MELO3C014844 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014844
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr6 : 21009359 .. 21009631 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTGCATTGGCCATCACTGACGATGGTGTTTCGGGTAGGGGAGAAAAAGGTTAAGCTCAAAGGAGATCCATCACTCCTTAAGGCAGAATGCTCCCTGAGGACCCTAGAGAAAATGTGGGAATCTGAAGATCAGGGGTTCCTACTTGAGTGGCGAAATTATGAGACTGACAATGAAGATGAGCACGAAGAAGAGCAGTGTCTGAAAGGAGAAGAGGAGGAATTGCCAATGATAAAGTACTTGTTAAACCAGTATGCAGATCTTTTTTAA

mRNA sequence

ATGAAGGTGCATTGGCCATCACTGACGATGGTGTTTCGGGTAGGGGAGAAAAAGGTTAAGCTCAAAGGAGATCCATCACTCCTTAAGGCAGAATGCTCCCTGAGGACCCTAGAGAAAATGTGGGAATCTGAAGATCAGGGGTTCCTACTTGAGTGGCGAAATTATGAGACTGACAATGAAGATGAGCACGAAGAAGAGCAGTGTCTGAAAGGAGAAGAGGAGGAATTGCCAATGATAAAGTACTTGTTAAACCAGTATGCAGATCTTTTTTAA

Coding sequence (CDS)

ATGAAGGTGCATTGGCCATCACTGACGATGGTGTTTCGGGTAGGGGAGAAAAAGGTTAAGCTCAAAGGAGATCCATCACTCCTTAAGGCAGAATGCTCCCTGAGGACCCTAGAGAAAATGTGGGAATCTGAAGATCAGGGGTTCCTACTTGAGTGGCGAAATTATGAGACTGACAATGAAGATGAGCACGAAGAAGAGCAGTGTCTGAAAGGAGAAGAGGAGGAATTGCCAATGATAAAGTACTTGTTAAACCAGTATGCAGATCTTTTTTAA

Protein sequence

MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNEDEHEEEQCLKGEEEELPMIKYLLNQYADLF*
Homology
[Close]
BLAST of MELO3C014844 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1   MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNE 60
           MKVHWPSLTM F+VGEK++ LKGDP+L+KAECSL+TL K WE +DQGFLL ++NYET+ E
Sbjct: 218 MKVHWPSLTMTFQVGEKQITLKGDPTLIKAECSLKTLGKTWEDDDQGFLLGFQNYETEVE 277

Query: 61  DEHEEEQCLKGEEEELPMIKYLLNQYADLF 91
           +E++EEQ +KG+EE LP+IK LL QY  +F
Sbjct: 278 NEYKEEQEVKGDEENLPLIKALLRQYGVIF 307

[Close]
BLAST of MELO3C014844 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-27
Identity = 58/90 (64.44%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNE 60
           MK+HWPSLTM FR+G+K+  LKGDPSL++AECSL+T+EK WE +DQGFLLE +NYE + +
Sbjct: 483 MKIHWPSLTMTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQNYEAEED 542

Query: 61  DEHEEEQCLKGEEEELPMIKYLLNQYADLF 91
            E +E Q +KG+EEE PMI+ LL QY DLF
Sbjct: 543 GELDEVQRVKGDEEESPMIQVLLQQYTDLF 572

[Close]
BLAST of MELO3C014844 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-27
Identity = 57/90 (63.33%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 1   MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNE 60
           MK+HWPSLTMVF     KV LKGDP+L++AECSL+TLEK WE EDQGFL++W++YET+NE
Sbjct: 455 MKIHWPSLTMVFWKEGNKVVLKGDPALIRAECSLKTLEKTWEDEDQGFLIDWQDYETENE 514

Query: 61  DEHEEEQCLKGEEEELPMIKYLLNQYADLF 91
            +  +    +G+EEELPMI++LLNQY+D+F
Sbjct: 515 YKESKTPGQQGDEEELPMIQFLLNQYSDVF 544

[Close]
BLAST of MELO3C014844 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 1 

Query: 1   MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNE 60
           MK+HWPSLTM F  G +++ LKGDPSL++AECSLRTLEK W+ +DQGFLLEW N E + E
Sbjct: 426 MKIHWPSLTMSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETE 485

Query: 61  DEHEEEQCLKGEEEELPMIKYLLNQYADLF 91
           D ++ ++  KG+E ++PMI++LL QY D+F
Sbjct: 486 DTYKTDKKEKGDEADIPMIRFLLQQYTDIF 515

[Close]
BLAST of MELO3C014844 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-25
Identity = 51/90 (56.67%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MKVHWPSLTMVFRVGEKKVKLKGDPSLLKAECSLRTLEKMWESEDQGFLLEWRNYETDNE 60
           M++HWPSLTM F    +++ LKGDPSL+KAECSL+T+EK WE +D+GFLLEW N+E   +
Sbjct: 257 MRIHWPSLTMTFWNEGRQIVLKGDPSLIKAECSLKTIEKTWEDDDRGFLLEWTNFEMTAD 316

Query: 61  DEHEEEQCLKGEEEELPMIKYLLNQYADLF 91
           D +E+ Q ++G+E ++PMI++LL+QYAD+F
Sbjct: 317 DGYEKNQEMRGDEADIPMIRFLLHQYADIF 346

The following BLAST results are available for this feature:
BLAST of MELO3C014844 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778726094|ref|XP_011659055.1|3.7e-2866.67PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|778697580|ref|XP_011654353.1|2.4e-2764.44PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659093726|ref|XP_008447685.1|4.1e-2763.33PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|659094491|ref|XP_008448087.1|1.7e-2558.89PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|659109624|ref|XP_008454797.1|3.9e-2556.67PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014844T1MELO3C014844T1mRNA