MELO3C014813 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014813
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Light-regulated protein
Location	chr6 : 20407251 .. 20408990 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCCGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTTCCCAGCTCAACACTTTCCAATAGTAGCCATTCTCATTTCCCTTTCATCACATTTGGTTCTAACTCATCACGTCCCTCGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACACATCTGTAGTTGATTATAGCTCTGCTATCTCGTAAGTTATTTTCTCTTGCAACCTTAGCTTCTGTTTTGTATTGAAATTAAATTTGAAGCACTACACCAAACTCCTCGATTAAGTTATATCTTTCCATATTGGATCTTGACCTTTAAATTATACATCATTTAATACATAAGTGAAACTACTCGGACTCATTTGACATCTTTTAACTGCAAGAAATTATTAAATACAAAATTGAAAATCATTAACTTAATTATTAGACAAATATGAAAACTTATGGTTTTGATGGTGCCATAAAATGTGAATAAAAGTGTATTCTTGTAATCTACGAGGTTTTAAACGTTGTTGTTGACGAAAATATCAAAGTTTCAATTATGTGGAAATATTAAAAGATAATATTAAAAAATATAAAGTGTGAATAAACATTACCGTTTTAAAATAAGTTTAAATATCGGAGAAAACATCCATTTTCACTCTAAACTTACTCAAAGTTTTATCCTCCTAACTCATAATTCAATTTTAACTGATTCATTCATTAATCGTAAATTATTTTTACTCATAGTTGCAATGAAATAATTTATAAAAGAAAAAGTTTGACCAATGTCAGAATTCATAAATTTCAAAAATTAAAAGAATCTCTCACGTTGTCTTTCTCTAAGGAAATTATCGACTTCATATACATATTGTATGATTTTATTATTTTATATGTATGAAACAACTTTTTTCTATTGATATTTAATTAGAAGTGAGAATTTATTACTTAAAAATCTCTATAATCTAAAATGGATACAATCTGACAAATTTGGAGTTAAAATGGATCTTTTTTCCAATGTTTTATCGTTAACATAATTAGGTTTAAAAGAAAATTTTATATTTTTGGTTGTATAATTCCATCATTGGTATGTTATAATGAAAATATTTGATTATGTCTTATGGTGATGTCAAACTTATCAAAAACATAAAAATATGATGAAGATTTAATAAATTTAAGTTGGTTGAATTCATAGTTTTAAATTTTCACCGGCATCTTGATACACATATATATATATATATTTTTCTGTTTTAACAAATTTGATGAGAAGATGAGGAATGAAATGATGTTATTTTTTTTTTAATTTCTTTATGGTATGAAGGTGGATATTTTAAGAATATTTTGATGAAGGTTGTATATGGTATGAGAACAGGGTGTTTCCAGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGCAAATATGTTTCCAGAAGTAAGGCTTCAGCCTTCACTTAACAATAATCAAAACCCCGCCGTTGCAAATTTGGAGGAGATTGATAGAGAGTATCTTGATTATGCCGCCGATTCAAAGACGTAACTCACTTATTTTTTCCTTTTCTTTTTCATTATCCTCCAAACTTCGAACCATATTATAATATAATCATCTATATGAACAACAATCCTTTTATTATTTCAATATTCAAAATCTAACTCACATCACAACAATATCTTTATCATGTATTTCAAAATGCAGTGTTTTCCGAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCTGAGTTCCTAAATGGGGTTTTCTAG

mRNA sequence

ATGCAGGCCGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTTCCCAGCTCAACACTTTCCAATAGTAGCCATTCTCATTTCCCTTTCATCACATTTGGTTCTAACTCATCACGTCCCTCGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACACATCTGTAGTTGATTATAGCTCTGCTATCTCGGTGTTTCCAGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGCAAATATGTTTCCAGAAGTAAGGCTTCAGCCTTCACTTAACAATAATCAAAACCCCGCCGTTGCAAATTTGGAGGAGATTGATAGAGAGTATCTTGATTATGCCGCCGATTCAAAGACTGTTTTCCGAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCTGAGTTCCTAAATGGGGTTTTCTAG

Coding sequence (CDS)

ATGCAGGCCGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTTCCCAGCTCAACACTTTCCAATAGTAGCCATTCTCATTTCCCTTTCATCACATTTGGTTCTAACTCATCACGTCCCTCGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACACATCTGTAGTTGATTATAGCTCTGCTATCTCGGTGTTTCCAGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGCAAATATGTTTCCAGAAGTAAGGCTTCAGCCTTCACTTAACAATAATCAAAACCCCGCCGTTGCAAATTTGGAGGAGATTGATAGAGAGTATCTTGATTATGCCGCCGATTCAAAGACTGTTTTCCGAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCTGAGTTCCTAAATGGGGTTTTCTAG

Protein sequence

MQAAVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRGEACDDLGGEFCEAEFLNGVF*

Homology

[Close]

BLAST of MELO3C014813 vs. Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 44  ATASVVYDTSVVDYSSAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANL 103
           A A+V  + + VDYSS ISVFP EAC+ IGGEAC    M+PE +L  S     + A A  
Sbjct: 39  AAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACN-VQMYPEAKLSSSAAVAVSRAAA-- 98

Query: 104 EEIDREYLDYAADSKTVFRGEACDDLGGEFCEA 137
           EE+DR+YL Y  +  TVF  EACDDLGGEFC+A
Sbjct: 99  EEVDRDYLSY-DEPTTVFPEEACDDLGGEFCKA 127

HSP 2 Score: 36.6 bits (83), Expect = 2.8e-01
Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 1


Query: 35  NSSRPSAIKATASVVYDTSVVDYSSAISVFPAEACETIGGEAC 78
           +SS   A+   A+   D   + Y    +VFP EAC+ +GGE C
Sbjct: 83  SSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFC 125

[Close]

BLAST of MELO3C014813 vs. TrEMBL
Match: A0A0A0L8G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-56
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 4   AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISV 63
           AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISV
Sbjct: 20  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISV 79

Query: 64  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 123
           FPAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ EEIDREYLDY ADSKTVF G
Sbjct: 80  FPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASSEEIDREYLDY-ADSKTVFPG 139

Query: 124 EACDDLGGEFCEAEFLNGVF 144
           EACDDLGGEFCE EFLNGVF
Sbjct: 140 EACDDLGGEFCEPEFLNGVF 157

[Close]

BLAST of MELO3C014813 vs. TrEMBL
Match: C9E9F1_CUCSA (GA-like protein (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.7e-56
Identity = 118/139 (84.89%), Postives = 124/139 (89.21%), Query Frame = 1


Query: 5   VLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISVF 64
           VLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISVF
Sbjct: 1   VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVF 60

Query: 65  PAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRGE 124
           PAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ EEIDREYLDY ADSKTVF GE
Sbjct: 61  PAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASSEEIDREYLDY-ADSKTVFPGE 120

Query: 125 ACDDLGGEFCEAEFLNGVF 144
           ACDDLGGEFCE EFLNGVF
Sbjct: 121 ACDDLGGEFCEPEFLNGVF 137

[Close]

BLAST of MELO3C014813 vs. TrEMBL
Match: I3TAS9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSS-RPSAIKATASVVYDTSVVDYS 60
           MQ A+ S A P+++P +   + SH + FP    GS +  R +AIK  A+V YDTS VDY+
Sbjct: 1   MQTALTSAATPNVVPLTPSKSVSHLTSFPAKLTGSLAPPRFTAIKV-ATVNYDTSTVDYT 60

Query: 61  SAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSK 120
           SA SVFP EACETIGG+AC  A M+PEV+L+P   NN  P  A+ E ++REYL+Y  D K
Sbjct: 61  SAFSVFPVEACETIGGDACL-AEMYPEVKLKPEARNN-TPRDAS-ENVEREYLEY-NDPK 120

Query: 121 TVFRGEACDDLGGEFCEAEFLNGVF 144
           TVF+ EACDDLGG FCE E+  GV+
Sbjct: 121 TVFQAEACDDLGGIFCELEYQKGVY 140

[Close]

BLAST of MELO3C014813 vs. TrEMBL
Match: A0A067DPR4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032466mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-27
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLPSSTLSNSSHS--HFPFITFGSNSSRPSAIKATASVVYDTSVVDYS 60
           MQAA LSI+  +L+P +T  N S    + P +   S +SR SAIK  A+   D S  DY+
Sbjct: 1   MQAA-LSISPTTLVPLTTSKNFSQVAIYTPKLVGSSLASRRSAIKVAATTSNDPSTFDYN 60

Query: 61  SAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSK 120
           SA SVFPAEACE IGG+AC  A M+PE +L+P   N+ +   +  E I+REYL+Y  D+ 
Sbjct: 61  SAFSVFPAEACEVIGGDACS-AEMYPEAKLKPEAKNDTSTTAS--ESIEREYLEY-NDTN 120

Query: 121 TVFRGEACDDLGGEFCEAEFLNGVF 144
           TVF+GEACDDLGG FCE E+  GV+
Sbjct: 121 TVFKGEACDDLGGTFCEREYQRGVY 140

[Close]

BLAST of MELO3C014813 vs. TrEMBL
Match: Q84N27_9ROSI (CCR protein OS=Citrus x microcarpa PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLPSSTLSNSSHS--HFPFITFGSNSSRPSAIKATASVVYDTSVVDYS 60
           MQAA LSI+  +L+P +T  N S    + P +   S +SR SAIK  A+   D S  DY+
Sbjct: 1   MQAA-LSISPTTLVPLTTSKNFSQVAIYTPKLVGSSLASRRSAIKVAATTSNDPSTFDYN 60

Query: 61  SAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSK 120
           SA SVFPAEACE IGG+AC  A M+PE +L+P   N+ +   +  E I+REYL+Y  D+ 
Sbjct: 61  SAFSVFPAEACEVIGGDACS-AEMYPEAKLKPEAKNDTSTTAS--EPIEREYLEY-NDTN 120

Query: 121 TVFRGEACDDLGGEFCEAEFLNGVF 144
           TVF+GEACDDLGG FCE E+  GV+
Sbjct: 121 TVFKGEACDDLGGTFCEREYQRGVY 140

[Close]

BLAST of MELO3C014813 vs. TAIR10
Match: AT3G26740.1 (AT3G26740.1 CCR-like)

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-19
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 1


Query: 14  LPSSTLSNSSHSHFPFITFGS--NSSRPSAIKATASVVYDTSVVDYSSAI-SVFPAEACE 73
           LPSS  S       P  T  S  +S R +   +++S+  D + VDY+S+I SVFPAEACE
Sbjct: 15  LPSSVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSLTSDPNTVDYNSSILSVFPAEACE 74

Query: 74  TIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRGEACDDLG 133
            I G AC  A+++PEV+L        +  VA+ E +DREY +Y +  KTVFR EACDDLG
Sbjct: 75  VISGYACS-ADIYPEVKLD---TKPVSRPVAS-EPVDREYEEYNSP-KTVFREEACDDLG 134

Query: 134 GEFCEAEF 139
           GEFCE +F
Sbjct: 135 GEFCEPDF 136

[Close]

BLAST of MELO3C014813 vs. NCBI nr
Match: gi|659098188|ref|XP_008450019.1| (PREDICTED: light-regulated protein [Cucumis melo])

HSP 1 Score: 289.7 bits (740), Expect = 2.9e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSA 60
           MQAAVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSA
Sbjct: 1   MQAAVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSA 60

Query: 61  ISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTV 120
           ISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTV
Sbjct: 61  ISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTV 120

Query: 121 FRGEACDDLGGEFCEAEFLNGVF 144
           FRGEACDDLGGEFCEAEFLNGVF
Sbjct: 121 FRGEACDDLGGEFCEAEFLNGVF 143

[Close]

BLAST of MELO3C014813 vs. NCBI nr
Match: gi|778681823|ref|XP_004145699.2| (PREDICTED: light-regulated protein [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-56
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 4   AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISV 63
           AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISV
Sbjct: 20  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISV 79

Query: 64  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 123
           FPAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ EEIDREYLDY ADSKTVF G
Sbjct: 80  FPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASSEEIDREYLDY-ADSKTVFPG 139

Query: 124 EACDDLGGEFCEAEFLNGVF 144
           EACDDLGGEFCE EFLNGVF
Sbjct: 140 EACDDLGGEFCEPEFLNGVF 157

[Close]

BLAST of MELO3C014813 vs. NCBI nr
Match: gi|259013076|gb|ACV88397.1| (GA-like protein [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 6.7e-56
Identity = 118/139 (84.89%), Postives = 124/139 (89.21%), Query Frame = 1


Query: 5   VLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISVF 64
           VLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISVF
Sbjct: 1   VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVF 60

Query: 65  PAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRGE 124
           PAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ EEIDREYLDY ADSKTVF GE
Sbjct: 61  PAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASSEEIDREYLDY-ADSKTVFPGE 120

Query: 125 ACDDLGGEFCEAEFLNGVF 144
           ACDDLGGEFCE EFLNGVF
Sbjct: 121 ACDDLGGEFCEPEFLNGVF 137

[Close]

BLAST of MELO3C014813 vs. NCBI nr
Match: gi|1009152092|ref|XP_015893906.1| (PREDICTED: light-regulated protein [Ziziphus jujuba])

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-31
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLP----SSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVD 60
           MQAA+ SIA P+L+P    SS+ + S  S  P    GS +SR S++KA A+V YD   VD
Sbjct: 1   MQAAI-SIA-PTLIPLTPSSSSKNLSQRSVVPQKLNGSLASRRSSVKA-ATVTYDNYTVD 60

Query: 61  YSSAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAAD 120
           YSS ISVFPAEACETIGGEA CWA MFPE +L+      QN A    E+IDREYL Y  D
Sbjct: 61  YSSQISVFPAEACETIGGEA-CWAGMFPEAKLE---QQPQNSAARASEDIDREYLQY-TD 120

Query: 121 SKTVFRGEACDDLGGEFCEAEFLNGVF 144
           +KTVFRGEACDDLGG FCE E+  GV+
Sbjct: 121 AKTVFRGEACDDLGGAFCEREYQRGVY 139

[Close]

BLAST of MELO3C014813 vs. NCBI nr
Match: gi|388523119|gb|AFK49621.1| (unknown [Lotus japonicus])

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 1


Query: 1   MQAAVLSIAVPSLLPSSTLSNSSH-SHFPFITFGSNSS-RPSAIKATASVVYDTSVVDYS 60
           MQ A+ S A P+++P +   + SH + FP    GS +  R +AIK  A+V YDTS VDY+
Sbjct: 1   MQTALTSAATPNVVPLTPSKSVSHLTSFPAKLTGSLAPPRFTAIKV-ATVNYDTSTVDYT 60

Query: 61  SAISVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSK 120
           SA SVFP EACETIGG+AC  A M+PEV+L+P   NN  P  A+ E ++REYL+Y  D K
Sbjct: 61  SAFSVFPVEACETIGGDACL-AEMYPEVKLKPEARNN-TPRDAS-ENVEREYLEY-NDPK 120

Query: 121 TVFRGEACDDLGGEFCEAEFLNGVF 144
           TVF+ EACDDLGG FCE E+  GV+
Sbjct: 121 TVFQAEACDDLGGIFCELEYQKGVY 140

The following BLAST results are available for this feature:

BLAST of MELO3C014813 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIRP1_ORYSJ	1.6e-17	54.84	Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1	[more]

BLAST of MELO3C014813 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8G9_CUCSA	1.6e-56	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G598910 PE=4 SV=1	[more]
C9E9F1_CUCSA	4.7e-56	84.89	GA-like protein (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
I3TAS9_LOTJA	1.6e-27	53.79	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A067DPR4_CITSI	7.8e-27	51.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032466mg PE=4 SV=1	[more]
Q84N27_9ROSI	1.0e-26	51.03	CCR protein OS=Citrus x microcarpa PE=2 SV=1	[more]

BLAST of MELO3C014813 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26740.1	4.1e-19	47.66	CCR-like	[more]

BLAST of MELO3C014813 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098188\|ref\|XP_008450019.1\|	2.9e-75	100.00	PREDICTED: light-regulated protein [Cucumis melo]	[more]
gi\|778681823\|ref\|XP_004145699.2\|	2.3e-56	85.00	PREDICTED: light-regulated protein [Cucumis sativus]	[more]
gi\|259013076\|gb\|ACV88397.1\|	6.7e-56	84.89	GA-like protein [Cucumis sativus]	[more]
gi\|1009152092\|ref\|XP_015893906.1\|	7.5e-31	59.18	PREDICTED: light-regulated protein [Ziziphus jujuba]	[more]
gi\|388523119\|gb\|AFK49621.1\|	2.2e-27	53.79	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009856	Lir1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007623	circadian rhythm
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0098807	chloroplast thylakoid membrane protein complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014813T1	MELO3C014813T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 1..136 score: 5.8
None	No IPR available	PANTHER	PTHR36762	FAMILY NOT NAMED	coord: 2..143 score: 1.4
None	No IPR available	PANTHER	PTHR36762:SF2	A.THALIANA MRNA (ORF19) FROM CHROMOSOME III	coord: 2..143 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014813	Csa3G598910	Cucumber (Chinese Long) v2	cumeB237
MELO3C014813	Cla003233	Watermelon (97103) v1	mewmB464
MELO3C014813	ClCG05G012680	Watermelon (Charleston Gray)	mewcgB428
MELO3C014813	Cla97C05G094380	Watermelon (97103) v2	mewmbB435
MELO3C014813	Bhi01G001531	Wax gourd	mewgoB544
MELO3C014813	CSPI03G26230	Wild cucumber (PI 183967)	cpimeB232
MELO3C014813	Cucsa.156030	Cucumber (Gy14) v1	cgymeB261
MELO3C014813	CmoCh11G015720	Cucurbita moschata (Rifu)	cmomeB130
MELO3C014813	Cp4.1LG04g06400	Cucurbita pepo (Zucchini)	cpemeB641
MELO3C014813	CsGy3G024540	Cucumber (Gy14) v2	cgybmeB202
MELO3C014813	CsaV3_3G027740	Cucumber (Chinese Long) v3	cucmeB238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014813	Wax gourd	mewgoB532
MELO3C014813	Cucumber (Gy14) v1	cgymeB260
MELO3C014813	Cucurbita maxima (Rimu)	cmameB137
MELO3C014813	Cucurbita maxima (Rimu)	cmameB138
MELO3C014813	Cucurbita maxima (Rimu)	cmameB240
MELO3C014813	Cucurbita moschata (Rifu)	cmomeB129
MELO3C014813	Cucurbita moschata (Rifu)	cmomeB228
MELO3C014813	Wild cucumber (PI 183967)	cpimeB244
MELO3C014813	Cucumber (Chinese Long) v2	cumeB245
MELO3C014813	Watermelon (Charleston Gray)	mewcgB427
MELO3C014813	Cucurbita pepo (Zucchini)	cpemeB584
MELO3C014813	Cucurbita pepo (Zucchini)	cpemeB640
MELO3C014813	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C014813	Bottle gourd (USVL1VR-Ls)	lsimeB383
MELO3C014813	Cucumber (Gy14) v2	cgybmeB213
MELO3C014813	Silver-seed gourd	carmeB0445
MELO3C014813	Silver-seed gourd	carmeB0373
MELO3C014813	Silver-seed gourd	carmeB0374
MELO3C014813	Watermelon (97103) v2	mewmbB434