCCATGGCTGAAAGCTTCTTTCATGGTGGAGAATGATAAGTTTCATTCAGAAGGGTTACTGCGCCTTGTTAGAGAAAGAATGCCATCAATTGGGAGTGAAGATTTGAAGATTTTCTTCAGCTTTTGTTTCTGGTTTATTCTGATTCCATATATTTTGGCTCATTGGTAG

mRNA sequence

ATGAGCACAAGTCCTTTGTACTTTCGAAAAAAATCTGGGGCAATGAAGCAAAGAAGAAACCAAGGAAACAGAGTGAAAGCTAGCAATTCAGTGTCTATAAGCTCGCCAAGAGTGGATGTGGAAGCAGGGAAGCTTAAAGAGATTATTAACTATAATAATGTTGAGAGTAAGATTTTACCAGAGGAGTTTCTATCTGAATATCCATGGCTGAAAGCTTCTTTCATGGTGGAGAATGATAAGTTTCATTCAGAAGGGTTACTGCGCCTTGTTAGAGAAAGAATGCCATCAATTGGGAGTGAAGATTTGAAGATTTTCTTCAGCTTTTGTTTCTGGTTTATTCTGATTCCATATATTTTGGCTCATTGGTAG

Coding sequence (CDS)

ATGAGCACAAGTCCTTTGTACTTTCGAAAAAAATCTGGGGCAATGAAGCAAAGAAGAAACCAAGGAAACAGAGTGAAAGCTAGCAATTCAGTGTCTATAAGCTCGCCAAGAGTGGATGTGGAAGCAGGGAAGCTTAAAGAGATTATTAACTATAATAATGTTGAGAGTAAGATTTTACCAGAGGAGTTTCTATCTGAATATCCATGGCTGAAAGCTTCTTTCATGGTGGAGAATGATAAGTTTCATTCAGAAGGGTTACTGCGCCTTGTTAGAGAAAGAATGCCATCAATTGGGAGTGAAGATTTGAAGATTTTCTTCAGCTTTTGTTTCTGGTTTATTCTGATTCCATATATTTTGGCTCATTGGTAG

Protein sequence

MSTSPLYFRKKSGAMKQRRNQGNRVKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKASFMVENDKFHSEGLLRLVRERMPSIGSEDLKIFFSFCFWFILIPYILAHW*
Homology
[Close]
BLAST of MELO3C014886 vs. TrEMBL
Match: A0A0A0K1N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044900 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 14  AMKQRRNQGNRVKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKAS 73
           A K+ R Q   VKASNSVSISSPRVDVEA KLKEI+N NNVESKILPEEFLSEYPWLKAS
Sbjct: 281 AKKKPRKQS--VKASNSVSISSPRVDVEARKLKEIVNNNNVESKILPEEFLSEYPWLKAS 340

Query: 74  FMVENDKFHSEGLLRLVRERMPSIGSEDLK 104
           F++ENDKF SE +LR VRERMP IGSE  K
Sbjct: 341 FLMENDKFRSEVVLRFVRERMPLIGSEKAK 368

[Close]
BLAST of MELO3C014886 vs. NCBI nr
Match: gi|659110758|ref|XP_008455395.1| (PREDICTED: mediator-associated protein 1-like [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-33
Identity = 79/90 (87.78%), Postives = 81/90 (90.00%), Query Frame = 1 

Query: 14  AMKQRRNQGNRVKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKAS 73
           A K+ R Q   VKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKAS
Sbjct: 279 AKKKPRKQS--VKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKAS 338

Query: 74  FMVENDKFHSEGLLRLVRERMPSIGSEDLK 104
           FMVENDKF SEGL+RLVRERMPSIGSE  K
Sbjct: 339 FMVENDKFRSEGLMRLVRERMPSIGSEKAK 366

[Close]
BLAST of MELO3C014886 vs. NCBI nr
Match: gi|778723876|ref|XP_011658715.1| (PREDICTED: mediator-associated protein 1-like [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-28
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 14  AMKQRRNQGNRVKASNSVSISSPRVDVEAGKLKEIINYNNVESKILPEEFLSEYPWLKAS 73
           A K+ R Q   VKASNSVSISSPRVDVEA KLKEI+N NNVESKILPEEFLSEYPWLKAS
Sbjct: 281 AKKKPRKQS--VKASNSVSISSPRVDVEARKLKEIVNNNNVESKILPEEFLSEYPWLKAS 340

Query: 74  FMVENDKFHSEGLLRLVRERMPSIGSEDLK 104
           F++ENDKF SE +LR VRERMP IGSE  K
Sbjct: 341 FLMENDKFRSEVVLRFVRERMPLIGSEKAK 368

The following BLAST results are available for this feature:
BLAST of MELO3C014886 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1N4_CUCSA2.1e-2878.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044900 PE=4 SV=1[more]
BLAST of MELO3C014886 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110758|ref|XP_008455395.1|2.3e-3387.78PREDICTED: mediator-associated protein 1-like [Cucumis melo][more]
gi|778723876|ref|XP_011658715.1|3.0e-2878.89PREDICTED: mediator-associated protein 1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014886T1MELO3C014886T1mRNA