MELO3C014210 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014210
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	F-box protein
Location	chr8 : 29261496 .. 29261790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGACAAAGGCAAGAATTGTTGCAAGATAG

mRNA sequence

ATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGACAAAGGCAAGAATTGTTGCAAGATAG

Coding sequence (CDS)

ATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGACAAAGGCAAGAATTGTTGCAAGATAG

Protein sequence

MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCYLPFLWHRLDPSKLNLVDLVFVIDMISSLDKGKNCCKI

Homology

[Close]

BLAST of MELO3C014210 vs. TrEMBL
Match: A0A0A0LDE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-15
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 2   AACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCY 61
           A+CVCKSWS+++ASDHLWEPI   NFPSLFN   ++  TSP +SF RLFGLG+IAA R  
Sbjct: 33  ASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSPHVSFRRLFGLGYIAAAR-- 92

Query: 62  LPFLWHRLDPSK--LNLVDLVFVIDM 86
                 R   SK  L+L DLVFVI +
Sbjct: 93  -----RRPAQSKPSLSLSDLVFVISI 110

[Close]

BLAST of MELO3C014210 vs. TrEMBL
Match: W9RIU5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015511 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-08
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 1   MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
           MA+CVCKSWS++++S+HLW+PI   +FPSL N    S      L + RL+ + H A+ R 
Sbjct: 38  MASCVCKSWSVSMSSNHLWKPICTSHFPSLSNHLPLS------LPYRRLYAVAHAASLR- 97

Query: 61  YLPFLWHRLDPSK--LNLVDLVFVIDMISS 89
                  R  P K  L L DL+F +++ SS
Sbjct: 98  ------RRQAPPKPRLALSDLIFTLNITSS 114

[Close]

BLAST of MELO3C014210 vs. TrEMBL
Match: A0A059A116_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01581 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1   MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
           +A+CVCKSW  +++SD+LW+P  A  FPSL     +  +T P L + R++ LG +AA+RC
Sbjct: 26  VASCVCKSWRASMSSDNLWKPACASLFPSL----SALQSTDPALPYHRIYALG-LAASRC 85

Query: 61  YLPFLWHRLDPSK--LNLVDLVFVIDMIS 88
                     P+K  L+L DLVFV+D+ S
Sbjct: 86  ------RARSPAKPRLSLDDLVFVVDVRS 103

[Close]

BLAST of MELO3C014210 vs. TrEMBL
Match: I1JGE4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G191900 PE=4 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-07
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 1  MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
          MA+CV KSW  +++SD +W+PILA +FPSL     +  +++P +++ RLF +GH A T  
Sbjct: 23 MASCVSKSWFSSMSSDIIWKPILATHFPSL----STLPSSAPTVAYRRLFSMGHTATT-- 82

Query: 61 YLPFLWHRL-DPSK--LNLVDLVFVIDM 86
                HRL  PSK  L+L DLVF + +
Sbjct: 83 ------HRLRGPSKPSLSLGDLVFAVSI 98

[Close]

BLAST of MELO3C014210 vs. TrEMBL
Match: M5X8T8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025502mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1


Query: 1   MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
           +A+CVCKSW I+++SDHLW+PI   NFPSL    +    T+P + + RL+ +G  AA R 
Sbjct: 21  VASCVCKSWLISMSSDHLWKPICTSNFPSLSTLKI----TNPTVPYRRLYVIGCSAAKR- 80

Query: 61  YLPFLWHRLDPSK--LNLVDLVFVIDMISSLDKGKN 95
                  R  P K  L L +L+F I++    +   N
Sbjct: 81  ------RRQTPPKPRLLLDNLIFTINIFRHNNSSSN 105

[Close]

BLAST of MELO3C014210 vs. NCBI nr
Match: gi|659096654|ref|XP_008449214.1| (PREDICTED: probable F-box protein At5g04010 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 2   AACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCY 61
           A+CVCKSWS+++ASDHLWEPI   NFPSLFN   S+ T+SPP+SF RLFGLG+IAA R  
Sbjct: 33  ASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LASAPTSSPPVSFRRLFGLGYIAAARRR 92

Query: 62  LPFLWHRLDPSKLNLVDLVFVIDMISSLDKGKN 95
                 +L P+ L+L DLVFVI  IS  DK ++
Sbjct: 93  PA----QLKPT-LSLSDLVFVIS-ISFTDKDQS 118

[Close]

BLAST of MELO3C014210 vs. NCBI nr
Match: gi|778688654|ref|XP_011652804.1| (PREDICTED: probable F-box protein At5g04010 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 2   AACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCY 61
           A+CVCKSWS+++ASDHLWEPI   NFPSLFN   ++  TSP +SF RLFGLG+IAA R  
Sbjct: 33  ASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSPHVSFRRLFGLGYIAAAR-- 92

Query: 62  LPFLWHRLDPSK--LNLVDLVFVIDM 86
                 R   SK  L+L DLVFVI +
Sbjct: 93  -----RRPAQSKPSLSLSDLVFVISI 110

[Close]

BLAST of MELO3C014210 vs. NCBI nr
Match: gi|700202953|gb|KGN58086.1| (hypothetical protein Csa_3G497390 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-15
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 2   AACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCY 61
           A+CVCKSWS+++ASDHLWEPI   NFPSLFN   ++  TSP +SF RLFGLG+IAA R  
Sbjct: 33  ASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSPHVSFRRLFGLGYIAAAR-- 92

Query: 62  LPFLWHRLDPSK--LNLVDLVFVIDM 86
                 R   SK  L+L DLVFVI +
Sbjct: 93  -----RRPAQSKPSLSLSDLVFVISI 110

[Close]

BLAST of MELO3C014210 vs. NCBI nr
Match: gi|1009159897|ref|XP_015898063.1| (PREDICTED: probable F-box protein At5g04010 [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-10
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 1   MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
           +A+CVCKSWSI+++SDHLW+PI A++FPSL N         P +S+ RL+   H ++   
Sbjct: 36  IASCVCKSWSISMSSDHLWKPICANHFPSLSN-------LHPTVSYRRLYATAHSSSK-- 95

Query: 61  YLPFLWHRLD---PSK--LNLVDLVFVIDMISSLDKGKNCC 97
                 HRL    PSK  L+L DL+F ++++      K+CC
Sbjct: 96  ------HRLQLKTPSKPRLSLADLIFAVNIVP-----KSCC 116

[Close]

BLAST of MELO3C014210 vs. NCBI nr
Match: gi|1012036867|ref|XP_015953374.1| (PREDICTED: probable F-box protein At5g04010 [Arachis duranensis])

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRC 60
           +A+CV  SWS +++SDHLW P L  +FPSL N   SS   +  +S  RLFG+GH A  R 
Sbjct: 31  IASCVSNSWSSSMSSDHLWIPFLTAHFPSLSNLPSSS---ADAVSCRRLFGIGHSAVKR- 90

Query: 61  YLPFLWHRLDPS--KLNLVDLVFVIDMISSLD 91
                  R +P+  KL+L DLVF +  ISS D
Sbjct: 91  ------RRKNPTKLKLSLADLVFAVS-ISSAD 111

The following BLAST results are available for this feature:

BLAST of MELO3C014210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE5_CUCSA	3.6e-15	58.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G497390 PE=4 SV=1	[more]
W9RIU5_9ROSA	7.2e-08	41.11	Uncharacterized protein OS=Morus notabilis GN=L484_015511 PE=4 SV=1	[more]
A0A059A116_EUCGR	1.6e-07	42.70	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01581 PE=4 ...	[more]
I1JGE4_SOYBN	2.7e-07	43.18	Uncharacterized protein OS=Glycine max GN=GLYMA_02G191900 PE=4 SV=2	[more]
M5X8T8_PRUPE	4.7e-07	38.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025502mg PE=4 SV=1	[more]

BLAST of MELO3C014210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096654\|ref\|XP_008449214.1\|	7.1e-17	59.14	PREDICTED: probable F-box protein At5g04010 [Cucumis melo]	[more]
gi\|778688654\|ref\|XP_011652804.1\|	5.1e-15	58.14	PREDICTED: probable F-box protein At5g04010 [Cucumis sativus]	[more]
gi\|700202953\|gb\|KGN58086.1\|	5.1e-15	58.14	hypothetical protein Csa_3G497390 [Cucumis sativus]	[more]
gi\|1009159897\|ref\|XP_015898063.1\|	8.4e-10	40.59	PREDICTED: probable F-box protein At5g04010 [Ziziphus jujuba]	[more]
gi\|1012036867\|ref\|XP_015953374.1\|	6.0e-08	45.65	PREDICTED: probable F-box protein At5g04010 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014210T1	MELO3C014210T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 2..81 score: 3.9
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 2..32 score: 6.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014210	Silver-seed gourd	carmeB0481
MELO3C014210	Wax gourd	mewgoB647
MELO3C014210	Cucumber (Chinese Long) v2	cumeB490
MELO3C014210	Bottle gourd (USVL1VR-Ls)	lsimeB161