MELO3C014367.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014367.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ABC1 family protein
Location	chr05 : 3222299 .. 3223356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAGTGGCCTTCCTCCTCATTGCTTTTCTCATCTTCTTTCCTTTTTCTGAATCCTTCTGATATTCATCCAAAGGCATCGAACGCCCTTGCTGGCATTCAATCTAAGAAAAACTTAGCTGTATCTGAGCAAGTTTTCTGAGAGTGCTCGGATGACAAGGTTTGTTCGGAAGCCAGTAGAGATGAAGAACTGGAATGCCCTTACGGTACTTTGTGCAGGGAATTTTCTTGTCAGCAAGGAACCTCCTCATTGTCCAATTTTGCTTGACTTTGAGCTTAGCAAGAAGTTAGCAACCACCATGGAACAACCACTGGCAAAGACGTTTTTAGCCACTGCAGAGGTTTGGATGACATTATTGTTTTCTTCACATTTATCTTCTACCGTTTGATCTGTTCATTTAGTATAAATACAATTATCAATGAAGGTTCTTCATTTGTCACTCTCTTAAGTGCAACATTGCAAGATTGAAGACTTACTGATGTTGACACTATGAATATGCAGTGTACTAATATTCAAAATACCATCATCGTTACTAAATTACATATTGTAAACAGAAAACTGTCTGCATTTTACTCTTCCAATGTTGACAGTGTTTTGGTTTTACAAGATTATATATGAACAGCTTACTATCCGATTCATTAGTTGTTGTGTTTCCTTTACAAATGTATGAGTTGTGTATTGTCAACTTCATTTTATTTTAACTTGGAATTGGAAGAAAAACTAGAGGGGTTTTGACATAGATGTGAAGAAGAAGAAGTTGGAACAATTGGATTATTTTGAGTTGGGACTGTGTATGATTTCAAGAAATTTTTAAAGGACTGAAACACACTTGGGATTGAACTTCACTTTAGAATTTTCTTTTGTTCTCTTTTTTAGTCCTTTAATAGTGAAGAATTATTGATGAGATTATGATTTGGATAGATATCTTGGTCACCTTTCTCGAGTTCAATCATGAGTCCATTGATTTCACTACTTTTTCTTTGCAAATTTCAGACAAAGATGTTGCCTTTTTATAGACAACAAACATGAACTATGATTTGGGAGATTTATTTAATTAGT

mRNA sequence

GATAGTGGCCTTCCTCCTCATTGCTTTTCTCATCTTCTTTCCTTTTTCTGAATCCTTCTGATATTCATCCAAAGGCATCGAACGCCCTTGCTGGCATTCAATCTAAGAAAAACTTAGCTGTATCTGAGCAAGTTTTCTGAGAGTGCTCGGATGACAAGGTTTGTTCGGAAGCCAGTAGAGATGAAGAACTGGAATGCCCTTACGGTACTTTGTGCAGGGAATTTTCTTGTCAGCAAGGAACCTCCTCATTGTCCAATTTTGCTTGACTTTGAGCTTAGCAAGAAGTTAGCAACCACCATGGAACAACCACTGGCAAAGACGTTTTTAGCCACTGCAGAGACAAAGATGTTGCCTTTTTATAGACAACAAACATGAACTATGATTTGGGAGATTTATTTAATTAGT

Coding sequence (CDS)

ATGACAAGGTTTGTTCGGAAGCCAGTAGAGATGAAGAACTGGAATGCCCTTACGGTACTTTGTGCAGGGAATTTTCTTGTCAGCAAGGAACCTCCTCATTGTCCAATTTTGCTTGACTTTGAGCTTAGCAAGAAGTTAGCAACCACCATGGAACAACCACTGGCAAAGACGTTTTTAGCCACTGCAGAGACAAAGATGTTGCCTTTTTATAGACAACAAACATGA

Protein sequence

MTRFVRKPVEMKNWNALTVLCAGNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAETKMLPFYRQQT

Homology

[Close]

BLAST of MELO3C014367.2 vs. NCBI nr
Match: XP_008449403.1 (PREDICTED: putative transferase At1g60990, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MTRFVRKPVEMKNWNALTVLCAGNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLA 60
          MTRFVRKPVEMKNWNAL+VLCAGNFLVSKEPPHCPILLDFEL+KKLAT MEQPLAKTFLA
Sbjct: 1  MTRFVRKPVEMKNWNALSVLCAGNFLVSKEPPHCPILLDFELTKKLATAMEQPLAKTFLA 60

Query: 61 TAE 64
           AE
Sbjct: 61 VAE 63

[Close]

BLAST of MELO3C014367.2 vs. NCBI nr
Match: XP_008466267.1 (PREDICTED: uncharacterized protein LOC103503727 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPHCPILLDF L+KKL TTM+Q LAK FLA AE
Sbjct: 290 GNFLVSKEPPHCPILLDFGLTKKLPTTMKQALAKMFLAAAE 330

[Close]

BLAST of MELO3C014367.2 vs. NCBI nr
Match: XP_004136301.1 (PREDICTED: uncharacterized protein LOC101216220 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPHCPILLDF L+KKL TTM+  LAK FLA AE
Sbjct: 290 GNFLVSKEPPHCPILLDFGLTKKLPTTMKLALAKMFLAAAE 330

[Close]

BLAST of MELO3C014367.2 vs. NCBI nr
Match: KGN60194.1 (hypothetical protein Csa_3G888530 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPHCPILLDF L+KKL TTM+  LAK FLA AE
Sbjct: 290 GNFLVSKEPPHCPILLDFGLTKKLPTTMKLALAKMFLAAAE 330

[Close]

BLAST of MELO3C014367.2 vs. NCBI nr
Match: PNS91926.1 (hypothetical protein POPTR_018G003400v3 [Populus trichocarpa])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAETKM 67
           GNFLVSKEPPH PILLDF L+K+++++M+Q LAK FLATAE ++
Sbjct: 293 GNFLVSKEPPHRPILLDFGLTKRISSSMKQSLAKMFLATAELRL 336

[Close]

BLAST of MELO3C014367.2 vs. TAIR10
Match: AT5G24810.2 (ABC1 family protein)

HSP 1 Score: 59.7 bits (143), Expect = 8.8e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEP H PILLDF LSKK++ +++Q LAK FLA+AE
Sbjct: 371 GNFLVSKEPQHRPILLDFGLSKKISHSLKQALAKMFLASAE 411

[Close]

BLAST of MELO3C014367.2 vs. TrEMBL
Match: tr|A0A1S3BML1|A0A1S3BML1_CUCME (putative transferase At1g60990, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491300 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MTRFVRKPVEMKNWNALTVLCAGNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLA 60
          MTRFVRKPVEMKNWNAL+VLCAGNFLVSKEPPHCPILLDFEL+KKLAT MEQPLAKTFLA
Sbjct: 1  MTRFVRKPVEMKNWNALSVLCAGNFLVSKEPPHCPILLDFELTKKLATAMEQPLAKTFLA 60

Query: 61 TAE 64
           AE
Sbjct: 61 VAE 63

[Close]

BLAST of MELO3C014367.2 vs. TrEMBL
Match: tr|A0A1S3CQU2|A0A1S3CQU2_CUCME (uncharacterized protein LOC103503727 OS=Cucumis melo OX=3656 GN=LOC103503727 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPHCPILLDF L+KKL TTM+Q LAK FLA AE
Sbjct: 290 GNFLVSKEPPHCPILLDFGLTKKLPTTMKQALAKMFLAAAE 330

[Close]

BLAST of MELO3C014367.2 vs. TrEMBL
Match: tr|A0A0A0LGU0|A0A0A0LGU0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888530 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPHCPILLDF L+KKL TTM+  LAK FLA AE
Sbjct: 290 GNFLVSKEPPHCPILLDFGLTKKLPTTMKLALAKMFLAAAE 330

[Close]

BLAST of MELO3C014367.2 vs. TrEMBL
Match: tr|U5FJT0|U5FJT0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G003400v3 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAETKM 67
           GNFLVSKEPPH PILLDF L+K+++++M+Q LAK FLATAE ++
Sbjct: 293 GNFLVSKEPPHRPILLDFGLTKRISSSMKQSLAKMFLATAELRL 336

[Close]

BLAST of MELO3C014367.2 vs. TrEMBL
Match: tr|A0A2C9UBN2|A0A2C9UBN2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G137200 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 23  GNFLVSKEPPHCPILLDFELSKKLATTMEQPLAKTFLATAE 64
           GNFLVSKEPPH P+LLDF L+KK++T+M+Q LAK FLA+AE
Sbjct: 293 GNFLVSKEPPHHPVLLDFGLTKKISTSMKQALAKMFLASAE 333

The following BLAST results are available for this feature:

BLAST of MELO3C014367.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449403.1	9.4e-26	93.65	PREDICTED: putative transferase At1g60990, chloroplastic isoform X2 [Cucumis mel...	[more]
XP_008466267.1	1.6e-09	82.93	PREDICTED: uncharacterized protein LOC103503727 [Cucumis melo]	[more]
XP_004136301.1	1.0e-08	80.49	PREDICTED: uncharacterized protein LOC101216220 [Cucumis sativus]	[more]
KGN60194.1	1.0e-08	80.49	hypothetical protein Csa_3G888530 [Cucumis sativus]	[more]
PNS91926.1	1.2e-07	68.18	hypothetical protein POPTR_018G003400v3 [Populus trichocarpa]	[more]

BLAST of MELO3C014367.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24810.2	8.8e-10	70.73	ABC1 family protein	[more]

BLAST of MELO3C014367.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C014367.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BML1\|A0A1S3BML1_CUCME	6.2e-26	93.65	putative transferase At1g60990, chloroplastic isoform X2 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3CQU2\|A0A1S3CQU2_CUCME	1.1e-09	82.93	uncharacterized protein LOC103503727 OS=Cucumis melo OX=3656 GN=LOC103503727 PE=...	[more]
tr\|A0A0A0LGU0\|A0A0A0LGU0_CUCSA	6.9e-09	80.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888530 PE=4 SV=1	[more]
tr\|U5FJT0\|U5FJT0_POPTR	7.7e-08	68.18	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G003400v3 PE=...	[more]
tr\|A0A2C9UBN2\|A0A2C9UBN2_MANES	7.7e-08	73.17	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G137200 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014367.2.1	MELO3C014367.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014367.2	Cucumber (Gy14) v2	cgybmedB425
MELO3C014367.2	Cucumber (Gy14) v1	cgymedB327
MELO3C014367.2	Cucurbita maxima (Rimu)	cmamedB143
MELO3C014367.2	Cucurbita maxima (Rimu)	cmamedB554
MELO3C014367.2	Cucurbita moschata (Rifu)	cmomedB134
MELO3C014367.2	Cucurbita moschata (Rifu)	cmomedB542
MELO3C014367.2	Cucurbita pepo (Zucchini)	cpemedB279
MELO3C014367.2	Cucurbita pepo (Zucchini)	cpemedB759
MELO3C014367.2	Wild cucumber (PI 183967)	cpimedB478
MELO3C014367.2	Cucumber (Chinese Long) v2	cumedB469
MELO3C014367.2	Bottle gourd (USVL1VR-Ls)	lsimedB278
MELO3C014367.2	Watermelon (Charleston Gray)	medwcgB356
MELO3C014367.2	Watermelon (Charleston Gray)	medwcgB359
MELO3C014367.2	Silver-seed gourd	carmedB0655
MELO3C014367.2	Silver-seed gourd	carmedB0741
MELO3C014367.2	Cucumber (Chinese Long) v3	cucmedB488
MELO3C014367.2	Watermelon (97103) v2	medwmbB400
MELO3C014367.2	Watermelon (97103) v2	medwmbB402
MELO3C014367.2	Watermelon (97103) v2	medwmbB405
MELO3C014367.2	Wax gourd	medwgoB475