MELO3C013564 (gene) Melon (DHL92) v3.5.1

NameMELO3C013564
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranslation initiation factor IF-2
Locationchr11 : 17007109 .. 17007384 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

mRNA sequence

ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

Coding sequence (CDS)

ATGCACCTCATTGAACAACTCTACATAAAAGCCTATCTTGAGTTGGAAAAACTCCCTCAAGTAGCGATGAAGGACAGAGTTTATACTACATTAACTCTTCATCGAGTCATTGTTATCCACAAGAACAAAGCAAAGACCAAATGCCTCAAGACCAAACAAGAAGGTCAAATAAAGGTTGTGGAAGAAGTGGAAGAAGTGCAAGCAAGTGAAGAAGAAGAGAGGGAGGAAGACAACTTCCCACTTAAACACAAGAGACAAGGAAAGGAAGAGGCCTAA

Protein sequence

MHLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQEGQIKVVEEVEEVQASEEEEREEDNFPLKHKRQGKEEA*
BLAST of MELO3C013564 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1

Query: 2   HLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQEGQIKVVE 61
           +LIEQL ++A L LEKLPQV +KD ++   TLHR+I IHKNKAK KCLKTK+    KVV+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKE--GCKVVK 147

Query: 62  EVEEVQASEEEEREEDNFPLKHKRQGKEE 91
           E+++     EEE ++DN P K KRQ KE+
Sbjct: 148 EIDDDDV--EEEDKKDNIPQKRKRQDKED 172

BLAST of MELO3C013564 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1

Query: 2   HLIEQLYIKAYLELEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQEGQIKVVE 61
           +LIEQL ++A L LEKLPQV +KD ++   TLHR+I IHKNKAK KCLKTK+    KVV+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKE--GCKVVK 147

Query: 62  EVEEVQASEEEEREEDNFPLKHKRQGKEE 91
           E+++     EEE ++DN P K KRQ KE+
Sbjct: 148 EIDDDDV--EEEDKKDNIPQKRKRQDKED 172

BLAST of MELO3C013564 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-15
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 15 LEKLPQVAMKDRVYTTLTLHRVIVIHKNKAKTKCLKTKQEGQIKVVEEVEEVQASEEEER 74
          L+KL QV +KD + ++ TLH +I IHKNKAK KCLKTKQ+G+ K    V+ V   +EEE+
Sbjct: 2  LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSK----VKTVDDEDEEEK 61

Query: 75 EEDNFPLKHKRQGKEEA 92
          E+D+ PLK KRQG+EEA
Sbjct: 62 EKDDVPLKRKRQGEEEA 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA1.4e-1656.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700202594|gb|KGN57727.1|1.9e-1656.18hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|659123193|ref|XP_008461541.1|8.2e-1557.14PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013564T1MELO3C013564T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None