MELO3C014044 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C014044
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative
Locationchr6 : 32484305 .. 32484583 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTCACGTATAAAGATTGTCATGAGATGTTACCATTTGCATTACATGGCTATCGAATGTCAGTTCGCACATCAACTGAGGCAACTCCATTCTCGCTAGTGTATGGTGTAGAAGTTGTTTTGCCTATCGAGATTGAGGTGCCATTCCTTAGGATAATCAAAGAAGCAAAGCTAAAGGAAGTTGAGTGGACACAGGCGAGGTACGAGGAGTTAAATCTCATAAAAGAGAGAAGGTTGGCTACATTGTACAGAGGACAACTATGTCAACGAAAATGA

mRNA sequence

ATGACTGTCACGTATAAAGATTGTCATGAGATGTTACCATTTGCATTACATGGCTATCGAATGTCAGTTCGCACATCAACTGAGGCAACTCCATTCTCGCTAGTGTATGGTGTAGAAGTTGTTTTGCCTATCGAGATTGAGGTGCCATTCCTTAGGATAATCAAAGAAGCAAAGCTAAAGGAAGTTGAGTGGACACAGGCGAGGTACGAGGAGTTAAATCTCATAAAAGAGAGAAGGTTGGCTACATTGTACAGAGGACAACTATGTCAACGAAAATGA

Coding sequence (CDS)

ATGACTGTCACGTATAAAGATTGTCATGAGATGTTACCATTTGCATTACATGGCTATCGAATGTCAGTTCGCACATCAACTGAGGCAACTCCATTCTCGCTAGTGTATGGTGTAGAAGTTGTTTTGCCTATCGAGATTGAGGTGCCATTCCTTAGGATAATCAAAGAAGCAAAGCTAAAGGAAGTTGAGTGGACACAGGCGAGGTACGAGGAGTTAAATCTCATAAAAGAGAGAAGGTTGGCTACATTGTACAGAGGACAACTATGTCAACGAAAATGA

Protein sequence

MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLKEVEWTQARYEELNLIKERRLATLYRGQLCQRK*
Homology
[Close]
BLAST of MELO3C014044 vs. TrEMBL
Match: A0A151SZA6_CAJCA (Pol polyprotein OS=Cajanus cajan GN=KK1_015582 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.1e-29
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           + VTYKD HEM+PFALHGYR SVRTS  ATPFSLVYG+E VLPIE+E+P LR++ EAKL+
Sbjct: 112 LMVTYKDWHEMIPFALHGYRTSVRTSIGATPFSLVYGMEAVLPIEVEIPSLRVLTEAKLE 171

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           EVEW Q R ++LNLI+E+RL  +  GQLCQ++
Sbjct: 172 EVEWVQTRLDQLNLIEEKRLNAICHGQLCQKR 203

[Close]
BLAST of MELO3C014044 vs. TrEMBL
Match: A0A151QLV6_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_048524 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-28
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M V++KD HEMLPFALHGYR SVRTST ATPFSLVYG+E VLP+E+E+P LRII EAKL 
Sbjct: 365 MVVSFKDWHEMLPFALHGYRTSVRTSTRATPFSLVYGMEAVLPVEVEIPSLRIIMEAKLS 424

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E EW Q+RY++LNLI+E+ L  +  GQ  QRK
Sbjct: 425 EAEWVQSRYDQLNLIEEKWLNAICHGQAYQRK 456

[Close]
BLAST of MELO3C014044 vs. TrEMBL
Match: Q2HW89_MEDTR (Integrase, catalytic region; Ribonuclease H OS=Medicago truncatula GN=MtrDRAFT_AC147774g2v1 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-28
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M VTYKD HEMLP+AL+GYR SVRTST ATPFSLVYG+E VLP+E+E+P LR++ EA+L 
Sbjct: 812 MVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAELS 871

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E EW Q+RY++LNLI+E+R+A L  GQL Q +
Sbjct: 872 EAEWCQSRYDQLNLIEEKRMAALCHGQLYQSR 903

[Close]
BLAST of MELO3C014044 vs. TrEMBL
Match: A0A151RXD7_CAJCA (Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_031171 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M VTYKD H+ML FALHGYR S+RTST ATP+SLVYG+E VLPIE+E+P LR++ EAKL+
Sbjct: 110 MVVTYKDWHDMLAFALHGYRTSIRTSTGATPYSLVYGMEAVLPIEVEIPSLRVLAEAKLE 169

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E EW Q RY++LNLI+E+RL  L  GQL Q++
Sbjct: 170 EAEWVQIRYDQLNLIEEKRLNALCHGQLYQKR 201

[Close]
BLAST of MELO3C014044 vs. TrEMBL
Match: A0A151SZT2_CAJCA (Pol polyprotein OS=Cajanus cajan GN=KK1_015758 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M VTYKD HEMLP+ALHGYR SVRTST ATPFSLVYG+E VLPIE+++P LR++ EAKL 
Sbjct: 112 MVVTYKDWHEMLPYALHGYRKSVRTSTGATPFSLVYGMEAVLPIEVDIPSLRLLMEAKLP 171

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E+EW + R+++LNLI+E+RL  +  GQ  QR+
Sbjct: 172 EIEWVRTRFDQLNLIEEKRLDAICHGQTYQRR 203

[Close]
BLAST of MELO3C014044 vs. NCBI nr
Match: gi|659115472|ref|XP_008457575.1| (PREDICTED: uncharacterized protein LOC103497240 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 7.9e-34
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           MTV YKD HEMLPFALHGYR SVRTS  ATPFSLVYGVEVVLPIE+EVP LRIIKE +L+
Sbjct: 40  MTVMYKDWHEMLPFALHGYRTSVRTSNGATPFSLVYGVEVVLPIEVEVPSLRIIKERELE 99

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           EVEWTQARY+ELNLIKERRL  L RGQL Q+K
Sbjct: 100 EVEWTQARYKELNLIKERRLTALCRGQLYQKK 131

[Close]
BLAST of MELO3C014044 vs. NCBI nr
Match: gi|828329454|ref|XP_012574247.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101497477 [Cicer arietinum])

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-30
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1    MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
            M +TYKD HEMLPFALHGYR SVRTST ATPFSLVYG+EVVLPIE+E+P LR++ E+KL+
Sbjct: 1952 MVITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVEIPSLRVLMESKLE 2011

Query: 61   EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
            E EW Q R+++LNLI+E+RLA L  GQL Q++
Sbjct: 2012 ESEWVQTRFDQLNLIEEKRLAALCHGQLYQKR 2043

[Close]
BLAST of MELO3C014044 vs. NCBI nr
Match: gi|828335798|ref|XP_012575508.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105853036 [Cicer arietinum])

HSP 1 Score: 137.9 bits (346), Expect = 9.1e-30
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M +TYKD HEMLPFALHGYR SVRTST ATPFSLVYG+E VLPIE+E+P L+++ EAKL+
Sbjct: 846 MVITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPIEVEIPSLKVLMEAKLE 905

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E EW Q R+++LNLI+E+RLATL  GQL Q++
Sbjct: 906 ESEWIQTRFDQLNLIEEKRLATLCHGQLDQKR 937

[Close]
BLAST of MELO3C014044 vs. NCBI nr
Match: gi|828311019|ref|XP_012571195.1| (PREDICTED: uncharacterized protein LOC105852123 [Cicer arietinum])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 1   MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
           M +TYKD HEMLPFALHGYR SVRTST ATPFSLVYG+E VLPIE+E+P LR++ EAKL+
Sbjct: 41  MVITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPIEVEIPSLRVLMEAKLE 100

Query: 61  EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
           E EW Q R+++LNLI+E+RLA L  GQL Q++
Sbjct: 101 ESEWIQTRFDQLNLIEEKRLAALCHGQLYQKR 132

[Close]
BLAST of MELO3C014044 vs. NCBI nr
Match: gi|828338742|ref|XP_012567583.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101488624 [Cicer arietinum])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 1    MTVTYKDCHEMLPFALHGYRMSVRTSTEATPFSLVYGVEVVLPIEIEVPFLRIIKEAKLK 60
            M +TYKD HEMLPFALHGYR SVRTST ATPFSLVYG+E VLPIE+E+P LR++ EAKL+
Sbjct: 1949 MVITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPIEVEIPSLRVLMEAKLE 2008

Query: 61   EVEWTQARYEELNLIKERRLATLYRGQLCQRK 93
            E EW Q R+++LNLI+E+RLA L  GQL Q++
Sbjct: 2009 ESEWIQTRFDQLNLIEEKRLAALCHGQLYQKR 2040

The following BLAST results are available for this feature:
BLAST of MELO3C014044 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151SZA6_CAJCA3.1e-2967.39Pol polyprotein OS=Cajanus cajan GN=KK1_015582 PE=4 SV=1[more]
A0A151QLV6_CAJCA1.6e-2868.48Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_048524 PE=4 SV=1[more]
Q2HW89_MEDTR2.0e-2866.30Integrase, catalytic region; Ribonuclease H OS=Medicago truncatula GN=MtrDRAFT_A... [more]
A0A151RXD7_CAJCA3.5e-2866.30Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_031171 PE=4 SV=1[more]
A0A151SZT2_CAJCA5.9e-2865.22Pol polyprotein OS=Cajanus cajan GN=KK1_015758 PE=4 SV=1[more]
BLAST of MELO3C014044 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115472|ref|XP_008457575.1|7.9e-3482.61PREDICTED: uncharacterized protein LOC103497240 [Cucumis melo][more]
gi|828329454|ref|XP_012574247.1|7.0e-3069.57PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101497477 [Cicer arie... [more]
gi|828335798|ref|XP_012575508.1|9.1e-3069.57PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105853036 [Cicer arie... [more]
gi|828311019|ref|XP_012571195.1|1.2e-2969.57PREDICTED: uncharacterized protein LOC105852123 [Cicer arietinum][more]
gi|828338742|ref|XP_012567583.1|1.2e-2969.57PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101488624 [Cicer arie... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014044T1MELO3C014044T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C014044Cucumber (Chinese Long) v3cucmeB246
MELO3C014044Wax gourdmewgoB506
MELO3C014044Cucumber (Gy14) v1cgymeB013
MELO3C014044Cucurbita maxima (Rimu)cmameB290
MELO3C014044Cucurbita maxima (Rimu)cmameB764
MELO3C014044Cucurbita moschata (Rifu)cmomeB283
MELO3C014044Cucurbita moschata (Rifu)cmomeB756
MELO3C014044Wild cucumber (PI 183967)cpimeB240
MELO3C014044Cucumber (Chinese Long) v2cumeB243
MELO3C014044Watermelon (Charleston Gray)mewcgB415
MELO3C014044Watermelon (97103) v1mewmB447
MELO3C014044Cucurbita pepo (Zucchini)cpemeB185
MELO3C014044Cucurbita pepo (Zucchini)cpemeB814
MELO3C014044Bottle gourd (USVL1VR-Ls)lsimeB446
MELO3C014044Cucumber (Gy14) v2cgybmeB209
MELO3C014044Silver-seed gourdcarmeB0015
MELO3C014044Silver-seed gourdcarmeB0856
MELO3C014044Watermelon (97103) v2mewmbB430