MELO3C013559 (gene) Melon (DHL92) v3.5.1

NameMELO3C013559
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUndecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
Locationchr11 : 16690765 .. 16691491 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTTTCCACCGAAAACAGCAACTTCTTCGAAGGGCAAACACTACAAAGGCATCCCAACAAAACATCCATATAAGAAAGTTCGCAGGTCTGTTCCAGTTCCTAATGAAGGTCAACACAGTGTAGTCCATGCTCACATGTAGGACACTCTTCTAACCTAGTATCTCTTGTTACTGTAAAAAGGAAGCTCATGAGTTGTCTCCACCACCCATATTCCGTCCCTCTGCGTCCTCCTCTGTGCCGAAACCTAGGGTTTTTGTTGAGATAGTGGTATTAGACTCTGATTCCTCTGACAGTGAAGACAATGTGGTGTTATCAACCCTTCTCCATCGAAAGGCAGGGTCTCGTCCTGGTTTGTCCCCATCCTCTTTCACAATCAAGATAGGTTTCGCATTCTCTACCAAGAGAAAAGAGGTTCTGTCTCGGACTACTGACCATGGTAACTCTTCCACTGATTCGTCATCACCTCATGCTTTCTCACAAGCTTATCTTCTAACTGATGAAGACGATGCAAGTGACGAAACTGACGATGATTATATACCTAGAACTGAAGAAACGACTGTACCCGAGGACTCGTCCACATCTATTGAGGATCCTAGTGCATACCTTGATACTCGTATGTTGGAACCTAGGTCAACCGAAGGCTCGAGTGAATTCTCCATTCCGATGTTACCACCTGGGCATGTCGGTTCCTCCTTTGGCCCGTGTCGTCCCTCTATCTAA

mRNA sequence

ATGGCTCCCTTTCCACCGAAAACAGCAACTTCTTCGAAGGGCAAACACTACAAAGGCATCCCAACAAAACATCCATATAAGAAAGTTCGCAGGTCTGTTCCAGTTCCTAATGAAGGTCAACACAGTGAAGCTCATGAGTTGTCTCCACCACCCATATTCCGTCCCTCTGCGTCCTCCTCTGTGCCGAAACCTAGGGTTTTTGTTGAGATAGTGGTATTAGACTCTGATTCCTCTGACAGTGAAGACAATGTGGTGTTATCAACCCTTCTCCATCGAAAGGCAGGGTCTCGTCCTGGTTTGTCCCCATCCTCTTTCACAATCAAGATAGGTTTCGCATTCTCTACCAAGAGAAAAGAGGTTCTGTCTCGGACTACTGACCATGGTAACTCTTCCACTGATTCGTCATCACCTCATGCTTTCTCACAAGCTTATCTTCTAACTGATGAAGACGATGCAAGTGACGAAACTGACGATGATTATATACCTAGAACTGAAGAAACGACTGTACCCGAGGACTCGTCCACATCTATTGAGGATCCTAGTGCATACCTTGATACTCGTATGTTGGAACCTAGGTCAACCGAAGGCTCGAGTGAATTCTCCATTCCGATGTTACCACCTGGGCATGTCGGTTCCTCCTTTGGCCCGTGTCGTCCCTCTATCTAA

Coding sequence (CDS)

ATGGCTCCCTTTCCACCGAAAACAGCAACTTCTTCGAAGGGCAAACACTACAAAGGCATCCCAACAAAACATCCATATAAGAAAGTTCGCAGGTCTGTTCCAGTTCCTAATGAAGGTCAACACAGTGAAGCTCATGAGTTGTCTCCACCACCCATATTCCGTCCCTCTGCGTCCTCCTCTGTGCCGAAACCTAGGGTTTTTGTTGAGATAGTGGTATTAGACTCTGATTCCTCTGACAGTGAAGACAATGTGGTGTTATCAACCCTTCTCCATCGAAAGGCAGGGTCTCGTCCTGGTTTGTCCCCATCCTCTTTCACAATCAAGATAGGTTTCGCATTCTCTACCAAGAGAAAAGAGGTTCTGTCTCGGACTACTGACCATGGTAACTCTTCCACTGATTCGTCATCACCTCATGCTTTCTCACAAGCTTATCTTCTAACTGATGAAGACGATGCAAGTGACGAAACTGACGATGATTATATACCTAGAACTGAAGAAACGACTGTACCCGAGGACTCGTCCACATCTATTGAGGATCCTAGTGCATACCTTGATACTCGTATGTTGGAACCTAGGTCAACCGAAGGCTCGAGTGAATTCTCCATTCCGATGTTACCACCTGGGCATGTCGGTTCCTCCTTTGGCCCGTGTCGTCCCTCTATCTAA

Protein sequence

MAPFPPKTATSSKGKHYKGIPTKHPYKKVRRSVPVPNEGQHSEAHELSPPPIFRPSASSSVPKPRVFVEIVVLDSDSSDSEDNVVLSTLLHRKAGSRPGLSPSSFTIKIGFAFSTKRKEVLSRTTDHGNSSTDSSSPHAFSQAYLLTDEDDASDETDDDYIPRTEETTVPEDSSTSIEDPSAYLDTRMLEPRSTEGSSEFSIPMLPPGHVGSSFGPCRPSI*
BLAST of MELO3C013559 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 2.9e-50
Identity = 126/246 (51.22%), Postives = 140/246 (56.91%), Query Frame = 1

Query: 1   MAPFPPKTATSSKGKHYKGIPTKHPYKKVRRSVPVPNEGQH------------------- 60
           MA  PPKT TSSKGK YKGIPTKHPYKK+ RSVP   EGQH                   
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  ------SEAHELSPPPIFRPSASSSVPKPRVFVEIVVLDSDSSDSEDNVVLSTLLHRKAG 120
                  E  E SPP     S SSSVP+PRV +E VVLDSDSSDS+DNVVLSTLLHRK+ 
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKSS 281

Query: 121 SRPGLSPSSFTIKIGFAFSTKRKEVLSRTTDHGNSSTDSSSPHAFSQAYLLTDEDDASDE 180
           + P  SP +F                       +  T+                  ASDE
Sbjct: 282 AAPS-SPHAF--------------------PQASLPTNEDD---------------ASDE 341

Query: 181 TDDDYIPRTEETTVPEDSSTSIEDPSAYLDTRMLEPRSTEGSSEFSIPMLPPGHVGSSFG 222
           TD+DY+P TEETTV EDSSTS EDPSA  D R LEPRSTEGSSEFSIPM PPG+V SS+ 
Sbjct: 342 TDEDYVPGTEETTVLEDSSTSTEDPSASHDARTLEPRSTEGSSEFSIPMSPPGNVDSSYS 371

BLAST of MELO3C013559 vs. NCBI nr
Match: gi|659126154|ref|XP_008463038.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 9.4e-33
Identity = 107/254 (42.13%), Postives = 128/254 (50.39%), Query Frame = 1

Query: 7   KTATSSKGKHYKGIPTKHPYKKVRRSVP------VPNEGQHSEAHELSPPPI-------- 66
           K+ T SKGK YKGIPTKH YKKVR+S+P      VP+    S A  L  PP         
Sbjct: 7   KSTTFSKGKRYKGIPTKHLYKKVRKSIPSGENSAVPSPEHSSNAERLENPPSPVTVKEEV 66

Query: 67  --------FRPSASSSVPK------PRVFVEIVVLDSDSSDSEDNVVLSTLLHRKAGSRP 126
                     PS S S+PK      PRV VE V+LDSDSS+SEDN+VLSTLLHR    R 
Sbjct: 67  LEFSSPQSALPSVSLSIPKSSSRPEPRVSVETVILDSDSSNSEDNIVLSTLLHRTRSVRS 126

Query: 127 GLSPSSFTIKIGFAFSTK-RKEVLSRTTDHGNSSTDSSSPHAFSQAYLLTDEDDASDETD 186
             + S    +     S K      S+ T +  + +  +SP     +    D+DD  D+  
Sbjct: 127 NQTASPAKPQASGGVSPKVASPRSSKHTKYSGAPSSQASPRTTPPSVADDDDDDFDDK-- 186

Query: 187 DDYIPRTEETTVPEDSSTSIE--------DPSAYLDTRM----LEPRSTEGSSEFSIPML 220
            DY P T+E T  E +STS E        DPS +  T      L PRSTEG SEFS PM 
Sbjct: 187 -DYAPGTKEKTEAEATSTSTENQSASQEKDPSDHRSTEQPGESLIPRSTEGPSEFSTPMS 246

BLAST of MELO3C013559 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 109/254 (42.91%), Postives = 126/254 (49.61%), Query Frame = 1

Query: 1   MAPFPPKTATSSKGKHYKGIPTKHPYKKVRRS--------VPVPNEGQH----------- 60
           M P   K+ TSSKGK YKGI TKHPYKKVR+S        VP P    H           
Sbjct: 28  MDPTASKSTTSSKGKRYKGISTKHPYKKVRKSISSGEYSTVPSPAHSSHVERSANPPSPV 87

Query: 61  ---SEAHELSPPPIFRPSASSSV------PKPRVFVEIVVLDSDSSDSEDNVVLSTLLHR 120
               E  E S P   RPS SSSV      P+PRV VE VVLD +SSDS+DNV+LSTLLHR
Sbjct: 88  TVKEEVLEFSSPQSARPSVSSSVSKLPSRPEPRVSVETVVLDFNSSDSDDNVILSTLLHR 147

Query: 121 KAGSRPGLSPSSFTIKIGFAFSTK-RKEVLSRTTDHGNSSTDSSSPHAFSQAYLLTDEDD 180
              +R   + S    +     S K      S  T +  + +  +SP          DEDD
Sbjct: 148 TRSTRSNQTTSLIKPQASGGVSPKVAPPRPSEHTKYSGTPSSQASPKTVPPGE-ADDEDD 207

Query: 181 ASDETDDDYIPRTEETTVPEDSSTSIEDPSAY-----LDTRMLE-------PRSTEGSSE 214
            SD  D+DY P TEE T  E +STS E+ SA       D R  E       PRSTEG SE
Sbjct: 208 DSD--DEDYAPGTEEKTKAETTSTSTENQSASPKKDPSDHRSTEESGESSIPRSTEGPSE 267

BLAST of MELO3C013559 vs. NCBI nr
Match: gi|659118726|ref|XP_008459271.1| (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 103/247 (41.70%), Postives = 117/247 (47.37%), Query Frame = 1

Query: 1   MAPFPPKTATSSKGKHYKGIPTKHPYKKVRRSV-----PVPNEGQHS------------- 60
           M P  PK  TSSKGK YKGIPTKHPYKKVR+S+        +   HS             
Sbjct: 28  MDPTAPKLITSSKGKRYKGIPTKHPYKKVRKSILSGEYSTVSSPAHSSYAERSANPPSPV 87

Query: 61  ----EAHELSPPPIFRPSASSSVPK------PRVFVEIVVLDSDSSDSEDNVVLSTLLHR 120
               E  E S P    PS SSSVPK      PRV VE VVLDSDSSDS+DNV+LSTLLHR
Sbjct: 88  TVKEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDSDSSDSDDNVILSTLLHR 147

Query: 121 KAGSRPGLSPSSFTIKIGFAFSTKRKEVLSRTTDHGNSSTDSSSPHAFSQAYLLTD---E 180
              +R                               N +T  + P AF +     +   E
Sbjct: 148 TRSAR------------------------------NNQTTSPAKPQAFPKTAPPGEVDVE 207

Query: 181 DDASDETDDDYIPRTEETTVPEDSSTSIEDPSAY-----LDTRMLE-------PRSTEGS 205
           DD SD  D+DY   TEE T  E +STS E+ SA       D R  E       PRSTEG 
Sbjct: 208 DDDSD--DEDYALGTEEKTEAETTSTSTENHSASPEKDPSDHRSTEEPGESSIPRSTEGP 242

BLAST of MELO3C013559 vs. NCBI nr
Match: gi|659072220|ref|XP_008464058.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 81/180 (45.00%), Postives = 97/180 (53.89%), Query Frame = 1

Query: 1   MAPFPPKTATSSKGKHYKGIPTKHPYKKVRRSVPVPNEGQHSEAHELSPPPIFRPSASSS 60
           +AP PPK+AT+SKGK YKGIPTKHPYKKVRRSV    EG HS        P+  P  SS 
Sbjct: 70  IAPSPPKSATTSKGKRYKGIPTKHPYKKVRRSVTATAEGLHS--------PLTSPVRSSH 129

Query: 61  VPKPRVFVEIVVLDSDSSD--SEDNVVLSTLLHRKAGSRPGLSPSSFTIKIGFAFSTKRK 120
             +P   V  V +  +  +    +NV  + L  R   S P    S              K
Sbjct: 130 AGRPSDPVSPVTVKKEVPEVGHHNNVSSTPLQPRPTSSSPPRDTS------------LSK 189

Query: 121 EVLSRTTDHGNSSTDSSSPHAFSQAYLLTDEDDASDETDDDYIPRTEETTVPEDSSTSIE 179
           E   +TTD   SST SSSP       L TD DDASDETD+DY+  T+ETTV E++STS E
Sbjct: 190 EGPPQTTDQSKSSTASSSP----SGSLPTDVDDASDETDEDYVLGTKETTVLEETSTSSE 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659082052|ref|XP_008441642.1|2.9e-5051.22PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659126154|ref|XP_008463038.1|9.4e-3342.13PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659114605|ref|XP_008457140.1|4.0e-3142.91PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo][more]
gi|659118726|ref|XP_008459271.1|2.0e-2741.70PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo][more]
gi|659072220|ref|XP_008464058.1|1.0e-2345.00PREDICTED: putative protein TPRXL [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013559T1MELO3C013559T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None