MELO3C013556 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013556
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr11 : 16647633 .. 16648190 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAGTAGACGAAGAACTACAGGTGATATGAGTTGGGACAAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTTGTGATGCAAAACGTAATGAGTTCTTAAGGCTCGCTCAAGGGTCAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGTTACTAGGGTGATTGAGGATGAAGTGGAAAGATGTAAGAGATTCAGAGAGGGGTTACGAGAGGAAATTCGTACTCCTATGACAGTTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTGGAGGCAGCACTAAGGGTAGAAAAATGTTTAAATGAAAGGAAGCGGGAAAGAGAAACTTTCAAGAATGTACGTATATTCAGCTCGTCAATGCATCGAAATCAACCAGGTAAAGAAAGAAGTGGAAGATTTATGCCCGGGGTGTTTAGGAGAGGGAATTTTAAGTCTCAGTATAGTTGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATTCTATATCTTCTACATGA

mRNA sequence

ATGGAAGAAAGTAGACGAAGAACTACAGGTGATATGAGTTGGGACAAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTTGTGATGCAAAACGTAATGAGTTCTTAAGGCTCGCTCAAGGGTCAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGTTACTAGGGTGATTGAGGATGAAGTGGAAAGATGTAAGAGATTCAGAGAGGGGTTACGAGAGGAAATTCGTACTCCTATGACAGTTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTGGAGGCAGCACTAAGGGTAGAAAAATGTTTAAATGAAAGGAAGCGGGAAAGAGAAACTTTCAAGAATGTACGTATATTCAGCTCGTCAATGCATCGAAATCAACCAGGTAAAGAAAGAAGTGGAAGATTTATGCCCGGGGTGTTTAGGAGAGGGAATTTTAAGTCTCAGTATAGTTGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATTCTATATCTTCTACATGA

Coding sequence (CDS)

ATGGAAGAAAGTAGACGAAGAACTACAGGTGATATGAGTTGGGACAAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTTGTGATGCAAAACGTAATGAGTTCTTAAGGCTCGCTCAAGGGTCAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGTTACTAGGGTGATTGAGGATGAAGTGGAAAGATGTAAGAGATTCAGAGAGGGGTTACGAGAGGAAATTCGTACTCCTATGACAGTTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTGGAGGCAGCACTAAGGGTAGAAAAATGTTTAAATGAAAGGAAGCGGGAAAGAGAAACTTTCAAGAATGTACGTATATTCAGCTCGTCAATGCATCGAAATCAACCAGGTAAAGAAAGAAGTGGAAGATTTATGCCCGGGGTGTTTAGGAGAGGGAATTTTAAGTCTCAGTATAGTTGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAGGAGCCCAGAGATCGAGTGGTTCTAGTCATTCTATATCTTCTACATGA

Protein sequence

MEESRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERKRERETFKNVRIFSSSMHRNQPGKERSGRFMPGVFRRGNFKSQYSCSSFSKSGSGGGAQRSSGSSHSISST*
Homology
[Close]
BLAST of MELO3C013556 vs. TrEMBL
Match: A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 46  MTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAAL 105
           MT+AEYEKKY +L ++ T VIEDE + CKR  EGLREEIRT +T CA W DFSKLVEAA+
Sbjct: 1   MTIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVTPCAKWIDFSKLVEAAI 60

Query: 106 RVEKCLNERKRERETFKNV 125
           RV+  ++ERK E E  KNV
Sbjct: 61  RVQINVHERKLESEALKNV 79

[Close]
BLAST of MELO3C013556 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16
Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 1 

Query: 12  MSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYVTRVIEDEVE 71
           ++W++F++ F D FYP S+  AK++EFL L QGSM+V EYE K+ ELS++   ++  E +
Sbjct: 144 INWEEFQRVFSDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNELSRFAPELVATEED 203

Query: 72  RCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCL--NERKRERETFKNVRIFSS 131
           RC+RF EGL  EI+  +T    + +   L +AA RV + L  N  +R R+T        S
Sbjct: 204 RCRRFEEGLWWEIQAVVT-ANTYPNMRALAQAAARVSRKLGGNVSRRRRDT--------S 263

Query: 132 SMHRNQPGKERSGRFMPGVFRRGNFKSQYSCSSFSKSGSGGGAQRSSGSSHSISS 185
            +     G  + G         G    + S SS  +SGS     + SG   + S+
Sbjct: 264 GIGGPSQGPSKRGGSSSSSASGGWSGGRGSSSSSGRSGSRSAWTQYSGPQSAAST 309

[Close]
BLAST of MELO3C013556 vs. TrEMBL
Match: Q7XX57_ORYSJ (OSJNBb0049I21.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0049I21.6 PE=4 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-16
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 1 

Query: 2   EESRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKY 61
           +E+R    G+ +W++F  AF D F P +    K+NEF RL QG+ TV EY  ++T+L++Y
Sbjct: 84  KEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTVQEYLNRFTQLARY 143

Query: 62  VTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERK 116
            TR + DE E+  +F EGL +E+R PM +  D + F  L+   +R+E   N+RK
Sbjct: 144 ATRDLADEEEKIDKFIEGLNDELREPM-IGQDHDSFQSLINKVVRLE---NDRK 193

[Close]
BLAST of MELO3C013556 vs. TrEMBL
Match: Q2QRQ2_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g26790 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 1 

Query: 2   EESRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKY 61
           +E+R    G+ +W++F  AF D F P +    K+NEF RL QG+ TV EY  ++T+L++Y
Sbjct: 109 KEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTVQEYLNRFTQLARY 168

Query: 62  VTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERK 116
            TR + DE E+  +F EGL +E+R PM +  D + F  L+   +R+E   N+RK
Sbjct: 169 ATRDLADEEEKIDKFIEGLNDELRGPM-IGQDHDSFQSLINKVVRLE---NDRK 218

[Close]
BLAST of MELO3C013556 vs. TrEMBL
Match: Q7XEF2_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g28930 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 1 

Query: 2   EESRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKY 61
           +E+R    G+ +W++F  AF D F P +    K+NEF RL QG+ TV EY  ++T+L++Y
Sbjct: 109 KEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTVQEYLNRFTQLARY 168

Query: 62  VTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERK 116
            TR + DE E+  +F EGL +E+R PM +  D + F  L+   +R+E   N+RK
Sbjct: 169 ATRDLADEEEKIDKFIEGLNDELRGPM-IGQDHDSFQSLINKVVRLE---NDRK 218

[Close]
BLAST of MELO3C013556 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 95/180 (52.78%), Postives = 130/180 (72.22%), Query Frame = 1 

Query: 3   ESRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYV 62
           ESR   T ++SW++FKKAF++K+YPRS+ DAKR+EF RL  GSMT+AEYEKKY +LSKY 
Sbjct: 132 ESRYHDTNEISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYA 191

Query: 63  TRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERKRERETFK 122
           T +IEDE++RCKRF +GLREEIRTP+T  ++W +FSKLVE A+RVEK L ERK E+E  +
Sbjct: 192 TSMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAVRVEKSLAERKNEKEVSR 251

Query: 123 NV-RIFSSSMHRNQPGKERSGRFMPGVFRRGNFKSQYSCSSFSKSGSGGGAQRSSGSSHS 182
           NV    +  + R++  ++ + RF+ GV  RGNFKS+   S      +   +Q SS S+ +
Sbjct: 252 NVSTAITQGVSRDKSNRQGNRRFVQGVASRGNFKSRRRGSFDYGPNTSATSQVSSSSNRT 311

[Close]
BLAST of MELO3C013556 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 90/140 (64.29%), Postives = 99/140 (70.71%), Query Frame = 1 

Query: 46  MTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAAL 105
           M VAEYEKKYT+LSKY T VIEDE+ERCK+F EGLREEIRT +T CADW DFSK +EAAL
Sbjct: 1   MIVAEYEKKYTKLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAAL 60

Query: 106 RVEKCLNERKRERETFKNVRIFSSSMHRNQPGKERSGRFMPGVFRRGNFKSQYSCSSFSK 165
           RVEK + ERKRERE  KNV     +++  Q  K            RGN KSQYS SSFSK
Sbjct: 61  RVEKSVYERKREREASKNV----CTVYIKQSSK----------LLRGNLKSQYSGSSFSK 120

Query: 166 SGSGGGAQRSSGSSHSISST 186
           SGSGGG QR S SSH I  T
Sbjct: 121 SGSGGGTQRPSCSSHPIYPT 126

[Close]
BLAST of MELO3C013556 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 76/178 (42.70%), Postives = 102/178 (57.30%), Query Frame = 1 

Query: 4   SRRRTTGDMSWDKFKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYVT 63
           +RR     + W  F+  F +K+YP ++C+AKR+EFL L QGS+++AEYE+KYTELS+Y  
Sbjct: 29  ARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMAEYERKYTELSRYAG 88

Query: 64  RVIEDEVERCKRFREGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERKRERETFKN 123
            ++  E +RC RF  GLR EIRTP+T  A W +FS+LVE ALRVE+ + E K   E  + 
Sbjct: 89  MIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG 148

Query: 124 VRIFSSSMHRNQPGKERSGRFMPGVFRRGNFKSQYSCSSFS-KSGSGGGAQRSSGSSH 181
           V   S      Q       RF  GV   G       C  F  +SG     Q SSGS++
Sbjct: 149 VSTTSGIRGPEQ------RRFTSGVNVSG-------CQDFKRRSGGKPFRQMSSGSAY 193

[Close]
BLAST of MELO3C013556 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 72/162 (44.44%), Postives = 95/162 (58.64%), Query Frame = 1 

Query: 17  FKKAFFDKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYVTRVIEDEVERCKRF 76
           F+  F +K+YP ++C+AKR+EFL L QGS+ V EYE KYTELS+Y   ++  E +RC+RF
Sbjct: 47  FRGIFEEKYYPTTYCEAKRDEFLELKQGSLLVVEYEMKYTELSRYAEMIVASESDRCRRF 106

Query: 77  REGLREEIRTPMTVCADWNDFSKLVEAALRVEKCLNERKRERETFKNVRIFSSSMHRNQP 136
             GLR E+RTP+T  A W +FS+LVE ALRVE+ + E K   E  + V   S    R Q 
Sbjct: 107 ERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRGVSTTSGIRGREQ- 166

Query: 137 GKERSGRFMPGVFRRG--NFKSQYSCSSFSKSGSGGGAQRSS 177
                 RF PGV   G  +FK +       +  SG   QR S
Sbjct: 167 -----RRFTPGVNVSGCQDFKRRSGGKPLRQMSSGTAYQRQS 202

[Close]
BLAST of MELO3C013556 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 7.1e-26
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1 

Query: 23  DKFYPRSFCDAKRNEFLRLAQGSMTVAEYEKKYTELSKYVTRVIEDEVERCKRFREGLRE 82
           +K+YP ++C+AKR+EFL L QGS +VAEYE+KYTELS+Y   ++  E + C+RF  GLR 
Sbjct: 73  EKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFERGLRF 132

Query: 83  EIRTPMTVCADWNDFSKLVEAALRVEKCLNERKRERETFKNVRIFSSSMHRNQPGKERSG 142
           EIRT +T  A W +FS+LVE ALRVE+ + E K   E  + V   S    R Q       
Sbjct: 133 EIRTLVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRGVSTTSGIRGREQ------R 192

Query: 143 RFMPGVFRRGNFKSQYSCSSFS-KSGSGGGAQRSSGSSH 181
           RF PGV   G       C  F  +SG     Q SSGS++
Sbjct: 193 RFTPGVNVSG-------CQDFKRRSGGKPLRQMSSGSAY 218

The following BLAST results are available for this feature:
BLAST of MELO3C013556 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI9_CUCSA3.5e-1964.56Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1[more]
M5XSR7_PRUPE3.6e-1634.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
Q7XX57_ORYSJ8.0e-1640.35OSJNBb0049I21.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0049I21.6 PE=4 ... [more]
Q2QRQ2_ORYSJ1.0e-1540.35Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap... [more]
Q7XEF2_ORYSJ1.0e-1540.35Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap... [more]
BLAST of MELO3C013556 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|1.1e-4552.78PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|778697787|ref|XP_011654404.1|2.0e-3664.29PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
gi|659118041|ref|XP_008458920.1|2.0e-2842.70PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
gi|659133542|ref|XP_008466780.1|1.7e-2744.44PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
gi|659112465|ref|XP_008456237.1|7.1e-2645.28PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013556T1MELO3C013556T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 6..82
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013556Cucurbita pepo (Zucchini)cpemeB266
MELO3C013556Cucurbita pepo (Zucchini)cpemeB677
MELO3C013556Bottle gourd (USVL1VR-Ls)lsimeB051
MELO3C013556Bottle gourd (USVL1VR-Ls)lsimeB058
MELO3C013556Cucumber (Gy14) v2cgybmeB367
MELO3C013556Cucumber (Gy14) v2cgybmeB388
MELO3C013556Silver-seed gourdcarmeB0032
MELO3C013556Silver-seed gourdcarmeB0342
MELO3C013556Cucumber (Chinese Long) v3cucmeB431
MELO3C013556Cucumber (Chinese Long) v3cucmeB453
MELO3C013556Wax gourdmewgoB120
MELO3C013556Wax gourdmewgoB126
MELO3C013556Cucumber (Gy14) v1cgymeB178
MELO3C013556Cucumber (Gy14) v1cgymeB179
MELO3C013556Cucurbita maxima (Rimu)cmameB543
MELO3C013556Cucurbita moschata (Rifu)cmomeB490
MELO3C013556Cucurbita moschata (Rifu)cmomeB532
MELO3C013556Wild cucumber (PI 183967)cpimeB419
MELO3C013556Wild cucumber (PI 183967)cpimeB442
MELO3C013556Cucumber (Chinese Long) v2cumeB425
MELO3C013556Cucumber (Chinese Long) v2cumeB451