MELO3C013637 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013637
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Locationchr11 : 18726590 .. 18727815 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCTCAAAGTAGTGGTAAGTAGTTTGCTTTTAGAAGCTTGTTGTACCAAAGCAATAAATTTAAGTTCATGCTTCTTGGCTTCTACTAGTACTTTAATTATTATTATTTTCTTTAAAGAAGTTAGTGTTCTGCCTCTATATTTTTAATTGTGAACTTCAATTTAATTATTCAACCTTTATGTTTACTTTTGTACATTTGAATATTTGAACTCAGATTGATATCTTCCCTTCACTTTATGGTCTTTTGATAAATTCTTATTGGCTTTTTAATATATAATATAATCTGTTTAGGGAAGAGTACACTACTAAATAATATGTTTGGAACCAACTTCAGAGAGATAGATGCTTTTAAAGGGAGGTAAGTAATTCTCTTCTCCTAATGTCTTTGGTTTTTGTAGGTAAGGAACAATCCTTCTATCTTTAGTTTATTTGGGCTCTGTGGCTAAAAAGTGAAAAATTGATGTCACTTTCTAGGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATTGAGCCTTGTACACTTGTGATGAATTTGGAAGGAACTGATGGAAGAGAGCGAGGAAAAGAGGTGCATTTCTATGCCCTTTTTGGTTTTCATGTGTTTCTGTTGTTTGTACTTTCGTTTATTTTTGCCTTTTTTATTATTTTTTATTTTTTATTTTTCCACAAATATGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTGCAAATACACATATGTGTATGTACATCTGTATGTGTGTGTATGTAAGGATATATGTGTGTGTGTAAAAGTGTATGTATGTTATGTATGTATTTATGCAAACATACTTATTTTTTTGTATCATATCAAGCTAAGACGTATACTTTGGTTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGTGCTTGCCGTGTAAGATATAGTGCTAATAAATATGTGAGTGCCATTAGTTTTGTTTTTCAAATGTTTCTTTTATCTTGTAACATGTGTTTCTATTTTATTTTCTTCTAAAATTTATTGTTTCCACACTATCTTGTTTAAGAAGTTGTTATAATTTAATTTAGATGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATCTGGTTGGGGGACATGGTGTATCTTTTATAG

mRNA sequence

ATGGGCCCTCAAAGTAGTGGGAAGAGTACACTACTAAATAATATGTTTGGAACCAACTTCAGAGAGATAGATGCTTTTAAAGGGAGGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATTGAGCCTTGTACACTTGTGATGAATTTGGAAGGAACTGATGGAAGAGAGCGAGGAAAAGAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGTGCTTGCCGTATGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATCTGGTTGGGGGACATGGTGTATCTTTTATAG

Coding sequence (CDS)

ATGGGCCCTCAAAGTAGTGGGAAGAGTACACTACTAAATAATATGTTTGGAACCAACTTCAGAGAGATAGATGCTTTTAAAGGGAGGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATTGAGCCTTGTACACTTGTGATGAATTTGGAAGGAACTGATGGAAGAGAGCGAGGAAAAGAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGTGCTTGCCGTATGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATCTGGTTGGGGGACATGGTGTATCTTTTATAG

Protein sequence

MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRERGKEDDTAFEKQSALFVLAVWCHDIGREQAANKPLLKTVFQVFPLIWLGDMVYLL*
Homology
[Close]
BLAST of MELO3C013637 vs. Swiss-Prot
Match: RHD31_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-46
Identity = 93/110 (84.55%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++FGTNF E+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 48  MGPQSSGKSTLLNHLFGTNFMEMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 107

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LA+        WCHDIGREQAANKPLLKTVFQV
Sbjct: 108 RG-EDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQV 156

[Close]
BLAST of MELO3C013637 vs. Swiss-Prot
Match: RHD3_ARATH (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.6e-46
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++FGTNFRE+DAF+GRSQTTKGIW+ARCA IEPCT+VM+LEGTDGRE
Sbjct: 43  MGPQSSGKSTLLNHLFGTNFREMDAFRGRSQTTKGIWIARCAGIEPCTVVMDLEGTDGRE 102

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 103 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 151

[Close]
BLAST of MELO3C013637 vs. Swiss-Prot
Match: RHD31_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.5e-45
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN +FGTNFRE+DAF+GRSQTTKGIW+ARC  +EPCT+VM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNQLFGTNFREMDAFRGRSQTTKGIWIARCVGVEPCTVVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQS+LF LA+        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSSLFALAISDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. Swiss-Prot
Match: RHD3_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.1e-44
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++F TNFRE+DAFKGRSQTTKGIW+A+  +IEPCTLVM+LEGTDGRE
Sbjct: 43  MGPQSSGKSTLLNHLFRTNFREMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRE 102

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 103 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 151

[Close]
BLAST of MELO3C013637 vs. Swiss-Prot
Match: RHD32_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++F T+FRE+DAF GRSQTTKGIW+ARC  IEP T+ M+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNHLFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDT FEKQSALF +AV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. TrEMBL
Match: A0A0B2PPJ9_GLYSO (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine soja GN=glysoja_023350 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.0e-46
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIW+ARCADIEPCTLVM+LEGTDGRE
Sbjct: 19  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCADIEPCTLVMDLEGTDGRE 78

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 79  RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 127

[Close]
BLAST of MELO3C013637 vs. TrEMBL
Match: I1KUU5_SOYBN (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine max GN=GLYMA_08G193200 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.0e-46
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIW+ARCADIEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCADIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. TrEMBL
Match: A0A0A0K9M8_CUCSA (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucumis sativus GN=Csa_7G451350 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-45
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 94  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 153

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 154 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 202

[Close]
BLAST of MELO3C013637 vs. TrEMBL
Match: E5GCA9_CUCME (Protein SEY1 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-45
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. TrEMBL
Match: W9S4A8_9ROSA (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Morus notabilis GN=L484_005098 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-45
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++FGTNFRE+DAFKGRSQTTKGIWLA+CADIEPCTLVM+LEGTDGRE
Sbjct: 102 MGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWLAKCADIEPCTLVMDLEGTDGRE 161

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 162 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 210

[Close]
BLAST of MELO3C013637 vs. TAIR10
Match: AT1G72960.1 (AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 184.9 bits (468), Expect = 2.9e-47
Identity = 93/110 (84.55%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++FGTNF E+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 48  MGPQSSGKSTLLNHLFGTNFMEMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 107

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LA+        WCHDIGREQAANKPLLKTVFQV
Sbjct: 108 RG-EDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQV 156

[Close]
BLAST of MELO3C013637 vs. TAIR10
Match: AT3G13870.1 (AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 184.5 bits (467), Expect = 3.7e-47
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++FGTNFRE+DAF+GRSQTTKGIW+ARCA IEPCT+VM+LEGTDGRE
Sbjct: 43  MGPQSSGKSTLLNHLFGTNFREMDAFRGRSQTTKGIWIARCAGIEPCTVVMDLEGTDGRE 102

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 103 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 151

[Close]
BLAST of MELO3C013637 vs. TAIR10
Match: AT5G45160.1 (AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLN++F T+FRE+DAF GRSQTTKGIW+ARC  IEP T+ M+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNHLFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDT FEKQSALF +AV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. NCBI nr
Match: gi|734347223|gb|KHN11286.1| (Protein ROOT HAIR DEFECTIVE 3 like 1 [Glycine soja])

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-46
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIW+ARCADIEPCTLVM+LEGTDGRE
Sbjct: 19  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCADIEPCTLVMDLEGTDGRE 78

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 79  RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 127

[Close]
BLAST of MELO3C013637 vs. NCBI nr
Match: gi|356526017|ref|XP_003531616.1| (PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1 [Glycine max])

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-46
Identity = 96/110 (87.27%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIW+ARCADIEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCADIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. NCBI nr
Match: gi|720019563|ref|XP_010262124.1| (PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Nelumbo nucifera])

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-45
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAF+GRSQTTKGIWLARCADIEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFRGRSQTTKGIWLARCADIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQS+LF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSSLFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. NCBI nr
Match: gi|449447853|ref|XP_004141681.1| (PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-45
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

[Close]
BLAST of MELO3C013637 vs. NCBI nr
Match: gi|659124802|ref|XP_008462355.1| (PREDICTED: protein ROOT HAIR DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-45
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 1 

Query: 1   MGPQSSGKSTLLNNMFGTNFREIDAFKGRSQTTKGIWLARCADIEPCTLVMNLEGTDGRE 60
           MGPQSSGKSTLLNN+FGTNFRE+DAFKGRSQTTKGIWLARCA IEPCTLVM+LEGTDGRE
Sbjct: 46  MGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRE 105

Query: 61  RGKEDDTAFEKQSALFVLAV--------WCHDIGREQAANKPLLKTVFQV 103
           RG EDDTAFEKQSALF LAV        WCHDIGREQAANKPLLKTVFQV
Sbjct: 106 RG-EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 154

The following BLAST results are available for this feature:
BLAST of MELO3C013637 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHD31_ARATH5.1e-4684.55Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=... [more]
RHD3_ARATH6.6e-4683.64Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1[more]
RHD31_ORYSJ9.5e-4580.00Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica GN=Os12g... [more]
RHD3_ORYSJ8.1e-4481.82Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1[more]
RHD32_ARATH2.9e-4177.27Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=... [more]
BLAST of MELO3C013637 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2PPJ9_GLYSO6.0e-4687.27Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine soja GN=glysoja_023350 PE=3 SV=... [more]
I1KUU5_SOYBN6.0e-4687.27Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine max GN=GLYMA_08G193200 PE=3 SV=... [more]
A0A0A0K9M8_CUCSA2.3e-4587.27Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucumis sativus GN=Csa_7G451350 PE=3 SV... [more]
E5GCA9_CUCME2.3e-4587.27Protein SEY1 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
W9S4A8_9ROSA3.0e-4586.36Protein ROOT HAIR DEFECTIVE 3 homolog OS=Morus notabilis GN=L484_005098 PE=3 SV=... [more]
BLAST of MELO3C013637 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G72960.12.9e-4784.55 Root hair defective 3 GTP-binding protein (RHD3)[more]
AT3G13870.13.7e-4783.64 Root hair defective 3 GTP-binding protein (RHD3)[more]
AT5G45160.11.6e-4277.27 Root hair defective 3 GTP-binding protein (RHD3)[more]
BLAST of MELO3C013637 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734347223|gb|KHN11286.1|8.6e-4687.27Protein ROOT HAIR DEFECTIVE 3 like 1 [Glycine soja][more]
gi|356526017|ref|XP_003531616.1|8.6e-4687.27PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1 [Glycine max][more]
gi|720019563|ref|XP_010262124.1|2.5e-4586.36PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Nelumbo nucifera][more]
gi|449447853|ref|XP_004141681.1|3.3e-4587.27PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1 [Cucumis sativus][more]
gi|659124802|ref|XP_008462355.1|3.3e-4587.27PREDICTED: protein ROOT HAIR DEFECTIVE 3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008803RHD3/Sey1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013637T1MELO3C013637T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008803RHD3/Sey1PFAMPF05879RHD3coord: 1..102
score: 4.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 1..102
score: 4.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..107
score: 6.35
NoneNo IPR availablePANTHERPTHR11649MSS1/TRME-RELATED GTP-BINDING PROTEINcoord: 1..102
score: 6.6
NoneNo IPR availablePANTHERPTHR11649:SF62PROTEIN SEY1 HOMOLOGcoord: 1..102
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013637Cucurbita maxima (Rimu)cmameB499
MELO3C013637Cucurbita maxima (Rimu)cmameB556
MELO3C013637Cucurbita moschata (Rifu)cmomeB491
MELO3C013637Cucurbita moschata (Rifu)cmomeB545
MELO3C013637Wild cucumber (PI 183967)cpimeB438
MELO3C013637Cucumber (Chinese Long) v2cumeB446
MELO3C013637Watermelon (Charleston Gray)mewcgB102
MELO3C013637Watermelon (97103) v1mewmB116
MELO3C013637Cucurbita pepo (Zucchini)cpemeB265
MELO3C013637Cucurbita pepo (Zucchini)cpemeB666
MELO3C013637Cucumber (Gy14) v2cgybmeB384
MELO3C013637Silver-seed gourdcarmeB0351
MELO3C013637Silver-seed gourdcarmeB0844
MELO3C013637Cucumber (Chinese Long) v3cucmeB449
MELO3C013637Watermelon (97103) v2mewmbB102
MELO3C013637Wax gourdmewgoB136
MELO3C013637Cucumber (Gy14) v1cgymeB177