MELO3C013561 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013561
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative cell wall protein
Locationchr11 : 16788327 .. 16788689 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGTCGAGCAGTGATGATGATAAGAAACAGCCTTAATGGCTGATTGGATATGATAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP*
Homology
[Close]
BLAST of MELO3C013561 vs. Swiss-Prot
Match: CWPX_ARATH (Putative cell wall protein OS=Arabidopsis thaliana GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 7.8e-06
Identity = 27/69 (39.13%), Postives = 31/69 (44.93%), Query Frame = 1 

Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]
BLAST of MELO3C013561 vs. TrEMBL
Match: A0A0A0KCX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLSR-------GGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]
BLAST of MELO3C013561 vs. TrEMBL
Match: M5XEW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023037mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 1 

Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]
BLAST of MELO3C013561 vs. TrEMBL
Match: F6HIG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01830 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERV----------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P                   S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  L------SPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
           +      +PYD GS   G S S GS       YIPGGDD F+PNPG E+P PA  GGV  
Sbjct: 61  VPGYGSYTPYD-GSIPSGSSGSDGSTGGTG-SYIPGGDDTFVPNPGVEIPNPAGGGGVPT 120

[Close]
BLAST of MELO3C013561 vs. TrEMBL
Match: A5ADZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000181 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERV----------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P                   S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  L------SPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
           +      +PYD GS   G S S GS       YIPGGDD F+PNPG E+P PA  GGV  
Sbjct: 61  VPGYGSYTPYD-GSIPSGSSGSDGSTGGTG-SYIPGGDDTFVPNPGVEIPNPAGGGGVPT 120

[Close]
BLAST of MELO3C013561 vs. TrEMBL
Match: E3WHD3_9ROSI (Putative uncharacterized protein Tam-RVIP1 OS=Vitis hybrid cultivar GN=Tam-RVIP1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 46/123 (37.40%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERV----------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P                   S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGVGRVM 60

Query: 61  LSPYDK-----GSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKET 103
           +  Y       GS   G S S GS       YIPGGDD F+PNPG E+P PA  GGV   
Sbjct: 61  VPGYGSYTPYGGSIPSGSSGSDGSTGGTG-SYIPGGDDTFVPNPGVEIPNPAGGGGVPTA 120

[Close]
BLAST of MELO3C013561 vs. TAIR10
Match: AT2G20870.1 (AT2G20870.1 cell wall protein precursor, putative)

HSP 1 Score: 51.2 bits (121), Expect = 4.4e-07
Identity = 27/69 (39.13%), Postives = 31/69 (44.93%), Query Frame = 1 

Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

[Close]
BLAST of MELO3C013561 vs. NCBI nr
Match: gi|700191495|gb|KGN46699.1| (hypothetical protein Csa_6G124140 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVA---LCSTVSVLIPGIGRLTLSR-------GGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 103
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]
BLAST of MELO3C013561 vs. NCBI nr
Match: gi|645248345|ref|XP_008230254.1| (PREDICTED: putative cell wall protein [Prunus mume])

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 49/125 (39.20%), Postives = 60/125 (48.00%), Query Frame = 1 

Query: 1   MAHRITPSLFPIF---LVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P+    +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSHLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 100
             P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  FPPLHNVVPQTPFPDNGSTGNTGGSGSGEAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

[Close]
BLAST of MELO3C013561 vs. NCBI nr
Match: gi|595951892|ref|XP_007216421.1| (hypothetical protein PRUPE_ppa023037mg [Prunus persica])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 47/121 (38.84%), Postives = 60/121 (49.59%), Query Frame = 1 

Query: 1   MAHRITPSLFP---IFLVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P   I +V+LA+TG+AVA R  P +              S LIPG+GR+ 
Sbjct: 1   MADKTRTSFLPLISILVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGLGRVL 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 96
           + P           + G  G    S  G  P+    Y+PGGDD F+PNPGYEVPIP N  
Sbjct: 61  IPPRHNVVPQTPFPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGA 120

[Close]
BLAST of MELO3C013561 vs. NCBI nr
Match: gi|731409649|ref|XP_010657269.1| (PREDICTED: putative cell wall protein [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-12
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERV----------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P                   S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  L------SPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
           +      +PYD GS   G S S GS       YIPGGDD F+PNPG E+P PA  GGV  
Sbjct: 61  VPGYGSYTPYD-GSIPSGSSGSDGSTGGTG-SYIPGGDDTFVPNPGVEIPNPAGGGGVPT 120

[Close]
BLAST of MELO3C013561 vs. NCBI nr
Match: gi|147794046|emb|CAN68917.1| (hypothetical protein VITISV_000181 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERV----------------SVLIPGIGRIT 60
           MAH +  SL  + ++   + G+A+AAR+ P                   S+LIPG+GR+ 
Sbjct: 1   MAHSLQASLIALLVIFNVLLGQAIAAREVPNDSKKVDKKQPEWFIEPDGSLLIPGLGRVM 60

Query: 61  L------SPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKE 103
           +      +PYD GS   G S S GS       YIPGGDD F+PNPG E+P PA  GGV  
Sbjct: 61  VPGYGSYTPYD-GSIPSGSSGSDGSTGGTG-SYIPGGDDTFVPNPGVEIPNPAGGGGVPT 120

The following BLAST results are available for this feature:
BLAST of MELO3C013561 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CWPX_ARATH7.8e-0639.13Putative cell wall protein OS=Arabidopsis thaliana GN=At2g20870 PE=2 SV=2[more]
BLAST of MELO3C013561 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCX5_CUCSA1.2e-3276.47Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1[more]
M5XEW2_PRUPE2.3e-1238.84Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023037mg PE=4 SV=1[more]
F6HIG9_VITVI5.0e-1239.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01830 PE=4 SV=... [more]
A5ADZ0_VITVI1.1e-1138.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000181 PE=4 SV=1[more]
E3WHD3_9ROSI3.3e-1137.40Putative uncharacterized protein Tam-RVIP1 OS=Vitis hybrid cultivar GN=Tam-RVIP1... [more]
BLAST of MELO3C013561 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20870.14.4e-0739.13 cell wall protein precursor, putative[more]
BLAST of MELO3C013561 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191495|gb|KGN46699.1|1.7e-3276.47hypothetical protein Csa_6G124140 [Cucumis sativus][more]
gi|645248345|ref|XP_008230254.1|2.5e-1239.20PREDICTED: putative cell wall protein [Prunus mume][more]
gi|595951892|ref|XP_007216421.1|3.3e-1238.84hypothetical protein PRUPE_ppa023037mg [Prunus persica][more]
gi|731409649|ref|XP_010657269.1|7.2e-1239.52PREDICTED: putative cell wall protein [Vitis vinifera][more]
gi|147794046|emb|CAN68917.1|1.6e-1138.71hypothetical protein VITISV_000181 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU64644melon EST collection version 4.0transcribed_cluster
MU65101melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013561T1MELO3C013561T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU65101MU65101transcribed_cluster
MU64644MU64644transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36733FAMILY NOT NAMEDcoord: 2..102
score: 7.5