MELO3C013564.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013564.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr11 : 17842698 .. 17842973 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

mRNA sequence

ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

Coding sequence (CDS)

ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

Protein sequence

MHLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQEGQIKVVEEVEEVQASEEEEREEDNFPLKHKRQGKEEA

Homology

[Close]

BLAST of MELO3C013564.2 vs. NCBI nr
Match: KGN57727.1 (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 2   HLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQ 54
           +LIEQL ++A L LEKLPQV +KD ++   TLHR+I IHKNKAK KCLKTK+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKE 139

[Close]

BLAST of MELO3C013564.2 vs. TrEMBL
Match: tr|A0A0A0LAN0|A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 2   HLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQ 54
           +LIEQL ++A L LEKLPQV +KD ++   TLHR+I IHKNKAK KCLKTK+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKE 139

The following BLAST results are available for this feature:

BLAST of MELO3C013564.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57727.1	2.2e-08	65.38	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]

BLAST of MELO3C013564.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013564.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013564.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAN0\|A0A0A0LAN0_CUCSA	1.5e-08	65.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013564.2.1	MELO3C013564.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..91

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013564.2	Silver-seed gourd	carmedB0032
MELO3C013564.2	Cucumber (Gy14) v1	cgymedB177
MELO3C013564.2	Cucurbita maxima (Rimu)	cmamedB586
MELO3C013564.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C013564.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C013564.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C013564.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C013564.2	Bottle gourd (USVL1VR-Ls)	lsimedB061