MELO3C013643 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013643
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr11 : 18941124 .. 18941726 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGGTAAGAATGATGAGGGAGAAGATGCCAAGATACAATTTGATGTCGACCATTGTTACCGAAAGTAGGATTAAGTTATTGAAAAGAACGGTTTAGGTCATTATAGAAATACATGGATCGACGTGCAGTGGCTTCGACTGGAATGACGAGCTTAAGTGCATCATTGCAGAGAAGGACGTCTTCGACAGTTGAGTTAGTATAAAAAGCTAGATGAATGCGAATTTTTTACATCATTATAATCAAATACTGACGACTGTTTTTTTTTTTTCACTATTTGTACAGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

mRNA sequence

ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

Coding sequence (CDS)

ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

Protein sequence

MSDNGTFRPDYLVQLTRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRSVLVD*

Homology

[Close]

BLAST of MELO3C013643 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           + PAA  LLNK F  YDEL YVF KDRATG  AE+F DI SN P G      +   D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRSV 105
           P MY+PG+NMSP+D+M  R  +  + R+V
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNV 554

[Close]

BLAST of MELO3C013643 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 1.7e+03
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 1


Query: 2   SDNGTFRPDYLVQLTRPAA 21
           SDNGTFRP YL QL R  A
Sbjct: 390 SDNGTFRPGYLNQLARMMA 408

HSP 2 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           T PAA  LLNK FP YDEL+YVF +DR TG   +TFV++ SN P   +G Q  D  DM+ 
Sbjct: 277 THPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKN 336

Query: 76  PTMYNPGMNMS 87
           PTMY+ G NMS
Sbjct: 337 PTMYSQGFNMS 347

[Close]

BLAST of MELO3C013643 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 18  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPT 77
           PAA  LLN PFP YDEL YVF +DRATG  AETF D+ SN PGG          + +FP 
Sbjct: 433 PAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPP 492

Query: 78  MYNPGMNMSPEDMMGAR 95
           +Y+ G+++  +D+  +R
Sbjct: 493 VYSRGVDILQDDVRASR 509

[Close]

BLAST of MELO3C013643 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 41/90 (45.56%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           T PA   LLNK FP Y  L YVF KD   G                S  V  EDGL +EF
Sbjct: 58  TYPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIEF 117

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRSVL 106
           PTM +P MN+S +DMM  + G+  DCRS L
Sbjct: 118 PTMCSPRMNLSLDDMMVGQSGRFSDCRSGL 147

[Close]

BLAST of MELO3C013643 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-17
Identity = 48/86 (55.81%), Postives = 54/86 (62.79%), Query Frame = 1


Query: 18  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPT 77
           P A  LLNK FP YDEL YVF KDRATG   ETF DI SN P   +G Q  DG DME PT
Sbjct: 33  PVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPT 92

Query: 78  MYNPGMNMSPEDMMGARLGKSIDCRS 104
           +Y+ G NMS ED+   R   + D R+
Sbjct: 93  IYSQGFNMSQEDVWAPRPSSASDSRT 118

[Close]

BLAST of MELO3C013643 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           + P A  LLNK FP YDE LYVF KDRATG  A++F D+ SN P G      +   D +F
Sbjct: 287 SHPVAKGLLNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGYDAFVADATPDTDF 346

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRSV 105
           P MY+ G+NMSP+D+MG R+ +  + R+V
Sbjct: 347 PPMYSQGLNMSPDDLMGTRITRVSERRNV 375

[Close]

BLAST of MELO3C013643 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           + PAA  LLNK F  YDEL YVF KDRATG  AE+F DI SN P G      +   D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRSV 105
           P MY+PG+NMSP+D+M  R  +  + R+V
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSERRNV 554

[Close]

BLAST of MELO3C013643 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 30.4 bits (67), Expect = 2.4e+03
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 1


Query: 2   SDNGTFRPDYLVQLTRPAA 21
           SDNGTFRP YL QL R  A
Sbjct: 390 SDNGTFRPGYLNQLARMMA 408

HSP 2 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPG-GSKGVQQEDGLDME 75
           + PA   LL+K FP YD+L YVF KDRATGA +ETFVD+ SNVP   +  +   D  D +
Sbjct: 63  SHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDED 122

Query: 76  FPTMYNPGMNMSPEDMMGARLGKSIDCRS 104
            PTMY+ G+++SP++M G R G++ + R+
Sbjct: 123 IPTMYSQGVHISPDEMFGIRAGQASERRN 151

[Close]

BLAST of MELO3C013643 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           + PAA  LLNK FP YDEL YVFSKD ATG  AE+F D+ SN P G          D +F
Sbjct: 60  SHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDF 119

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRSV 105
             MY+ G+NMSP+++MG R  +  + R V
Sbjct: 120 QPMYSRGLNMSPDELMGTRTARVSEGRYV 148

The following BLAST results are available for this feature:

BLAST of MELO3C013643 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	1.3e-15	51.69	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	1.7e+03	73.68	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	1.5e-11	48.05	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KQ83_CUCSA	5.5e-09	45.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1	[more]

BLAST of MELO3C013643 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068476\|ref\|XP_008444620.1\|	7.8e-17	55.81	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
gi\|659111306\|ref\|XP_008455685.1\|	1.1e-15	49.44	PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	1.9e-15	51.69	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	2.4e+03	73.68	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	7.3e-15	49.44	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013643T1	MELO3C013643T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013643	Wax gourd	mewgoB136
MELO3C013643	Cucumber (Gy14) v1	cgymeB177
MELO3C013643	Cucurbita maxima (Rimu)	cmameB499
MELO3C013643	Cucurbita maxima (Rimu)	cmameB556
MELO3C013643	Cucurbita moschata (Rifu)	cmomeB491
MELO3C013643	Cucurbita moschata (Rifu)	cmomeB545
MELO3C013643	Wild cucumber (PI 183967)	cpimeB438
MELO3C013643	Cucumber (Chinese Long) v2	cumeB446
MELO3C013643	Watermelon (Charleston Gray)	mewcgB102
MELO3C013643	Watermelon (97103) v1	mewmB116
MELO3C013643	Cucurbita pepo (Zucchini)	cpemeB265
MELO3C013643	Cucurbita pepo (Zucchini)	cpemeB666
MELO3C013643	Bottle gourd (USVL1VR-Ls)	lsimeB052
MELO3C013643	Cucumber (Gy14) v2	cgybmeB384
MELO3C013643	Silver-seed gourd	carmeB0351
MELO3C013643	Silver-seed gourd	carmeB0844
MELO3C013643	Cucumber (Chinese Long) v3	cucmeB449
MELO3C013643	Watermelon (97103) v2	mewmbB102