MELO3C014092 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014092
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr6 : 31888566 .. 31888976 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGCAGATGTTGGAAATCAGTACTGACTGGATGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTCGAGGGCTCTAAATGCGCTTTTCAATGGAATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

mRNA sequence

ATGGATAGCAGATGTTGGAAATCAGTACTGACTGGATGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTCGAGGGCTCTAAATGCGCTTTTCAATGGAATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

Coding sequence (CDS)

ATGGATAGCAGATGTTGGAAATCAGTACTGACTGGATGGGAGCTACCCTCCATTAAAGATGCTGCTGGAAAAACTACTCTGAAACCTGAGATCACCTGGACAAAGGAAGTAGATGAAGAGTCTCTTGGAAACTCGAGGGCTCTAAATGCGCTTTTCAATGGAATAAACCATAATGTCTTCAAACTTATCAATACATGTACCTCAGCGAAGGAAGCCTGGAATATTCTGGAAGTTACTTATGAAGGAACCTCTAAAGTCAAAGTATTAAGACTTCAGATCCTAACTTCACGATTTGAAGCACTCAAGATAAACGATGATGAAACTATAGCGAAATTCAATGTTTGGATGCTGGATTTGGTCAATGAATCTTTTGCCATTTGCGAAAAAATCGCTAAATCCAAGATGGTGTAG

Protein sequence

MDSRCWKSVLTGWELPSIKDAAGKTTLKPEITWTKEVDEESLGNSRALNALFNGINHNVFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLVNESFAICEKIAKSKMV*

Homology

[Close]

BLAST of MELO3C014092 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-36
Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL++T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFHMNILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E+I   K+V
Sbjct: 155 IANACTALGERITDEKLV 172

[Close]

BLAST of MELO3C014092 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.9e-36
Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL++T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E+I   K+V
Sbjct: 155 IANACTALGERITDEKLV 172

[Close]

BLAST of MELO3C014092 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 8   LDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKN 67

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL+ T+EGTSKVK+ RLQ+L ++FE LK+ ++E I +F++ +L+
Sbjct: 68  IFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILE 127

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E++   K+V
Sbjct: 128 IANACTALGERMTDEKLV 145

[Close]

BLAST of MELO3C014092 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL+ T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMTILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E++   K+V
Sbjct: 155 IANACTALGERMTDEKLV 172

[Close]

BLAST of MELO3C014092 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 74/138 (53.62%), Postives = 103/138 (74.64%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+  WE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL+ T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E++   K+V
Sbjct: 155 IANACTALGERMTDEKLV 172

[Close]

BLAST of MELO3C014092 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 87/136 (63.97%), Postives = 111/136 (81.62%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTTLKPEITWTKEVDEESLGNSRALNALFNGINHNVF 60
           +DS+CWK+++ G E PS KD AGK TLK EITW+K+ DE + GNSRALNA+FNG++ N+F
Sbjct: 42  IDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIF 101

Query: 61  KLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLV 120
           K INTC  AKEAWNILE  YEGTSKVK+ +LQIL+S+FEA+K+ +DETI +FNV +LDL 
Sbjct: 102 KWINTCLFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLA 161

Query: 121 NESFAICEKIAKSKMV 137
           NESFA+ EK+  +K V
Sbjct: 162 NESFALSEKLTNTKQV 177

[Close]

BLAST of MELO3C014092 vs. NCBI nr
Match: gi|29423270|gb|AAO73521.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL++T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFHMNILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E+I   K+V
Sbjct: 155 IANACTALGERITDEKLV 172

[Close]

BLAST of MELO3C014092 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-36
Identity = 76/138 (55.07%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 35  LDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKN 94

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL++T+EGTSKVK+ RLQ+L ++FE LK+ ++E I  F++ +L+
Sbjct: 95  IFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILE 154

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E+I   K+V
Sbjct: 155 IANACTALGERITDEKLV 172

[Close]

BLAST of MELO3C014092 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 74/136 (54.41%), Postives = 102/136 (75.00%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTTLKPEITWTKEVDEESLGNSRALNALFNGINHNVF 60
           +D R WK++++GWE P+ KD  GK T K E+ W  E D+ ++GNSRALN LFN ++ N+F
Sbjct: 172 LDMRSWKAIISGWEHPTKKDEFGKVTRKSELKWMSEEDDATVGNSRALNTLFNVVDQNIF 231

Query: 61  KLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLV 120
           KLINT   AK AW ILEV YEGTS +K+ R+QILTS F+ALK+ +DETIA+F V +L++ 
Sbjct: 232 KLINTYKFAKAAWEILEVAYEGTSNIKMSRMQILTSHFKALKMEEDETIAEFIVRVLNIA 291

Query: 121 NESFAICEKIAKSKMV 137
           NE + + EK++ SK+V
Sbjct: 292 NELYTLGEKMSDSKLV 307

[Close]

BLAST of MELO3C014092 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-35
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MDSRCWKSVLTGWELPSIKDAAGKTT--LKPEITWTKEVDEESLGNSRALNALFNGINHN 60
           +DSR WK+V+ GWE P + D  GK T  LKPE  WTKE DE +LGNS+ALNALFNG++ N
Sbjct: 8   LDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKN 67

Query: 61  VFKLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLD 120
           +F+LINTCT AK+AW IL+ T+EGTSKVK+ RLQ+L ++FE LK+ ++E I +F++ +L+
Sbjct: 68  IFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILE 127

Query: 121 LVNESFAICEKIAKSKMV 137
           + N   A+ E++   K+V
Sbjct: 128 IANACTALGERMTDEKLV 145

The following BLAST results are available for this feature:

BLAST of MELO3C014092 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84VI4_SOYBN	2.3e-36	55.07	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VH8_SOYBN	3.9e-36	55.07	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
O65147_SOYBN	1.1e-35	54.35	Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2	[more]
Q84VH6_SOYBN	1.1e-35	54.35	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
V9H042_SOYBN	1.3e-34	53.62	Gag-protease polyprotein OS=Glycine max PE=2 SV=1	[more]

BLAST of MELO3C014092 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072224\|ref\|XP_008464095.1\|	1.1e-44	63.97	PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]	[more]
gi\|29423270\|gb\|AAO73521.1\|	3.3e-36	55.07	gag-pol polyprotein [Glycine max]	[more]
gi\|29423279\|gb\|AAO73527.1\|	5.6e-36	55.07	gag-pol polyprotein [Glycine max]	[more]
gi\|659129626\|ref\|XP_008464761.1\|	1.3e-35	54.41	PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo]	[more]
gi\|3777527\|gb\|AAC64917.1\|	1.6e-35	54.35	gag-pol polyprotein [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014092T1	MELO3C014092T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 44..133 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014092	Wax gourd	mewgoB506
MELO3C014092	Cucumber (Gy14) v1	cgymeB013
MELO3C014092	Cucurbita maxima (Rimu)	cmameB290
MELO3C014092	Cucurbita maxima (Rimu)	cmameB764
MELO3C014092	Cucurbita moschata (Rifu)	cmomeB283
MELO3C014092	Cucurbita moschata (Rifu)	cmomeB756
MELO3C014092	Wild cucumber (PI 183967)	cpimeB240
MELO3C014092	Cucumber (Chinese Long) v2	cumeB243
MELO3C014092	Watermelon (Charleston Gray)	mewcgB415
MELO3C014092	Watermelon (97103) v1	mewmB447
MELO3C014092	Cucurbita pepo (Zucchini)	cpemeB185
MELO3C014092	Cucurbita pepo (Zucchini)	cpemeB814
MELO3C014092	Bottle gourd (USVL1VR-Ls)	lsimeB446
MELO3C014092	Cucumber (Gy14) v2	cgybmeB209
MELO3C014092	Silver-seed gourd	carmeB0003
MELO3C014092	Silver-seed gourd	carmeB0006
MELO3C014092	Watermelon (97103) v2	mewmbB430
MELO3C014092	Cucumber (Chinese Long) v3	cucmeB246