MELO3C013612 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013612
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DTW domain protein
Location	chr11 : 18153880 .. 18154260 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCATCACCAGAAACCCCGACGCCCACTCCTCCACCTCTAAACCAACAGAAACTCCGATCACCTTGCAGGAGTGGCAGGGTTGGGGCTCCACCTCTCCTGTTCCCACCATGGTTACGGAAATTATAGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTTTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTCTATATCCCTTGTAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGGCAACTTGGAATTTTAG

mRNA sequence

ATGGGTTCCATCACCAGAAACCCCGACGCCCACTCCTCCACCTCTAAACCAACAGAAACTCCGATCACCTTGCAGGAGTGGCAGGGTTGGGGCTCCACCTCTCCTGTTCCCACCATGGTTACGGAAATTATAGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTTTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTCTATATCCCTTGTAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGGCAACTTGGAATTTTAG

Coding sequence (CDS)

ATGGGTTCCATCACCAGAAACCCCGACGCCCACTCCTCCACCTCTAAACCAACAGAAACTCCGATCACCTTGCAGGAGTGGCAGGGTTGGGGCTCCACCTCTCCTGTTCCCACCATGGTTACGGAAATTATAGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTTTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTCTATATCCCTTGTAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGGCAACTTGGAATTTTAG

Protein sequence

MGSITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTFWLILQQSLLNPILNYCFYIPCNHSTHLDIANGVNGNLEF*

Homology

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BLAST of MELO3C013612 vs. TrEMBL
Match: A0A0A0KD21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 1  MGSITRNPDAHSST----SKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDA 60
          M SITRNPD ++ST    SKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEK VDA
Sbjct: 26 MDSITRNPDGYTSTSASTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKTVDA 85

Query: 61 QMSFGGNGGKLQ 69
          QMSFGGNGGKLQ
Sbjct: 86 QMSFGGNGGKLQ 97

[Close]

BLAST of MELO3C013612 vs. TrEMBL
Match: M5VH22_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 3  SITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGG 62
          S + +P   +  S   E  ITLQEWQGWG+TSP+P MVT+I+++LK LEK++DAQMSFGG
Sbjct: 15 STSGSPQREARLSDAVEGAITLQEWQGWGTTSPLPAMVTKIVEDLKALEKDIDAQMSFGG 74

Query: 63 NGGKLQ 69
          +GGKLQ
Sbjct: 75 SGGKLQ 80

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BLAST of MELO3C013612 vs. TrEMBL
Match: I1M3T3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 34/48 (70.83%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 22  ITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGGNGGKLQV 70
           ++LQEWQGWG+TSP+PTMV++I+++LKVLE+++DA M+FGGNGGKLQV
Sbjct: 53  VSLQEWQGWGTTSPLPTMVSQIVEDLKVLEEDLDAHMNFGGNGGKLQV 100

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BLAST of MELO3C013612 vs. TrEMBL
Match: A0A0R0H698_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 34/48 (70.83%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 22  ITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGGNGGKLQV 70
           ++LQEWQGWG+TSP+PTMV++I+++LKVLE+++DA M+FGGNGGKLQV
Sbjct: 53  VSLQEWQGWGTTSPLPTMVSQIVEDLKVLEEDLDAHMNFGGNGGKLQV 100

[Close]

BLAST of MELO3C013612 vs. TrEMBL
Match: A0A0R0H4K9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 34/48 (70.83%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 22  ITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGGNGGKLQV 70
           ++LQEWQGWG+TSP+PTMV++I+++LKVLE+++DA M+FGGNGGKLQV
Sbjct: 53  VSLQEWQGWGTTSPLPTMVSQIVEDLKVLEEDLDAHMNFGGNGGKLQV 100

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BLAST of MELO3C013612 vs. TAIR10
Match: AT1G03687.1 (AT1G03687.1 DTW domain-containing protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 22 ITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 69
          I+++EW+ WG  SP P+ V +I+D+LKVLE  +D+ + FGGNGGKLQ
Sbjct: 52 ISVEEWRKWGPVSPFPSAVKQIVDDLKVLECKLDSPIDFGGNGGKLQ 98

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BLAST of MELO3C013612 vs. NCBI nr
Match: gi|659095131|ref|XP_008448415.1| (PREDICTED: uncharacterized protein LOC103490620 [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-65
Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MGSITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF 60
           MGSITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF
Sbjct: 27  MGSITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF 86

Query: 61  GGNGGKLQVCHKPIGYVFRLFFYFVTFWLILQQSLLNPILNYCFYIPCNHSTHLDIANGV 120
           GGNGGKLQVCHKPIGYVFRLFFYFVTFWLILQQSLLNPILNYCFYIPCNHSTHLDIANG 
Sbjct: 87  GGNGGKLQVCHKPIGYVFRLFFYFVTFWLILQQSLLNPILNYCFYIPCNHSTHLDIANGN 146

Query: 121 N-GNLEF 127
           N G L F
Sbjct: 147 NTGKLLF 153

[Close]

BLAST of MELO3C013612 vs. NCBI nr
Match: gi|659095135|ref|XP_008448417.1| (PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 9.5e-30
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MGSITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF 60
          MGSIT NPD HSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF
Sbjct: 1  MGSITGNPDGHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSF 60

Query: 61 GGNGGKLQ 69
          GGNGGKLQ
Sbjct: 61 GGNGGKLQ 68

[Close]

BLAST of MELO3C013612 vs. NCBI nr
Match: gi|449444356|ref|XP_004139941.1| (PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-26
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 1  MGSITRNPDAHSST----SKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDA 60
          M SITRNPD ++ST    SKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEK VDA
Sbjct: 26 MDSITRNPDGYTSTSASTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKTVDA 85

Query: 61 QMSFGGNGGKLQ 69
          QMSFGGNGGKLQ
Sbjct: 86 QMSFGGNGGKLQ 97

[Close]

BLAST of MELO3C013612 vs. NCBI nr
Match: gi|595790159|ref|XP_007198832.1| (hypothetical protein PRUPE_ppa007536mg [Prunus persica])

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 3  SITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGG 62
          S + +P   +  S   E  ITLQEWQGWG+TSP+P MVT+I+++LK LEK++DAQMSFGG
Sbjct: 15 STSGSPQREARLSDAVEGAITLQEWQGWGTTSPLPAMVTKIVEDLKALEKDIDAQMSFGG 74

Query: 63 NGGKLQ 69
          +GGKLQ
Sbjct: 75 SGGKLQ 80

[Close]

BLAST of MELO3C013612 vs. NCBI nr
Match: gi|645246009|ref|XP_008229151.1| (PREDICTED: uncharacterized protein LOC103328534 [Prunus mume])

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 3   SITRNPDAHSSTSKPTETPITLQEWQGWGSTSPVPTMVTEIIDELKVLEKNVDAQMSFGG 62
           S + +P   +  S   E  ITLQEWQGWG+TSP+P MVT+I+++LK LEK++DA MSFGG
Sbjct: 37  STSGSPQREARLSDAVEGAITLQEWQGWGTTSPLPAMVTKIVEDLKALEKDIDAPMSFGG 96

Query: 63  NGGKLQ 69
           +GGKLQ
Sbjct: 97  SGGKLQ 102

The following BLAST results are available for this feature:

BLAST of MELO3C013612 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD21_CUCSA	2.0e-26	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128540 PE=4 SV=1	[more]
M5VH22_PRUPE	2.7e-15	60.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007536mg PE=4 SV=1	[more]
I1M3T3_SOYBN	1.9e-13	70.83	Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1	[more]
A0A0R0H698_SOYBN	1.9e-13	70.83	Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1	[more]
A0A0R0H4K9_SOYBN	1.9e-13	70.83	Uncharacterized protein OS=Glycine max GN=GLYMA_13G297500 PE=4 SV=1	[more]

BLAST of MELO3C013612 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03687.1	1.0e-10	55.32	DTW domain-containing protein	[more]

BLAST of MELO3C013612 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095131\|ref\|XP_008448415.1\|	3.1e-65	96.85	PREDICTED: uncharacterized protein LOC103490620 [Cucumis melo]	[more]
gi\|659095135\|ref\|XP_008448417.1\|	9.5e-30	97.06	PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo]	[more]
gi\|449444356\|ref\|XP_004139941.1\|	2.9e-26	87.50	PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus]	[more]
gi\|595790159\|ref\|XP_007198832.1\|	3.9e-15	60.61	hypothetical protein PRUPE_ppa007536mg [Prunus persica]	[more]
gi\|645246009\|ref\|XP_008229151.1\|	1.9e-14	59.09	PREDICTED: uncharacterized protein LOC103328534 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU65756	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013612T1	MELO3C013612T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU65756	MU65756	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 3..68 score: 5.3
None	No IPR available	PANTHER	PTHR21392:SF4	DTW DOMAIN-CONTAINING PROTEIN	coord: 3..68 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013612	Cucumber (Gy14) v1	cgymeB177
MELO3C013612	Cucumber (Gy14) v1	cgymeB247
MELO3C013612	Cucurbita maxima (Rimu)	cmameB496
MELO3C013612	Cucurbita maxima (Rimu)	cmameB555
MELO3C013612	Cucurbita moschata (Rifu)	cmomeB487
MELO3C013612	Cucurbita moschata (Rifu)	cmomeB543
MELO3C013612	Wild cucumber (PI 183967)	cpimeB438
MELO3C013612	Wild cucumber (PI 183967)	cpimeB519
MELO3C013612	Cucumber (Chinese Long) v2	cumeB446
MELO3C013612	Cucumber (Chinese Long) v2	cumeB514
MELO3C013612	Watermelon (Charleston Gray)	mewcgB095
MELO3C013612	Watermelon (97103) v1	mewmB109
MELO3C013612	Cucurbita pepo (Zucchini)	cpemeB263
MELO3C013612	Cucurbita pepo (Zucchini)	cpemeB661
MELO3C013612	Bottle gourd (USVL1VR-Ls)	lsimeB048
MELO3C013612	Bottle gourd (USVL1VR-Ls)	lsimeB087
MELO3C013612	Cucumber (Gy14) v2	cgybmeB384
MELO3C013612	Silver-seed gourd	carmeB0027
MELO3C013612	Silver-seed gourd	carmeB0417
MELO3C013612	Silver-seed gourd	carmeB0714
MELO3C013612	Cucumber (Chinese Long) v3	cucmeB449
MELO3C013612	Cucumber (Chinese Long) v3	cucmeB531
MELO3C013612	Watermelon (97103) v2	mewmbB097
MELO3C013612	Wax gourd	mewgoB110
MELO3C013612	Wax gourd	mewgoB121
MELO3C013612	Wax gourd	mewgoB132
MELO3C013612	Melon (DHL92) v3.5.1	memeB043