MELO3C014831 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014831
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Bifunctional protein Aas
Location	chr6 : 20797650 .. 20797919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

mRNA sequence

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

Coding sequence (CDS)

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

Protein sequence

MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETETEVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR*

Homology

[Close]

BLAST of MELO3C014831 vs. TrEMBL
Match: E5GCG0_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1   MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETET-------- 60
           MRRRAAGRRQTR DEGRT ASG +  RGRSEMVRPRR +VGVAKP+TTET+T        
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  -EVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
            + +   + +   +E+ WRDGG V   K KTK+++  R
Sbjct: 283 GDGDRGGDGDACERER-WRDGG-VKMKKEKTKRKRRVR 318

[Close]

BLAST of MELO3C014831 vs. NCBI nr
Match: gi|307136344|gb|ADN34159.1| (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1   MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETET-------- 60
           MRRRAAGRRQTR DEGRT ASG +  RGRSEMVRPRR +VGVAKP+TTET+T        
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  -EVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
            + +   + +   +E+ WRDGG V   K KTK+++  R
Sbjct: 283 GDGDRGGDGDACERER-WRDGG-VKMKKEKTKRKRRVR 318

The following BLAST results are available for this feature:

BLAST of MELO3C014831 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCG0_CUCME	1.7e-16	55.10	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C014831 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136344\|gb\|ADN34159.1\|	2.5e-16	55.10	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014831T1	MELO3C014831T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014831	Silver-seed gourd	carmeB0373
MELO3C014831	Silver-seed gourd	carmeB0444
MELO3C014831	Cucumber (Chinese Long) v3	cucmeB250
MELO3C014831	Watermelon (97103) v2	mewmbB434
MELO3C014831	Wax gourd	mewgoB532
MELO3C014831	Cucumber (Gy14) v1	cgymeB260
MELO3C014831	Cucurbita maxima (Rimu)	cmameB137
MELO3C014831	Cucurbita maxima (Rimu)	cmameB237
MELO3C014831	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014831	Cucurbita moschata (Rifu)	cmomeB225
MELO3C014831	Wild cucumber (PI 183967)	cpimeB244
MELO3C014831	Cucumber (Chinese Long) v2	cumeB245
MELO3C014831	Watermelon (Charleston Gray)	mewcgB427
MELO3C014831	Watermelon (97103) v1	mewmB464
MELO3C014831	Cucurbita pepo (Zucchini)	cpemeB582
MELO3C014831	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014831	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C014831	Cucumber (Gy14) v2	cgybmeB213