MELO3C013641.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013641.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NAC domain-containing protein, putative
Location	chr11 : 19719206 .. 19720893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGAGCGTAAGAAGAAGATGAGTAAGAAAGTCATGAAGAAACGATAGTTTTGTGTGATGGACCCACAATTAGAGGTAGATCAAATTCGAAGAAACAGAAAGGTAGTAAATTTATGTTTGAGAGACCAAGTCTTTTTGAGTGGTCCCTTTAGCCCTTGCACAACATACACACCCACTAAGTTAACAACATCCCAATTCCATTCATTTTATATATAAATACAAGCATTTAATATCTTGTAAACACATTTATTAATTATTAAGATCACAGCTTATTCCATGGCGGATAAAGCTCATCATCATAGCTTCCATGGCCAACTCCCTGGCTTTCGATTCCACCCAACTGAAGAAGAGCTTCTTGAATTCTATCAGAGCAAATGGTTTTTGGGAAACGCCGACATAGCTTCGATGTTATTGGATTTCTCAACATTTACCAACACGACCCTTGGGATTTACCTGGTATTATTTAATTTATGTTTCTTTTCTTTTTCTTTTCTTCTTTTTTTTTTTCTCAAAAGGTTTAATTTGTTTGATATAATTTTAATTTTTGAAGATTTGGCGAAGAATGGTGAGAGAGAGTGGTATTTCTTTGTACCAAGAGATAGAAAGCACGGTGGTTGCGGCGGGGGACGGCCTAATCGGACGACTGGAATTGGGTACTGGAAAGCCACGGGGTCGGACAGGAGAATATTGAGCTTGTCCGATCCCAAAAGATTTATTGGTTTAAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCTAGAGGAACCAAGACTGATTGGGTCATGAACGAGTATCGTCTTCCTCATAATTCCTCTCTTCCAATAATGGTAATAAAATTCATCTGCTTAGCCTTTGTAAACCTTTAAATTTTTGAGTTAAGAAATGGGAATCATTCAACACTTATGTGTCAAAAATATAATGCATAAAAGAAACACAGTTTTCTTTTGGTGGGTAAAAGGGTGGATTAATACTTATTATACAAGGCACTGTTTTTCAAAAATATTAAAAACAGGGCTAATAATAATATTATTTTTTAAAAAAATTGTGATTTGATTTGCGCAGGACATAGTGCTGTGCAAGATCTATAGAAAAGCAACATCATTGAAGGTGTTGGAGCAAAGGGCAGTGGAGGAAGAGACAAAGAACTTGCATATGAATAATAATGCTACAATACTATTAACACCTCCATTAATGGGTGAAGAAGAACAAGGTGATGATCAAGACTCATTTTGCACTCAAAACATTCCAAGGCTGAATTCAAGTGAAGTAATGGCAATGAAATTAGAAGAGATAAGTTGTGGGGAAGATGAAGAAGAAGTCGATTCAAAGGTGGCCGACGTAGGGTCATCTTCCTTGTCGTTGTCGACAACAAGCATACAAATTCCAAAAGGGTTTGGCATGCTGACTGATCTTCAAGTTCCAAAGATGAACATGGATTGGACTCAAGACCAGTTTTGGAACCAATTCAATAGTCCATGGCTTCTCAATTTCACCACTCCTAGCAATATACTTAATTTCTAAGAACCTAATTATTTGTGCTTGATTTTGTGAACGCAAACTCTAGTTATATTGTATATAGGTTCTTCTTTCTCTCTGGTTTCTCACTCCTTTTAACTAACTTTGAAATTGGGTTAGCTTCTTGTTTATTTCTATATATGAAACATGATATTTTTCATATATTGGTTAA

mRNA sequence

CCAGAGCGTAAGAAGAAGATGAGTAAGAAAGTCATGAAGAAACGATAGTTTTGTGTGATGGACCCACAATTAGAGGTAGATCAAATTCGAAGAAACAGAAAGGTAGTAAATTTATGTTTGAGAGACCAAGTCTTTTTGAGTGGTCCCTTTAGCCCTTGCACAACATACACACCCACTAAGTTAACAACATCCCAATTCCATTCATTTTATATATAAATACAAGCATTTAATATCTTGTAAACACATTTATTAATTATTAAGATCACAGCTTATTCCATGGCGGATAAAGCTCATCATCATAGCTTCCATGGCCAACTCCCTGGCTTTCGATTCCACCCAACTGAAGAAGAGCTTCTTGAATTCTATCAGAGCAAATGGTTTTTGGGAAACGCCGACATAGCTTCGATGTTATTGGATTTCTCAACATTTACCAACACGACCCTTGGGATTTACCTGATTTGGCGAAGAATGGTGAGAGAGAGTGGTATTTCTTTGTACCAAGAGATAGAAAGCACGGTGGTTGCGGCGGGGGACGGCCTAATCGGACGACTGGAATTGGGTACTGGAAAGCCACGGGGTCGGACAGGAGAATATTGAGCTTGTCCGATCCCAAAAGATTTATTGGTTTAAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCTAGAGGAACCAAGACTGATTGGGTCATGAACGAGTATCGTCTTCCTCATAATTCCTCTCTTCCAATAATGGACATAGTGCTGTGCAAGATCTATAGAAAAGCAACATCATTGAAGGTGTTGGAGCAAAGGGCAGTGGAGGAAGAGACAAAGAACTTGCATATGAATAATAATGCTACAATACTATTAACACCTCCATTAATGGGTGAAGAAGAACAAGGTGATGATCAAGACTCATTTTGCACTCAAAACATTCCAAGGCTGAATTCAAGTGAAGTAATGGCAATGAAATTAGAAGAGATAAGTTGTGGGGAAGATGAAGAAGAAGTCGATTCAAAGGTGGCCGACGTAGGGTCATCTTCCTTGTCGTTGTCGACAACAAGCATACAAATTCCAAAAGGGTTTGGCATGCTGACTGATCTTCAAGTTCCAAAGATGAACATGGATTGGACTCAAGACCAGTTTTGGAACCAATTCAATAGTCCATGGCTTCTCAATTTCACCACTCCTAGCAATATACTTAATTTCTAAGAACCTAATTATTTGTGCTTGATTTTGTGAACGCAAACTCTAGTTATATTGTATATAGGTTCTTCTTTCTCTCTGGTTTCTCACTCCTTTTAACTAACTTTGAAATTGGGTTAGCTTCTTGTTTATTTCTATATATGAAACATGATATTTTTCATATATTGGTTAA

Coding sequence (CDS)

ATGGCGGATAAAGCTCATCATCATAGCTTCCATGGCCAACTCCCTGGCTTTCGATTCCACCCAACTGAAGAAGAGCTTCTTGAATTCTATCAGAGCAAATGGTTTTTGGGAAACGCCGACATAGCTTCGATGTTATTGGATTTCTCAACATTTACCAACACGACCCTTGGGATTTACCTGATTTGGCGAAGAATGGTGAGAGAGAGTGGTATTTCTTTGTACCAAGAGATAGAAAGCACGGTGGTTGCGGCGGGGGACGGCCTAATCGGACGACTGGAATTGGGTACTGGAAAGCCACGGGGTCGGACAGGAGAATATTGA

Protein sequence

MADKAHHHSFHGQLPGFRFHPTEEELLEFYQSKWFLGNADIASMLLDFSTFTNTTLGIYLIWRRMVRESGISLYQEIESTVVAAGDGLIGRLELGTGKPRGRTGEY

Homology

[Close]

BLAST of MELO3C013641.2 vs. NCBI nr
Match: XP_008448321.1 (PREDICTED: LOW QUALITY PROTEIN: NAC transcription factor 29-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYQSKWFLG 38
          MADKAHHHSFHGQLPGFRFHPTEEELLEFY  +   G
Sbjct: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYXEQMVFG 37

[Close]

BLAST of MELO3C013641.2 vs. NCBI nr
Match: XP_011656937.1 (PREDICTED: NAC domain-containing protein 67-like [Cucumis sativus] >KGN46720.1 hypothetical protein Csa_6G127320 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYQSKWFLG 38
          MADKAHHHSFHGQLPGFRFHPTEEELLEFY  +   G
Sbjct: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYLKQMVFG 37

[Close]

BLAST of MELO3C013641.2 vs. TAIR10
Match: AT2G02450.2 (NAC domain containing protein 35)

HSP 1 Score: 42.0 bits (97), Expect = 2.7e-04
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = 0


Query: 3  DKAHHHSFHGQLPGFRFHPTEEELLEFY 31
          D+A  H     +PGFRFHPTEEEL+EFY
Sbjct: 41 DEADDHDHDMVMPGFRFHPTEEELIEFY 68

[Close]

BLAST of MELO3C013641.2 vs. TAIR10
Match: AT2G17040.1 (NAC domain containing protein 36)

HSP 1 Score: 41.2 bits (95), Expect = 4.7e-04
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 0


Query: 13 QLPGFRFHPTEEELLEFYQSKWFLG 38
          +LPGFRFHPTEEELL+FY      G
Sbjct: 6  ELPGFRFHPTEEELLDFYLKNMVYG 30

[Close]

BLAST of MELO3C013641.2 vs. TrEMBL
Match: tr|A0A1S3BJF6|A0A1S3BJF6_CUCME (LOW QUALITY PROTEIN: NAC transcription factor 29-like OS=Cucumis melo OX=3656 GN=LOC103490549 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYQSKWFLG 38
          MADKAHHHSFHGQLPGFRFHPTEEELLEFY  +   G
Sbjct: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYXEQMVFG 37

[Close]

BLAST of MELO3C013641.2 vs. TrEMBL
Match: tr|A0A0A0KAG5|A0A0A0KAG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127320 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYQSKWFLG 38
          MADKAHHHSFHGQLPGFRFHPTEEELLEFY  +   G
Sbjct: 1  MADKAHHHSFHGQLPGFRFHPTEEELLEFYLKQMVFG 37

The following BLAST results are available for this feature:

BLAST of MELO3C013641.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448321.1	1.8e-09	83.78	PREDICTED: LOW QUALITY PROTEIN: NAC transcription factor 29-like [Cucumis melo]	[more]
XP_011656937.1	2.3e-09	83.78	PREDICTED: NAC domain-containing protein 67-like [Cucumis sativus] >KGN46720.1 h...	[more]

BLAST of MELO3C013641.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02450.2	2.7e-04	64.29	NAC domain containing protein 35	[more]
AT2G17040.1	4.7e-04	68.00	NAC domain containing protein 36	[more]

BLAST of MELO3C013641.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013641.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJF6\|A0A1S3BJF6_CUCME	1.2e-09	83.78	LOW QUALITY PROTEIN: NAC transcription factor 29-like OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KAG5\|A0A0A0KAG5_CUCSA	1.5e-09	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127320 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036093	NAC_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013641.2.1	MELO3C013641.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	SUPERFAMILY	SSF101941	NAC domain	coord: 7..47

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013641.2	CsaV3_6G012740	Cucumber (Chinese Long) v3	cucmedB440

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013641.2	Cucumber (Gy14) v2	cgybmedB386
MELO3C013641.2	Cucumber (Gy14) v1	cgymedB175
MELO3C013641.2	Cucurbita maxima (Rimu)	cmamedB637
MELO3C013641.2	Cucurbita moschata (Rifu)	cmomedB624
MELO3C013641.2	Cucurbita pepo (Zucchini)	cpemedB795
MELO3C013641.2	Wild cucumber (PI 183967)	cpimedB436
MELO3C013641.2	Cucumber (Chinese Long) v2	cumedB427
MELO3C013641.2	Watermelon (Charleston Gray)	medwcgB101
MELO3C013641.2	Watermelon (97103) v1	medwmB115
MELO3C013641.2	Silver-seed gourd	carmedB0357
MELO3C013641.2	Silver-seed gourd	carmedB0855
MELO3C013641.2	Watermelon (97103) v2	medwmbB097
MELO3C013641.2	Wax gourd	medwgoB138