MELO3C013574.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013574.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr11 : 18089772 .. 18089978 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGAAACACCGAGCCCCAACAATGGAACCTCGAGCAACAAGGAGGGAGATTTAAGGGGATTTGATGATGGAGAACACAGAACGAAGGGGAAAAGAGTTTCGCACGAACACGGGTTGAGGGGAAAGCCTGAACACGGGTTGAAGACGACAAGGCAAAAGGGAGGGTTTCAGCCGTTTGAGGGGAGAATGAAACCGTGTTAA

mRNA sequence

ATGGCAAGCGAAACACCGAGCCCCAACAATGGAACCTCGAGCAACAAGGAGGGAGATTTAAGGGGATTTGATGATGGAGAACACAGAACGAAGGGGAAAAGAGTTTCGCACGAACACGGGTTGAGGGGAAAGCCTGAACACGGGTTGAAGACGACAAGGCAAAAGGGAGGGTTTCAGCCGTTTGAGGGGAGAATGAAACCGTGTTAA

Coding sequence (CDS)

ATGGCAAGCGAAACACCGAGCCCCAACAATGGAACCTCGAGCAACAAGGAGGGAGATTTAAGGGGATTTGATGATGGAGAACACAGAACGAAGGGGAAAAGAGTTTCGCACGAACACGGGTTGAGGGGAAAGCCTGAACACGGGTTGAAGACGACAAGGCAAAAGGGAGGGTTTCAGCCGTTTGAGGGGAGAATGAAACCGTGTTAA

Protein sequence

MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQKGGFQPFEGRMKPC

Homology

[Close]

BLAST of MELO3C013574.2 vs. NCBI nr
Match: ADN34191.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQ 55
          M SETPS NN TSS K+GDLRGFD+GEHRTKGKRV +EHGLRGKPE+GLKT RQ
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQ 54

[Close]

BLAST of MELO3C013574.2 vs. NCBI nr
Match: ADN33713.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQ 55
          M SET S NNG SS KEGDLRGFD+ EH+ K KRVSHEHGLRGKPEHGLKT RQ
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQ 54

[Close]

BLAST of MELO3C013574.2 vs. TrEMBL
Match: tr|E5GCJ2|E5GCJ2_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-15
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQ 55
          M SETPS NN TSS K+GDLRGFD+GEHRTKGKRV +EHGLRGKPE+GLKT RQ
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQ 54

[Close]

BLAST of MELO3C013574.2 vs. TrEMBL
Match: tr|E5GB71|E5GB71_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-14
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQ 55
          M SET S NNG SS KEGDLRGFD+ EH+ K KRVSHEHGLRGKPEHGLKT RQ
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQ 54

The following BLAST results are available for this feature:

BLAST of MELO3C013574.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34191.1	1.2e-14	81.48	hypothetical protein [Cucumis melo subsp. melo]	[more]
ADN33713.1	1.3e-13	79.63	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C013574.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013574.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013574.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCJ2\|E5GCJ2_CUCME	7.8e-15	81.48	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GB71\|E5GB71_CUCME	8.6e-14	79.63	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013574.2.1	MELO3C013574.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013574.2	Watermelon (97103) v2	medwmbB098
MELO3C013574.2	Wax gourd	medwgoB123
MELO3C013574.2	Cucurbita maxima (Rimu)	cmamedB585
MELO3C013574.2	Cucurbita maxima (Rimu)	cmamedB619
MELO3C013574.2	Cucurbita moschata (Rifu)	cmomedB572
MELO3C013574.2	Cucurbita moschata (Rifu)	cmomedB608
MELO3C013574.2	Cucurbita pepo (Zucchini)	cpemedB297
MELO3C013574.2	Cucurbita pepo (Zucchini)	cpemedB803
MELO3C013574.2	Wild cucumber (PI 183967)	cpimedB429
MELO3C013574.2	Bottle gourd (USVL1VR-Ls)	lsimedB051
MELO3C013574.2	Watermelon (Charleston Gray)	medwcgB098
MELO3C013574.2	Watermelon (97103) v1	medwmB112
MELO3C013574.2	Silver-seed gourd	carmedB0031
MELO3C013574.2	Silver-seed gourd	carmedB0424