MELO3C013555 (gene) Melon (DHL92) v3.5.1

NameMELO3C013555
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAuxin-responsive GH3 family protein
Locationchr11 : 16641505 .. 16641891 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAAAACGACTCTTGTCTGGAGTCCGACACCTCGTAGTATTTTCTGATAAAAATCAACCAAGAGAAGATGGACTTAGTTTCCTTGTGGAGAAGCCATGGGCTGGCTCTTTTGCAGATCATTGGCCACGTTTATACAACAACTCAATTCTTCATAGATTGTCTGTAGAGTTATCTTTATCCGAGGGAAAAACTTCATTGGTCCTACAGTCTTCTATCCACAACGAGGCTCCTAATTTTGACAGAGCTCTCACTCTTGAGCAACGTTTAATTGAAAGCCAAACATATTGGGCTGCTATGACCAAGGTCCCTGAAGAGTTCTACTTTACTGACTGCTATTGGGAGTGGTTAGAGCTTGTAGTTGGTCGAAATGCATGA

mRNA sequence

ATGGTTTACTTCACAAAACGACTCTTGTCTGGAGTCCGACACCTCGTAGTATTTTCTGATAAAAATCAACCAAGAGAAGATGGACTTAGTTTCCTTGTGGAGAAGCCATGGGCTGGCTCTTTTGCAGATCATTGGCCACGTTTATACAACAACTCAATTCTTCATAGATTGTCTGTAGAGTTATCTTTATCCGAGGGAAAAACTTCATTGGTCCTACAGTCTTCTATCCACAACGAGGCTCCTAATTTTGACAGAGCTCTCACTCTTGAGCAACGTTTAATTGAAAGCCAAACATATTGGGCTGCTATGACCAAGGTCCCTGAAGAGTTCTACTTTACTGACTGCTATTGGGAGTGGTTAGAGCTTGTAGTTGGTCGAAATGCATGA

Coding sequence (CDS)

ATGGTTTACTTCACAAAACGACTCTTGTCTGGAGTCCGACACCTCGTAGTATTTTCTGATAAAAATCAACCAAGAGAAGATGGACTTAGTTTCCTTGTGGAGAAGCCATGGGCTGGCTCTTTTGCAGATCATTGGCCACGTTTATACAACAACTCAATTCTTCATAGATTGTCTGTAGAGTTATCTTTATCCGAGGGAAAAACTTCATTGGTCCTACAGTCTTCTATCCACAACGAGGCTCCTAATTTTGACAGAGCTCTCACTCTTGAGCAACGTTTAATTGAAAGCCAAACATATTGGGCTGCTATGACCAAGGTCCCTGAAGAGTTCTACTTTACTGACTGCTATTGGGAGTGGTTAGAGCTTGTAGTTGGTCGAAATGCATGA

Protein sequence

MVYFTKRLLSGVRHLVVFSDKNQPREDGLSFLVEKPWAGSFADHWPRLYNNSILHRLSVELSLSEGKTSLVLQSSIHNEAPNFDRALTLEQRLIESQTYWAAMTKVPEEFYFTDCYWEWLELVVGRNA*
BLAST of MELO3C013555 vs. NCBI nr
Match: gi|659082744|ref|XP_008442010.1| (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50
Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 1   MVYFTKRLLSGVRHLVVFSDKNQPREDGLSFLVEKPWAGSFADHWPRLYNNSILHRLSVE 60
           M+YFT+R L GVRHLVVF D+NQ REDGLS LVEKPW GSFADHWPRL N+SIL RLSVE
Sbjct: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67

Query: 61  LSLSEGKTSLVLQSSIHNEAPNFDRALTLEQRLIESQTYWAAMTKVPEEFYFTDCYWEWL 120
           + L EGKT+ VLQSSIHNE PN DR LTL Q LIE QT W  MTKVP EF FTDCYWEWL
Sbjct: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127

Query: 121 ELVVGRNA 129
           ELVVGRNA
Sbjct: 128 ELVVGRNA 135

BLAST of MELO3C013555 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-11
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 1

Query: 1   MVYFTK-RLLSGVRHLVVFSDKNQPREDGLSFLVEKPWAGSFADHWPRLYNNSILHRLSV 60
           MVYF   R   GV  LVV  D+ QP + G + +V  P  G +   WPRL +   ++  + 
Sbjct: 4   MVYFKDTRSPLGVEQLVVLDDERQPLDKGTTLVVHTPLIGKYPMQWPRLTSTYNINEWTH 63

Query: 61  ELSLSEGKTSLVLQSSIHNEAPNFDRALTLEQRLIESQTYWAAMTKVPEEFYFTDCYWEW 120
           E+SLS+      LQ+S H  +       TL   +I+ +  W    +   EF++T  YWEW
Sbjct: 64  EVSLSKTLKVWTLQTSHHKYSDEIVHLPTLGHNIIKGKAMWGESLQFTGEFHYTPGYWEW 123

Query: 121 LELVVGR 127
            E V+ R
Sbjct: 124 TEDVLSR 130

BLAST of MELO3C013555 vs. NCBI nr
Match: gi|659098612|ref|XP_008450227.1| (PREDICTED: uncharacterized protein LOC103491890 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1

Query: 65  EGKTSLVLQSSIHNEAPNFDRALTLEQRLIESQTYWAAMTKVPEEFYFTDCYWEWLELVV 124
           EGK ++ +++   N      +ALTL QRLIE Q  W  +TKVP EF F+DCYWEWLELVV
Sbjct: 188 EGKGTMGIETHHGNRILTNVQALTLGQRLIECQIRWGTVTKVPREFCFSDCYWEWLELVV 247

Query: 125 GRN 128
           GRN
Sbjct: 248 GRN 250

BLAST of MELO3C013555 vs. NCBI nr
Match: gi|848857215|ref|XP_012828660.1| (PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata])

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 41/127 (32.28%), Postives = 61/127 (48.03%), Query Frame = 1

Query: 1   MVYFTK-RLLSGVRHLVVFSDKNQPREDGLSFLVEKPWAGSFADHWPRLYNNSILHRLSV 60
           M YF   R   GV  LVV  D+ QP + G + +V     G +   WPRL +   ++  + 
Sbjct: 1   MAYFKDTRSPLGVEQLVVLDDERQPLDKGTTMVVHTSLIGRYPMQWPRLTSTYNINEWTH 60

Query: 61  ELSLSEGKTSLVLQSSIHNEAPNFDRALTLEQRLIESQTYWAAMTKVPEEFYFTDCYWEW 120
           E+SLS+      LQ+S H  +       TL   +I+ +  W    +   EF++T  YWEW
Sbjct: 61  EVSLSKTLKVWTLQTSHHKYSDEIVHLPTLGNNIIKGKAMWGESLQFTGEFHYTAGYWEW 120

Query: 121 LELVVGR 127
            E V+ R
Sbjct: 121 TEDVLSR 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659082744|ref|XP_008442010.1|2.9e-5078.13PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo][more]
gi|848853669|ref|XP_012844633.1|5.9e-1133.86PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata][more]
gi|659098612|ref|XP_008450227.1|5.9e-1157.14PREDICTED: uncharacterized protein LOC103491890 [Cucumis melo][more]
gi|848857215|ref|XP_012828660.1|2.5e-0932.28PREDICTED: uncharacterized protein LOC105949899 [Erythranthe guttata][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013555T1MELO3C013555T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None