MELO3C014541 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014541
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Non-canonical purine NTP pyrophosphatase
Location	chr5 : 1530264 .. 1530446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCATCATCCACTTCAAAGTCCGATTTGCAATTAGAAGAAATGCTGGATCGAATATTGACGCGCTTGGCTTTGTGCGACGACTCCAATCTTCAATCCCTTCTTTTGAAAGTTCTTCCTGCCACAATTTCATCCCTTTCTTCGCAGGCCATATCTGTCCGTAACAAGGTTTTGTAA

mRNA sequence

ATGGCGGAATCATCATCCACTTCAAAGTCCGATTTGCAATTAGAAGAAATGCTGGATCGAATATTGACGCGCTTGGCTTTGTGCGACGACTCCAATCTTCAATCCCTTCTTTTGAAAGTTCTTCCTGCCACAATTTCATCCCTTTCTTCGCAGGCCATATCTGTCCGTAACAAGGTTTTGTAA

Coding sequence (CDS)

ATGGCGGAATCATCATCCACTTCAAAGTCCGATTTGCAATTAGAAGAAATGCTGGATCGAATATTGACGCGCTTGGCTTTGTGCGACGACTCCAATCTTCAATCCCTTCTTTTGAAAGTTCTTCCTGCCACAATTTCATCCCTTTCTTCGCAGGCCATATCTGTCCGTAACAAGGTTTTGTAA

Protein sequence

MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL*

Homology

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BLAST of MELO3C014541 vs. TrEMBL
Match: A0A0A0KI82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429070 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

[Close]

BLAST of MELO3C014541 vs. TrEMBL
Match: G7KCU1_MEDTR (Proteasome-associated ECM29-like protein OS=Medicago truncatula GN=MTR_5g089000 PE=4 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-14
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 1  MAESSSTS------KSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAIS 60
          MAESSS++      KSD ++EEMLDR+LTRLALCDDSNL+ LL K+LP TISSLSS +I+
Sbjct: 1  MAESSSSTATPLRAKSDSEIEEMLDRMLTRLALCDDSNLEPLLSKLLPLTISSLSSPSIA 60

[Close]

BLAST of MELO3C014541 vs. TrEMBL
Match: I1M768_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-13
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MAESSSTS--KSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNK 60
          MAESSS+S  KSD ++EEMLDR+LTRLALCDDS L+ LL K+LP  ISSLSSQ+++VRNK
Sbjct: 1  MAESSSSSLAKSDSEVEEMLDRMLTRLALCDDSKLEPLLSKLLPLCISSLSSQSVAVRNK 60

[Close]

BLAST of MELO3C014541 vs. TrEMBL
Match: A0A0B2PNJ9_GLYSO (Proteasome-associated protein ECM29 like OS=Glycine soja GN=glysoja_047266 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-13
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MAESSSTS--KSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNK 60
          MAESSS+S  KSD ++EEMLDR+LTRLALCDDS L+ LL K+LP  ISSLSSQ+++VRNK
Sbjct: 1  MAESSSSSLAKSDSEVEEMLDRMLTRLALCDDSKLEPLLSKLLPLCISSLSSQSVAVRNK 60

[Close]

BLAST of MELO3C014541 vs. TrEMBL
Match: A0A0R0G8R3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G036800 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-13
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1


Query: 1  MAESSSTS--KSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNK 60
          MAESSS+S  KSD ++EEMLDR+LTRLALCDDS L+ LL K+LP  ISSLSSQ+++VRNK
Sbjct: 1  MAESSSSSLAKSDSEVEEMLDRMLTRLALCDDSKLEPLLSKLLPLCISSLSSQSVAVRNK 60

[Close]

BLAST of MELO3C014541 vs. TAIR10
Match: AT2G26780.1 (AT2G26780.1 ARM repeat superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-16
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 2  AESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 61
          + SS  SKSD +LEEMLDR+LTRLALCDDS L+SL+  +LP TISSLSSQ+  VRNKVL
Sbjct: 6  SSSSLISKSDAELEEMLDRMLTRLALCDDSKLESLVSNLLPLTISSLSSQSPVVRNKVL 64

[Close]

BLAST of MELO3C014541 vs. NCBI nr
Match: gi|778716843|ref|XP_011657603.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

[Close]

BLAST of MELO3C014541 vs. NCBI nr
Match: gi|778716846|ref|XP_011657604.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X3 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

[Close]

BLAST of MELO3C014541 vs. NCBI nr
Match: gi|659097443|ref|XP_008449628.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

[Close]

BLAST of MELO3C014541 vs. NCBI nr
Match: gi|778716839|ref|XP_011657602.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

[Close]

BLAST of MELO3C014541 vs. NCBI nr
Match: gi|659097440|ref|XP_008449627.1| (PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60
          MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL
Sbjct: 1  MAESSSTSKSDLQLEEMLDRILTRLALCDDSNLQSLLLKVLPATISSLSSQAISVRNKVL 60

The following BLAST results are available for this feature:

BLAST of MELO3C014541 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI82_CUCSA	4.2e-22	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429070 PE=4 SV=1	[more]
G7KCU1_MEDTR	9.3e-14	69.70	Proteasome-associated ECM29-like protein OS=Medicago truncatula GN=MTR_5g089000 ...	[more]
I1M768_SOYBN	1.2e-13	72.58	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A0B2PNJ9_GLYSO	1.2e-13	72.58	Proteasome-associated protein ECM29 like OS=Glycine soja GN=glysoja_047266 PE=4 ...	[more]
A0A0R0G8R3_SOYBN	1.2e-13	72.58	Uncharacterized protein OS=Glycine max GN=GLYMA_14G036800 PE=4 SV=1	[more]

BLAST of MELO3C014541 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26780.1	8.9e-16	71.19	ARM repeat superfamily protein	[more]

BLAST of MELO3C014541 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716843\|ref\|XP_011657603.1\|	6.0e-22	100.00	PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis sativ...	[more]
gi\|778716846\|ref\|XP_011657604.1\|	6.0e-22	100.00	PREDICTED: proteasome-associated protein ECM29 homolog isoform X3 [Cucumis sativ...	[more]
gi\|659097443\|ref\|XP_008449628.1\|	6.0e-22	100.00	PREDICTED: proteasome-associated protein ECM29 homolog isoform X2 [Cucumis melo]	[more]
gi\|778716839\|ref\|XP_011657602.1\|	6.0e-22	100.00	PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis sativ...	[more]
gi\|659097440\|ref\|XP_008449627.1\|	6.0e-22	100.00	PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024372	Ecm29

Vocabulary: **Molecular Function**
Term	Definition
GO:0032947	protein complex scaffold

Vocabulary: **Biological Process**
Term	Definition
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0032947	protein complex scaffold

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014541T1	MELO3C014541T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024372	Proteasome component Ecm29	PFAM	PF13001	Ecm29	coord: 18..60 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014541	Carg06863	Silver-seed gourd	carmeB0528

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014541	Wax gourd	mewgoB484
MELO3C014541	Cucumber (Gy14) v1	cgymeB098
MELO3C014541	Cucurbita maxima (Rimu)	cmameB521
MELO3C014541	Cucurbita maxima (Rimu)	cmameB572
MELO3C014541	Cucurbita moschata (Rifu)	cmomeB509
MELO3C014541	Cucurbita moschata (Rifu)	cmomeB561
MELO3C014541	Wild cucumber (PI 183967)	cpimeB493
MELO3C014541	Cucumber (Chinese Long) v2	cumeB491
MELO3C014541	Watermelon (Charleston Gray)	mewcgB376
MELO3C014541	Watermelon (97103) v1	mewmB419
MELO3C014541	Cucurbita pepo (Zucchini)	cpemeB278
MELO3C014541	Cucurbita pepo (Zucchini)	cpemeB696
MELO3C014541	Bottle gourd (USVL1VR-Ls)	lsimeB072
MELO3C014541	Cucumber (Gy14) v2	cgybmeB432
MELO3C014541	Silver-seed gourd	carmeB0910
MELO3C014541	Cucumber (Chinese Long) v3	cucmeB503
MELO3C014541	Watermelon (97103) v2	mewmbB377