MELO3C014800 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014800
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Locationchr6 : 20044204 .. 20044518 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACAAACACGGAGTGAGAGTGAGACTTGTTACATTAATCGAATGATGATGATGTCGGTATTTGGAACGAGATATTATGATTTAGGTGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATAGAGGCAGGTCCATCATCGTCAAACTTTGGGCAAGAATACTATGATTTAAGGACTGATCCATCATATTCATACAAGCATGGACGATACGGGCGCGGTCATAGAGAACATAATGAATATTTATACTACGAAGTGCCTGCAGCAGTACCCAACGAACAAGATGAGCAGCAACAACAAGAGAATTAG

mRNA sequence

ATGACACAAACACGGAGTGAGAGTGAGACTTGTTACATTAATCGAATGATGATGATGTCGGTATTTGGAACGAGATATTATGATTTAGGTGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATAGAGGCAGGTCCATCATCGTCAAACTTTGGGCAAGAATACTATGATTTAAGGACTGATCCATCATATTCATACAAGCATGGACGATACGGGCGCGGTCATAGAGAACATAATGAATATTTATACTACGAAGTGCCTGCAGCAGTACCCAACGAACAAGATGAGCAGCAACAACAAGAGAATTAG

Coding sequence (CDS)

ATGACACAAACACGGAGTGAGAGTGAGACTTGTTACATTAATCGAATGATGATGATGTCGGTATTTGGAACGAGATATTATGATTTAGGTGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATAGAGGCAGGTCCATCATCGTCAAACTTTGGGCAAGAATACTATGATTTAAGGACTGATCCATCATATTCATACAAGCATGGACGATACGGGCGCGGTCATAGAGAACATAATGAATATTTATACTACGAAGTGCCTGCAGCAGTACCCAACGAACAAGATGAGCAGCAACAACAAGAGAATTAG

Protein sequence

MTQTRSESETCYINRMMMMSVFGTRYYDLGVGQSSNFGIGYYNIEAGPSSSNFGQEYYDLRTDPSYSYKHGRYGRGHREHNEYLYYEVPAAVPNEQDEQQQQEN*
Homology
[Close]
BLAST of MELO3C014800 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 1   MTQTRSESETCYINRMMMMSVFGTRYYDLGVGQSSNFGIGYYNIEAGPSSSNFGQEYYDL 60
           MTQT+++SE  Y++ +MMM  FG  YYD GVGQSS+FG GYYN EAG SS++FGQ+YYDL
Sbjct: 119 MTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDL 178

Query: 61  RTDPSYSYKHGRYGRGHREHNEYLYYEVPAAVPNEQDEQQQQEN 105
            +DPS SY HG +GRG  EHNEYLYY+VPAAVP + DEQQQQEN
Sbjct: 179 GSDPSSSYMHG-HGRGRGEHNEYLYYKVPAAVPEQSDEQQQQEN 221

[Close]
BLAST of MELO3C014800 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 4   TRSESETCYINRMMMMSVFGTRYYDLGVGQSSNFGIGYYNIEAGPSSSNFGQE 57
           T+++SE  Y++ +MMM  FGT YYD GVGQSS+F   YYN EAG SSSNFGQ+
Sbjct: 185 TQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSEAGSSSSNFGQQ 237

The following BLAST results are available for this feature:
BLAST of MELO3C014800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|2.6e-3368.27PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|1.5e-0962.26PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014800T1MELO3C014800T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014800Wax gourdmewgoB532
MELO3C014800Wax gourdmewgoB544
MELO3C014800Cucumber (Gy14) v1cgymeB260
MELO3C014800Cucumber (Gy14) v1cgymeB261
MELO3C014800Cucurbita maxima (Rimu)cmameB137
MELO3C014800Cucurbita maxima (Rimu)cmameB138
MELO3C014800Cucurbita maxima (Rimu)cmameB139
MELO3C014800Cucurbita maxima (Rimu)cmameB240
MELO3C014800Cucurbita maxima (Rimu)cmameB243
MELO3C014800Cucurbita moschata (Rifu)cmomeB127
MELO3C014800Cucurbita moschata (Rifu)cmomeB129
MELO3C014800Cucurbita moschata (Rifu)cmomeB130
MELO3C014800Cucurbita moschata (Rifu)cmomeB228
MELO3C014800Cucurbita moschata (Rifu)cmomeB231
MELO3C014800Wild cucumber (PI 183967)cpimeB232
MELO3C014800Cucumber (Chinese Long) v2cumeB237
MELO3C014800Watermelon (Charleston Gray)mewcgB427
MELO3C014800Watermelon (Charleston Gray)mewcgB428
MELO3C014800Watermelon (97103) v1mewmB464
MELO3C014800Watermelon (97103) v1mewmB471
MELO3C014800Cucurbita pepo (Zucchini)cpemeB584
MELO3C014800Cucurbita pepo (Zucchini)cpemeB586
MELO3C014800Cucurbita pepo (Zucchini)cpemeB638
MELO3C014800Cucurbita pepo (Zucchini)cpemeB640
MELO3C014800Cucurbita pepo (Zucchini)cpemeB641
MELO3C014800Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C014800Bottle gourd (USVL1VR-Ls)lsimeB383
MELO3C014800Cucumber (Gy14) v2cgybmeB202
MELO3C014800Silver-seed gourdcarmeB0445
MELO3C014800Silver-seed gourdcarmeB0373
MELO3C014800Silver-seed gourdcarmeB0374
MELO3C014800Cucumber (Chinese Long) v3cucmeB238
MELO3C014800Watermelon (97103) v2mewmbB434
MELO3C014800Watermelon (97103) v2mewmbB435