MELO3C014851 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014851
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-binding protein, possibly exosome complex Ribosomal RNA processing protein
Locationchr6 : 21125913 .. 21126133 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAGAGTTTACCACAATAACCCGATCCAGATCAAGATCGTCCGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCAAGGCCTTCGGCCAATCTTATCCGTCTTTCTGATGGAGTCGTTCAAATGAGGCCTCATGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCATACTGTCACCCCTGATAAACG

mRNA sequence

ATGGATTTAGAGTTTACCACAATAACCCGATCCAGATCAAGATCGTCCGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCAAGGCCTTCGGCCAATCTTATCCGTCTTTCTGATGGAGTCGTTCAAATGAGGCCTCATGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCATACTGTCACCCCTGATAAACG

Coding sequence (CDS)

ATGGATTTAGAGTTTACCACAATAACCCGATCCAGATCAAGATCGTCCGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCAAGGCCTTCGGCCAATCTTATCCGTCTTTCTGATGGAGTCGTTCAAATGAGGCCTCATGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCATACTGTCACCCCTGATAAACG

Protein sequence

MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDK
Homology
[Close]
BLAST of MELO3C014851 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-23
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1   MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST 60
           MDL FT +TRSRSR S I IGSPTESSTPPRPS NLIR S GV+QMRP ASPSSNRESST
Sbjct: 40  MDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESST 99

Query: 61  PPTTYSHTVTPDK 74
           PPTTYS  VT DK
Sbjct: 100 PPTTYSQAVTLDK 112

[Close]
BLAST of MELO3C014851 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-14
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1   MDLEFTTITRSRSRSSGIRIG-SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESS 60
           M+L FTT+T SR+RSS I+IG + TESSTPPRPS NLIR S  V+Q RP AS  SNR+SS
Sbjct: 42  MNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS 101

Query: 61  TPPTTYS 67
            PPTTYS
Sbjct: 102 PPPTTYS 108

[Close]
BLAST of MELO3C014851 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1   MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST 60
           MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST
Sbjct: 40  MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST 99

Query: 61  PPTTYSHTVTPDK 74
           PPTTYSHTVTPDK
Sbjct: 100 PPTTYSHTVTPDK 112

[Close]
BLAST of MELO3C014851 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-23
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1   MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST 60
           MDL FT +TRSRSR S I IGSPTESSTPPRPS NLIR S GV+QMRP ASPSSNRESST
Sbjct: 40  MDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESST 99

Query: 61  PPTTYSHTVTPDK 74
           PPTTYS  VT DK
Sbjct: 100 PPTTYSQAVTLDK 112

[Close]
BLAST of MELO3C014851 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-14
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1   MDLEFTTITRSRSRSSGIRIG-SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESS 60
           M+L FTT+T SR+RSS I+IG + TESSTPPRPS NLIR S  V+Q RP AS  SNR+SS
Sbjct: 42  MNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS 101

Query: 61  TPPTTYS 67
            PPTTYS
Sbjct: 102 PPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C014851 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME3.5e-2380.82Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA2.9e-1468.66Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C014851 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|5.3e-33100.00PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|5.0e-2380.82hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|4.2e-1468.66hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014851T1MELO3C014851T1mRNA