MELO3C013538 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013538
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Wound-responsive family protein
Location	chr11 : 16073001 .. 16073273 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTATCTCGGTCTCGGTCGTCGGATGTGGATGACGGCGAGTGTAGCGGTAGTACAGGGCGGGCAATCGGACGGAGGCCACCACGAGGCGACGAAAGGAGTAGTTTCTCTGCCCCAAAAACTTAGGGTTTCGTCTGCGGAAACAACCGCCGTAAATCTGCGGCCAATTTCAAGTGCGTGGAATCAGGAGGGAGAGGACATCAAGAGGGAAGCGAATGGTGAAGAGTCTCTTCGACGAGTAATGTACTTGAACTGCTGGGGGCAGGGGTGA

mRNA sequence

ATGAGCTATCTCGGTCTCGGTCGTCGGATGTGGATGACGGCGAGTGTAGCGGTAGTACAGGGCGGGCAATCGGACGGAGGCCACCACGAGGCGACGAAAGGAGTAGTTTCTCTGCCCCAAAAACTTAGGGTTTCGTCTGCGGAAACAACCGCCGTAAATCTGCGGCCAATTTCAAGTGCGTGGAATCAGGAGGGAGAGGACATCAAGAGGGAAGCGAATGGTGAAGAGTCTCTTCGACGAGTAATGTACTTGAACTGCTGGGGGCAGGGGTGA

Coding sequence (CDS)

ATGAGCTATCTCGGTCTCGGTCGTCGGATGTGGATGACGGCGAGTGTAGCGGTAGTACAGGGCGGGCAATCGGACGGAGGCCACCACGAGGCGACGAAAGGAGTAGTTTCTCTGCCCCAAAAACTTAGGGTTTCGTCTGCGGAAACAACCGCCGTAAATCTGCGGCCAATTTCAAGTGCGTGGAATCAGGAGGGAGAGGACATCAAGAGGGAAGCGAATGGTGAAGAGTCTCTTCGACGAGTAATGTACTTGAACTGCTGGGGGCAGGGGTGA

Protein sequence

MSYLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSAWNQEGEDIKREANGEESLRRVMYLNCWGQG*

Homology

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BLAST of MELO3C013538 vs. TrEMBL
Match: A0A0A0KAY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G123980 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 68/92 (73.91%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1  MSYL--GLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPIS 60
          MSYL  GLGRRMWMTASVAVVQGGQSDGGHHEATKGV+SLPQKLRV S            
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLS------------ 60

Query: 61 SAWNQEGEDIKREANGEESLRRVMYLNCWGQG 91
                GE IKREA+GEESLRRVMYLNCWGQG
Sbjct: 61 ------GEKIKREADGEESLRRVMYLNCWGQG 74

[Close]

BLAST of MELO3C013538 vs. TrEMBL
Match: A0A0A0K6Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60
          MSYL    R+ M ASVAV QG    G  H+   G+ SL Q  R+ S+   + +LRP+SS 
Sbjct: 1  MSYLN---RVGMAASVAVAQGHTEIG--HKWKSGLKSLRQGRRLLSSGENSADLRPLSSL 60

Query: 61 WNQEGE------DI-KREANGEESLRRVMYLNCWGQG 91
             EG       D+ +R A  E+SLRRVMYLNCWGQG
Sbjct: 61 VGSEGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of MELO3C013538 vs. TrEMBL
Match: A0A0D2QYX1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G017000 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-07
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQG-GQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISS 60
          MSYL    R+WM  S+A+VQG G++ G + ++    +   Q+ R+S  E++  NLRPIS 
Sbjct: 1  MSYLN---RVWMATSMAMVQGHGENQGQNWKSGIKFLQRGQR-RLSDGESS--NLRPISG 60

Query: 61 AWNQEGEDIKREANGEESLRRVMYLNCWGQG 91
          + +  G    R+   +ES+RRVMYLNCWGQG
Sbjct: 61 S-DLTGVVGIRDGQADESIRRVMYLNCWGQG 84

[Close]

BLAST of MELO3C013538 vs. TrEMBL
Match: A0A061E4N2_THECC (Wound-responsive family protein, putative OS=Theobroma cacao GN=TCM_007940 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQG-GQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISS 60
          MSYL    R+WM  S+AVVQG G++ G   +  K  V   Q+ +       + +LRP+S 
Sbjct: 1  MSYLN---RVWMATSMAVVQGHGENQG---QKWKAGVKFLQRGQGRLFGGDSSDLRPVSG 60

Query: 61 AWNQE--GEDIKREANGEESLRRVMYLNCWGQG 91
              +  G    R+A  +ES+RRVMYLNCWGQG
Sbjct: 61 MIGSDFPGMVGNRDAQADESIRRVMYLNCWGQG 87

[Close]

BLAST of MELO3C013538 vs. TAIR10
Match: AT4G28240.1 (AT4G28240.1 Wound-responsive family protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60
          MSYL    ++WM AS   VQG    G   +   G+ S  +  R  S++     LRP+++A
Sbjct: 1  MSYLN---KVWMAASFVAVQGNADHGV--KLKSGLTSAHRLQRRLSSD-----LRPLAAA 60

Query: 61 WNQEGEDIKRE-------ANGEESLRRVMYLNCWGQG 91
           +  G+ +  E       +  +ESLR+VMYLNCW QG
Sbjct: 61 -DLTGDSLPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

[Close]

BLAST of MELO3C013538 vs. NCBI nr
Match: gi|700191479|gb|KGN46683.1| (hypothetical protein Csa_6G123980 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 68/92 (73.91%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1  MSYL--GLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPIS 60
          MSYL  GLGRRMWMTASVAVVQGGQSDGGHHEATKGV+SLPQKLRV S            
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLS------------ 60

Query: 61 SAWNQEGEDIKREANGEESLRRVMYLNCWGQG 91
                GE IKREA+GEESLRRVMYLNCWGQG
Sbjct: 61 ------GEKIKREADGEESLRRVMYLNCWGQG 74

[Close]

BLAST of MELO3C013538 vs. NCBI nr
Match: gi|659110677|ref|XP_008455353.1| (PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60
          MSYL    R+ M ASVAV QG    G  H+   G+ SL Q  R+ S+   + +LRP+SS 
Sbjct: 1  MSYLN---RVGMAASVAVAQGHTEIG--HKWKSGLKSLRQGRRLLSSGENSADLRPLSSL 60

Query: 61 WNQEGE------DI-KREANGEESLRRVMYLNCWGQG 91
             EG       D+ +R A  E+SLRRVMYLNCWGQG
Sbjct: 61 VGSEGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of MELO3C013538 vs. NCBI nr
Match: gi|763744981|gb|KJB12420.1| (hypothetical protein B456_002G017000 [Gossypium raimondii])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQG-GQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISS 60
          MSYL    R+WM  S+A+VQG G++ G + ++    +   Q+ R+S  E++  NLRPIS 
Sbjct: 1  MSYLN---RVWMATSMAMVQGHGENQGQNWKSGIKFLQRGQR-RLSDGESS--NLRPISG 60

Query: 61 AWNQEGEDIKREANGEESLRRVMYLNCWGQG 91
          + +  G    R+   +ES+RRVMYLNCWGQG
Sbjct: 61 S-DLTGVVGIRDGQADESIRRVMYLNCWGQG 84

[Close]

BLAST of MELO3C013538 vs. NCBI nr
Match: gi|590690309|ref|XP_007043475.1| (Wound-responsive family protein, putative [Theobroma cacao])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-06
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1  MSYLGLGRRMWMTASVAVVQG-GQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISS 60
          MSYL    R+WM  S+AVVQG G++ G   +  K  V   Q+ +       + +LRP+S 
Sbjct: 1  MSYLN---RVWMATSMAVVQGHGENQG---QKWKAGVKFLQRGQGRLFGGDSSDLRPVSG 60

Query: 61 AWNQE--GEDIKREANGEESLRRVMYLNCWGQG 91
              +  G    R+A  +ES+RRVMYLNCWGQG
Sbjct: 61 MIGSDFPGMVGNRDAQADESIRRVMYLNCWGQG 87

[Close]

BLAST of MELO3C013538 vs. NCBI nr
Match: gi|658013265|ref|XP_008341925.1| (PREDICTED: uncharacterized protein LOC103404749 [Malus domestica])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-06
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 9  RMWMTASVAVVQGGQSDGGHHEATKGVVSLPQKLRVSS--AETTAVNLRPISSAWNQEGE 68
          R+WM ASVAVVQG    G  H+   G+ S     R SS      + +LRP+S A   +  
Sbjct: 6  RVWMAASVAVVQGPVDHG--HKWKSGLKSFQLNRRRSSFAGGDASSDLRPLSGAVGSDFS 65

Query: 69 DI-----KREANGEESLRRVMYLNCWGQG 91
           +     +R  + +ES+++VMYLNCWGQG
Sbjct: 66 GVLENCEERRNHADESIQKVMYLNCWGQG 92

The following BLAST results are available for this feature:

BLAST of MELO3C013538 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAY5_CUCSA	1.4e-26	73.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G123980 PE=4 SV=1	[more]
A0A0A0K6Z3_CUCSA	4.6e-09	47.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046690 PE=4 SV=1	[more]
A0A0D2QYX1_GOSRA	7.4e-07	43.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G017000 PE=4 SV=1	[more]
A0A061E4N2_THECC	4.8e-06	41.94	Wound-responsive family protein, putative OS=Theobroma cacao GN=TCM_007940 PE=4 ...	[more]

BLAST of MELO3C013538 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28240.1	4.3e-06	36.08	Wound-responsive family protein	[more]

BLAST of MELO3C013538 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191479\|gb\|KGN46683.1\|	2.0e-26	73.91	hypothetical protein Csa_6G123980 [Cucumis sativus]	[more]
gi\|659110677\|ref\|XP_008455353.1\|	6.6e-09	47.42	PREDICTED: uncharacterized protein LOC103495540 [Cucumis melo]	[more]
gi\|763744981\|gb\|KJB12420.1\|	1.1e-06	43.96	hypothetical protein B456_002G017000 [Gossypium raimondii]	[more]
gi\|590690309\|ref\|XP_007043475.1\|	6.9e-06	41.94	Wound-responsive family protein, putative [Theobroma cacao]	[more]
gi\|658013265\|ref\|XP_008341925.1\|	6.9e-06	40.45	PREDICTED: uncharacterized protein LOC103404749 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013538T1	MELO3C013538T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..89 score: 2.
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 5..90 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013538	Csa6G123980	Cucumber (Chinese Long) v2	cumeB451
MELO3C013538	Cla013595	Watermelon (97103) v1	mewmB128
MELO3C013538	ClCG02G017310	Watermelon (Charleston Gray)	mewcgB110
MELO3C013538	Cla97C02G043000	Watermelon (97103) v2	mewmbB112
MELO3C013538	Bhi10G000906	Wax gourd	mewgoB120
MELO3C013538	CSPI06G09920	Wild cucumber (PI 183967)	cpimeB442
MELO3C013538	Cucsa.119610	Cucumber (Gy14) v1	cgymeB178
MELO3C013538	CmoCh02G001300	Cucurbita moschata (Rifu)	cmomeB532
MELO3C013538	Lsi10G008620	Bottle gourd (USVL1VR-Ls)	lsimeB058
MELO3C013538	CsGy6G010050	Cucumber (Gy14) v2	cgybmeB388
MELO3C013538	Carg13562	Silver-seed gourd	carmeB0032
MELO3C013538	CsaV3_6G012390	Cucumber (Chinese Long) v3	cucmeB431

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013538	Silver-seed gourd	carmeB0342
MELO3C013538	Cucumber (Chinese Long) v3	cucmeB453
MELO3C013538	Wax gourd	mewgoB126
MELO3C013538	Cucumber (Gy14) v1	cgymeB179
MELO3C013538	Cucurbita maxima (Rimu)	cmameB543
MELO3C013538	Cucurbita moschata (Rifu)	cmomeB490
MELO3C013538	Wild cucumber (PI 183967)	cpimeB419
MELO3C013538	Cucumber (Chinese Long) v2	cumeB425
MELO3C013538	Cucurbita pepo (Zucchini)	cpemeB266
MELO3C013538	Cucurbita pepo (Zucchini)	cpemeB677
MELO3C013538	Bottle gourd (USVL1VR-Ls)	lsimeB051
MELO3C013538	Cucumber (Gy14) v2	cgybmeB367