MELO3C014880 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014880
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Rapamycin-insensitive companion of mTOR
Location	chr6 : 21717391 .. 21717636 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGGTCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

mRNA sequence

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGGTCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

Coding sequence (CDS)

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGGTCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

Protein sequence

MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQVRLQPPPSSPLALISKSHNNIPI*

Homology

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BLAST of MELO3C014880 vs. NCBI nr
Match: gi|659098586|ref|XP_008450213.1| (PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 1  MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ
Sbjct: 1  MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 58

The following BLAST results are available for this feature:

BLAST of MELO3C014880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098586\|ref\|XP_008450213.1\|	3.5e-25	100.00	PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014880T1	MELO3C014880T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014880	Silver-seed gourd	carmeB0373
MELO3C014880	Silver-seed gourd	carmeB0444
MELO3C014880	Cucumber (Chinese Long) v3	cucmeB084
MELO3C014880	Cucumber (Chinese Long) v3	cucmeB250
MELO3C014880	Watermelon (97103) v2	mewmbB434
MELO3C014880	Watermelon (97103) v2	mewmbB446
MELO3C014880	Wax gourd	mewgoB532
MELO3C014880	Melon (DHL92) v3.5.1	memeB112
MELO3C014880	Cucumber (Gy14) v1	cgymeB037
MELO3C014880	Cucurbita maxima (Rimu)	cmameB137
MELO3C014880	Cucurbita maxima (Rimu)	cmameB237
MELO3C014880	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014880	Cucurbita moschata (Rifu)	cmomeB225
MELO3C014880	Wild cucumber (PI 183967)	cpimeB079
MELO3C014880	Wild cucumber (PI 183967)	cpimeB244
MELO3C014880	Cucumber (Chinese Long) v2	cumeB078
MELO3C014880	Cucumber (Chinese Long) v2	cumeB245
MELO3C014880	Watermelon (Charleston Gray)	mewcgB427
MELO3C014880	Watermelon (Charleston Gray)	mewcgB439
MELO3C014880	Watermelon (97103) v1	mewmB485
MELO3C014880	Watermelon (97103) v1	mewmB462
MELO3C014880	Cucurbita pepo (Zucchini)	cpemeB582
MELO3C014880	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014880	Bottle gourd (USVL1VR-Ls)	lsimeB421
MELO3C014880	Bottle gourd (USVL1VR-Ls)	lsimeB443
MELO3C014880	Cucumber (Gy14) v2	cgybmeB213