MELO3C014285 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014285
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP synthase subunit beta
Locationchr5 : 4269488 .. 4269667 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGTTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGA

mRNA sequence

ATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGTTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGA

Coding sequence (CDS)

ATGGGAGAAGAAGCAACTGAAAGAATGGAAGAGATGGGGTCGATGGTGGAACACGTATTCCCTACACCTCAAATTCAGCCAACGTTTGAAGCAACTCCAAATGAAGGTAACGAGGCCGAAACCATGGAAGAGCAAGAAGGAGCAGGGGATGCTGTTGAAGAACCCATCCAAACCACTTGA

Protein sequence

MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT*
Homology
[Close]
BLAST of MELO3C014285 vs. TrEMBL
Match: A0A0A0LIC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222080 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 9.4e-19
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 1   MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 60
           MGE ATERMEE+G MVEHVFPTPQ +PTFE TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 102 MGEGATERMEEIGLMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]
BLAST of MELO3C014285 vs. NCBI nr
Match: gi|659096842|ref|XP_008449317.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 1   MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 60
           MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT
Sbjct: 102 MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]
BLAST of MELO3C014285 vs. NCBI nr
Match: gi|449455302|ref|XP_004145392.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 1   MGEEATERMEEMGSMVEHVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 60
           MGE ATERMEE+G MVEHVFPTPQ +PTFE TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 102 MGEGATERMEEIGLMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

The following BLAST results are available for this feature:
BLAST of MELO3C014285 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIC1_CUCSA9.4e-1981.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G222080 PE=4 SV=1[more]
BLAST of MELO3C014285 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096842|ref|XP_008449317.1|2.0e-25100.00PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis melo][more]
gi|449455302|ref|XP_004145392.1|1.4e-1881.36PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003824 catalytic activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU50510melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014285T1MELO3C014285T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU50510MU50510transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C014285Csa2G222080Cucumber (Chinese Long) v2cumeB141
MELO3C014285ClCG06G006470Watermelon (Charleston Gray)mewcgB389
MELO3C014285Cla97C06G115990Watermelon (97103) v2mewmbB389
MELO3C014285Bhi12G001491Wax gourdmewgoB451
MELO3C014285CSPI02G10980Wild cucumber (PI 183967)cpimeB143
MELO3C014285CmaCh17G002100Cucurbita maxima (Rimu)cmameB339
MELO3C014285CmoCh17G002030Cucurbita moschata (Rifu)cmomeB332
MELO3C014285Cp4.1LG12g01790Cucurbita pepo (Zucchini)cpemeB138
MELO3C014285Carg10045Silver-seed gourdcarmeB0234
MELO3C014285CsaV3_2G013430Cucumber (Chinese Long) v3cucmeB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014285Cucumber (Gy14) v1cgymeB435
MELO3C014285Cucumber (Gy14) v1cgymeB634
MELO3C014285Cucurbita maxima (Rimu)cmameB235
MELO3C014285Cucurbita maxima (Rimu)cmameB762
MELO3C014285Cucurbita maxima (Rimu)cmameB846
MELO3C014285Cucurbita moschata (Rifu)cmomeB222
MELO3C014285Cucurbita moschata (Rifu)cmomeB753
MELO3C014285Cucurbita moschata (Rifu)cmomeB829
MELO3C014285Wild cucumber (PI 183967)cpimeB137
MELO3C014285Wild cucumber (PI 183967)cpimeB227
MELO3C014285Cucumber (Chinese Long) v2cumeB138
MELO3C014285Cucumber (Chinese Long) v2cumeB233
MELO3C014285Watermelon (Charleston Gray)mewcgB386
MELO3C014285Watermelon (Charleston Gray)mewcgB403
MELO3C014285Watermelon (97103) v1mewmB414
MELO3C014285Watermelon (97103) v1mewmB431
MELO3C014285Cucurbita pepo (Zucchini)cpemeB239
MELO3C014285Cucurbita pepo (Zucchini)cpemeB311
MELO3C014285Cucurbita pepo (Zucchini)cpemeB579
MELO3C014285Cucurbita pepo (Zucchini)cpemeB805
MELO3C014285Bottle gourd (USVL1VR-Ls)lsimeB026
MELO3C014285Bottle gourd (USVL1VR-Ls)lsimeB363
MELO3C014285Bottle gourd (USVL1VR-Ls)lsimeB365
MELO3C014285Cucumber (Gy14) v2cgybmeB123
MELO3C014285Cucumber (Gy14) v2cgybmeB118
MELO3C014285Cucumber (Gy14) v2cgybmeB196
MELO3C014285Silver-seed gourdcarmeB0330
MELO3C014285Silver-seed gourdcarmeB0838
MELO3C014285Silver-seed gourdcarmeB0940
MELO3C014285Cucumber (Chinese Long) v3cucmeB139
MELO3C014285Cucumber (Chinese Long) v3cucmeB233
MELO3C014285Watermelon (97103) v2mewmbB385
MELO3C014285Watermelon (97103) v2mewmbB406
MELO3C014285Wax gourdmewgoB469
MELO3C014285Melon (DHL92) v3.5.1memeB148