MELO3C014822 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014822
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	tRNA pseudouridine synthase
Location	chr6 : 20604098 .. 20604538 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACAACATCTCGAGTCTCCCCGCAATCCCAAAAATCCAAACCCACAAAATCTAAATCACCACCACCCATCGAAAAGTTGACTACCACTTCCTCACCAAAGCACAAAACTAATAAAAAATGTGTCCTTATTTTGTTTTATTTAGCTGGAACCTCCCTCCCATGTCAAGAGGAAACTCCTCAACCTCTTGACGCAATCCCTATCAACCAAGCCAAACCACCAAGCCCTGAAACTTCAAATCAGGATGTTTTCCATGAAACCTTCTATGTCCCAACAACATTATTAGATGATGCGACCAAAGAGTCTGAGGAAGGAGGAAAAGGAAAGGAAGTTCTAGAGGAGGCTATTGATGACCCACTCCAAAGGGAAAAGGAAGTATTCCCTAGTGAGAAAAGCCTCCACTCAAAGCCAAAATCAATTCCAGAAGCCCTAACGTGA

mRNA sequence

ATGCCAACAACATCTCGAGTCTCCCCGCAATCCCAAAAATCCAAACCCACAAAATCTAAATCACCACCACCCATCGAAAAGTTGACTACCACTTCCTCACCAAAGCACAAAACTAATAAAAAATGTGTCCTTATTTTGTTTTATTTAGCTGGAACCTCCCTCCCATGTCAAGAGGAAACTCCTCAACCTCTTGACGCAATCCCTATCAACCAAGCCAAACCACCAAGCCCTGAAACTTCAAATCAGGATGTTTTCCATGAAACCTTCTATGTCCCAACAACATTATTAGATGATGCGACCAAAGAGTCTGAGGAAGGAGGAAAAGGAAAGGAAGTTCTAGAGGAGGCTATTGATGACCCACTCCAAAGGGAAAAGGAAGTATTCCCTAGTGAGAAAAGCCTCCACTCAAAGCCAAAATCAATTCCAGAAGCCCTAACGTGA

Coding sequence (CDS)

ATGCCAACAACATCTCGAGTCTCCCCGCAATCCCAAAAATCCAAACCCACAAAATCTAAATCACCACCACCCATCGAAAAGTTGACTACCACTTCCTCACCAAAGCACAAAACTAATAAAAAATGTGTCCTTATTTTGTTTTATTTAGCTGGAACCTCCCTCCCATGTCAAGAGGAAACTCCTCAACCTCTTGACGCAATCCCTATCAACCAAGCCAAACCACCAAGCCCTGAAACTTCAAATCAGGATGTTTTCCATGAAACCTTCTATGTCCCAACAACATTATTAGATGATGCGACCAAAGAGTCTGAGGAAGGAGGAAAAGGAAAGGAAGTTCTAGAGGAGGCTATTGATGACCCACTCCAAAGGGAAAAGGAAGTATTCCCTAGTGAGAAAAGCCTCCACTCAAAGCCAAAATCAATTCCAGAAGCCCTAACGTGA

Protein sequence

MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDPLQREKEVFPSEKSLHSKPKSIPEALT*

Homology

[Close]

BLAST of MELO3C014822 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.9e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60
           MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET
Sbjct: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60

Query: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP 120
           PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP
Sbjct: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP 120

Query: 121 LQREKEVFPSEKSLHSKPKSIPEALT 147
           LQREKEVFPSEKSLHSKPKSIPEALT
Sbjct: 121 LQREKEVFPSEKSLHSKPKSIPEALT 146

[Close]

BLAST of MELO3C014822 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60
           MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET
Sbjct: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60

Query: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP 120
           PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP
Sbjct: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGGKGKEVLEEAIDDP 120

Query: 121 LQREKEVFPSEKSLHSKPKSIPEALT 147
           LQREKEVFPSEKSLHSKPKSIPEALT
Sbjct: 121 LQREKEVFPSEKSLHSKPKSIPEALT 146

The following BLAST results are available for this feature:

BLAST of MELO3C014822 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCD9_CUCME	9.9e-78	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C014822 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136315\|gb\|ADN34138.1\|	1.4e-77	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014822T1	MELO3C014822T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014822	Silver-seed gourd	carmeB0373
MELO3C014822	Cucumber (Chinese Long) v3	cucmeB250
MELO3C014822	Watermelon (97103) v2	mewmbB434
MELO3C014822	Wax gourd	mewgoB532
MELO3C014822	Cucumber (Gy14) v1	cgymeB260
MELO3C014822	Cucurbita maxima (Rimu)	cmameB137
MELO3C014822	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014822	Wild cucumber (PI 183967)	cpimeB244
MELO3C014822	Cucumber (Chinese Long) v2	cumeB245
MELO3C014822	Watermelon (Charleston Gray)	mewcgB427
MELO3C014822	Watermelon (97103) v1	mewmB464
MELO3C014822	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014822	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C014822	Cucumber (Gy14) v2	cgybmeB213