MELO3C014350 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014350
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pantothenate synthetase
Location	chr5 : 3424084 .. 3424396 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTCGCAATGTGCGGCTCTCACCTGAAGAAAGACAAAAGGTTCTCTTCAAATTATAGTGTAGTAGTGGCTTCAAAGTGCAAAGCACATTGGCTTTATCGTTCATGATCAAATGATTACTTAGATTCAGAAATTGCTTTGCTTCTTCTCTTTCGTCTATAGGCATTGTCAATAAACAGATCATTGTCAAAAGCAAAATCTGCAGCAGAACAAGGTGAACTCAATTGTAAAAGATTAAAAAACTTGGTTGTCGATGAAATACAAGAAGCTGGCGGAGAACTTGATTATGCTGAGGTGAGCCCTGGATGA

mRNA sequence

ATGAGTTCTCGCAATGTGCGGCTCTCACCTGAAGAAAGACAAAAGGCATTGTCAATAAACAGATCATTGTCAAAAGCAAAATCTGCAGCAGAACAAGGTGAACTCAATTGTAAAAGATTAAAAAACTTGGTTGTCGATGAAATACAAGAAGCTGGCGGAGAACTTGATTATGCTGAGGTGAGCCCTGGATGA

Coding sequence (CDS)

ATGAGTTCTCGCAATGTGCGGCTCTCACCTGAAGAAAGACAAAAGGCATTGTCAATAAACAGATCATTGTCAAAAGCAAAATCTGCAGCAGAACAAGGTGAACTCAATTGTAAAAGATTAAAAAACTTGGTTGTCGATGAAATACAAGAAGCTGGCGGAGAACTTGATTATGCTGAGGTGAGCCCTGGATGA

Protein sequence

MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEVSPG*

Homology

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BLAST of MELO3C014350 vs. Swiss-Prot
Match: PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEER+KA+SIN+SL +AKSAAE G+++C++L NLVV  I EAGG +DYAE+
Sbjct: 212 MSSRNVYLSPEEREKAVSINKSLFRAKSAAEDGQIHCEKLINLVVQSITEAGGRIDYAEI 271

[Close]

BLAST of MELO3C014350 vs. Swiss-Prot
Match: PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LS EER+KALSI+RSL  A++ A +G  +CK++KN +V  + E GG++DY E+
Sbjct: 215 MSSRNVHLSREEREKALSISRSLVDARTGALKGNTDCKQIKNKIVQTLTETGGQVDYVEI 274

[Close]

BLAST of MELO3C014350 vs. Swiss-Prot
Match: PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-12
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNVRLS EERQ+ALSI+RSL+ AK++  +G+ NC  LK++++ ++  + G +DY E+
Sbjct: 212 MSSRNVRLSDEERQRALSISRSLAMAKASVAEGKTNCAELKDMIIQQVVGSAGRVDYVEI 271

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BLAST of MELO3C014350 vs. Swiss-Prot
Match: PANC_BACP2 (Pantothenate synthetase OS=Bacillus pumilus (strain SAFR-032) GN=panC PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-08
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 2   SSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 61
           SSRNV LS +ERQ+A ++ R+L K +SA E GE +  R+  LV ++I +  GE+DY E+
Sbjct: 185 SSRNVYLSDKERQEAPALYRALKKGQSAIENGERDVSRIYQLVEEDILQTSGEIDYIEI 243

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BLAST of MELO3C014350 vs. Swiss-Prot
Match: PANC_PELTS (Pantothenate synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=panC PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQ-EAGGELDYAE 60
           MSSRNV L PE+R+ AL ++RSL KA  A   GE +  +L+ +V+D I+ E    +DY E
Sbjct: 184 MSSRNVYLDPEQRRAALVLSRSLEKAGEAFRAGERDASKLRQMVLDMIKAEPLANIDYVE 243

[Close]

BLAST of MELO3C014350 vs. TrEMBL
Match: A0A0K9RMD2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056280 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-16
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEERQKALSINRSLS+AK AAE+G++NCK+L++ V+  IQEAGG++DYAE+
Sbjct: 215 MSSRNVYLSPEERQKALSINRSLSRAKHAAEEGQINCKKLQDSVILAIQEAGGKVDYAEI 274

[Close]

BLAST of MELO3C014350 vs. TrEMBL
Match: F6HZY6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05780 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-15
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEER+KALSINRSLS+AK AAE+G+ NC+ L++LV+  I+EAGG +DYAE+
Sbjct: 222 MSSRNVHLSPEEREKALSINRSLSRAKFAAEKGQTNCRELRDLVIQAIEEAGGRIDYAEI 281

[Close]

BLAST of MELO3C014350 vs. TrEMBL
Match: A0A059AVS4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00804 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-15
Identity = 42/60 (70.00%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           +SSRNV LSPEER+KALSI+RSLS+AKSAAE+G++NC+ LK+ V+  IQEAGG++DYAE+
Sbjct: 216 LSSRNVHLSPEEREKALSISRSLSRAKSAAEKGQVNCQNLKDSVIQAIQEAGGKIDYAEI 275

[Close]

BLAST of MELO3C014350 vs. TrEMBL
Match: A0A0L9TXQ5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g152300 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEER+KALSIN+SL KAKSAAE GE+ C++L NLV+  I EAGG +DYAE+
Sbjct: 213 MSSRNVHLSPEEREKALSINKSLLKAKSAAEDGEVRCEKLSNLVIQCIAEAGGRIDYAEI 272

[Close]

BLAST of MELO3C014350 vs. TrEMBL
Match: A0A0S3SR21_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G190400 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEER+KALSIN+SL KAKSAAE GE+ C++L NLV+  I EAGG +DYAE+
Sbjct: 213 MSSRNVHLSPEEREKALSINKSLLKAKSAAEDGEVRCEKLSNLVIQCIAEAGGRIDYAEI 272

[Close]

BLAST of MELO3C014350 vs. TAIR10
Match: AT5G48840.1 (AT5G48840.1 homolog of bacterial PANC)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-13
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNVRLS EERQ+ALSI+RSL+ AK++  +G+ NC  LK++++ ++  + G +DY E+
Sbjct: 212 MSSRNVRLSDEERQRALSISRSLAMAKASVAEGKTNCAELKDMIIQQVVGSAGRVDYVEI 271

[Close]

BLAST of MELO3C014350 vs. NCBI nr
Match: gi|659130281|ref|XP_008465087.1| (PREDICTED: pantoate--beta-alanine ligase [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-23
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNVRLSPEERQKALSINRSLSKAKSAAE+GELNCKRLKNLVVDEIQEAGGELDYAE+
Sbjct: 213 MSSRNVRLSPEERQKALSINRSLSKAKSAAERGELNCKRLKNLVVDEIQEAGGELDYAEI 272

[Close]

BLAST of MELO3C014350 vs. NCBI nr
Match: gi|778682111|ref|XP_004152022.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNVRLSPEERQKALSINR LSKAKSAAE+GELNCKRLKNLV DEIQEAGGELDYAE+
Sbjct: 232 MSSRNVRLSPEERQKALSINRXLSKAKSAAERGELNCKRLKNLVADEIQEAGGELDYAEI 291

[Close]

BLAST of MELO3C014350 vs. NCBI nr
Match: gi|778716155|ref|XP_004140085.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNVRLSP ERQKALSINRSL KAKSAAEQGELNCK LKNLVVDEIQEAGGELDYAE+
Sbjct: 210 MSSRNVRLSPIERQKALSINRSLXKAKSAAEQGELNCKSLKNLVVDEIQEAGGELDYAEI 269

[Close]

BLAST of MELO3C014350 vs. NCBI nr
Match: gi|694314496|ref|XP_009371408.1| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Pyrus x bretschneideri])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 43/60 (71.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           +SSRNVRLSPEER+KALSI++SLSKAKS+AE+G++NCK L++LVV+ I EAGG +DYAE+
Sbjct: 220 LSSRNVRLSPEEREKALSISKSLSKAKSSAEKGQINCKELRDLVVEAISEAGGRVDYAEI 279

[Close]

BLAST of MELO3C014350 vs. NCBI nr
Match: gi|902225285|gb|KNA20017.1| (hypothetical protein SOVF_056280 [Spinacia oleracea])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-16
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1   MSSRNVRLSPEERQKALSINRSLSKAKSAAEQGELNCKRLKNLVVDEIQEAGGELDYAEV 60
           MSSRNV LSPEERQKALSINRSLS+AK AAE+G++NCK+L++ V+  IQEAGG++DYAE+
Sbjct: 215 MSSRNVYLSPEERQKALSINRSLSRAKHAAEEGQINCKKLQDSVILAIQEAGGKVDYAEI 274

The following BLAST results are available for this feature:

BLAST of MELO3C014350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PANC_LOTJA	1.8e-16	68.33	Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3	[more]
PANC_ORYSJ	5.9e-12	55.00	Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2	[more]
PANC_ARATH	5.9e-12	51.67	Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1	[more]
PANC_BACP2	8.8e-08	47.46	Pantothenate synthetase OS=Bacillus pumilus (strain SAFR-032) GN=panC PE=3 SV=1	[more]
PANC_PELTS	2.2e-06	45.90	Pantothenate synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / J...	[more]

BLAST of MELO3C014350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0K9RMD2_SPIOL	4.7e-16	73.33	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056280 PE=3 SV=1	[more]
F6HZY6_VITVI	1.0e-15	70.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05780 PE=3 SV=...	[more]
A0A059AVS4_EUCGR	1.0e-15	70.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00804 PE=3 SV=1	[more]
A0A0L9TXQ5_PHAAN	3.0e-15	71.67	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g152300 PE=3 SV=1	[more]
A0A0S3SR21_PHAAN	3.0e-15	71.67	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G190400 PE=...	[more]

BLAST of MELO3C014350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48840.1	3.3e-13	51.67	homolog of bacterial PANC	[more]

BLAST of MELO3C014350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130281\|ref\|XP_008465087.1\|	5.7e-23	96.67	PREDICTED: pantoate--beta-alanine ligase [Cucumis melo]	[more]
gi\|778682111\|ref\|XP_004152022.2\|	6.3e-22	93.33	PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus]	[more]
gi\|778716155\|ref\|XP_004140085.2\|	3.1e-21	93.33	PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sati...	[more]
gi\|694314496\|ref\|XP_009371408.1\|	3.0e-16	71.67	PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Pyrus x bretschne...	[more]
gi\|902225285\|gb\|KNA20017.1\|	6.7e-16	73.33	hypothetical protein SOVF_056280 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003721	Pantoate_ligase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004592	pantoate-beta-alanine ligase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015940	pantothenate biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0033317	pantothenate biosynthetic process from valine
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004592	pantoate-beta-alanine ligase activity
molecular_function	GO:0042803	protein homodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014350T1	MELO3C014350T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003721	Pantoate-beta-alanine ligase	PFAM	PF02569	Pantoate_ligase	coord: 1..60 score: 8.
None	No IPR available	unknown	Coil	Coil	coord: 23..43 scor
None	No IPR available	GENE3D	G3DSA:3.30.1300.10		coord: 1..60 score: 1.2
None	No IPR available	unknown	SSF52374	Nucleotidylyl transferase	coord: 1..60 score: 7.69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014350	CSPI06G21860	Wild cucumber (PI 183967)	cpimeB494
MELO3C014350	CsGy6G021140	Cucumber (Gy14) v2	cgybmeB433
MELO3C014350	CsaV3_6G036910	Cucumber (Chinese Long) v3	cucmeB504

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None