MELO3C013530.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013530.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein MNN4-like
Location	chr11 : 16727196 .. 16727567 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCGAGAAGGAAGGAAAAGGAAGTGCGCGAGGAGACACAAGAAGAAAATATGCAAAAAGACAGAGAAGGTGAAGTTTGGGCTATTAAAAATAAAGGTGAAGGTAGAGGGCGTTAAGGCCCTAGCAGAGGAGGAGAAGGAAACAAAGATAAGGGAGCAAGAAGAGCTTCTTAACCAGGGTGAGAAAGTAGCCCTCtTCGCGGGAAAAGACAAAGACAAAGAAAAGACTTTTGATGAGCATTGCAAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCATTTGGAGGACAAGGGGGTAAGACCCGTGAAAAAAAGAAAGGTTACGATGAAGAAGAAGGCTCTGAGAGTAATTTACAAAGAGGCGAGCTAG

mRNA sequence

ATGAGGCGAGAAGGAAGGAAAAGGAAGTGCGCGAGGAGACACAAGAAGAAAATATGCAAAAAGACAGAGAAGGTGAAGTTTGGGCTATTAAAAATAAAGGTGAAGGTAGAGGGCGTTAAGGCCCTAGCAGAGGAGGAGAAGGAAACAAAGATAAGGGAGCAAGAAGAGCTTCTTAACCAGGGTGAGAAAGTAGCCCTCtTCGCGGGAAAAGACAAAGACAAAGAAAAGACTTTTGATGAGCATTGCAAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCATTTGGAGGACAAGGGGGTAAGACCCGTGAAAAAAAGAAAGGTTACGATGAAGAAGAAGGCTCTGAGAGTAATTTACAAAGAGGCGAGCTAG

Coding sequence (CDS)

ATGAGGCGAGAAGGAAGGAAAAGGAAGTGCGCGAGGAGACACAAGAAGAAAATATGCAAAAAGACAGAGAAGGTGAAGTTTGGGCTATTAAAAATAAAGGTGAAGGTAGAGGGCGTTAAGGCCCTAGCAGAGGAGGAGAAGGAAACAAAGATAAGGGAGCAAGAAGAGCTTCTTAACCAGGGTGAGAAAGTAGCCCTCtTCGCGGGAAAAGACAAAGACAAAGAAAAGACTTTTGATGAGCATTGCAAGGAGTTTGAGAAAGAGATTGAGGAGTTAAGTCATTTGGAGGACAAGGGGGTAAGACCCGTGAAAAAAAGAAAGGTTACGATGAAGAAGAAGGCTCTGAGAGTAATTTACAAAGAGGCGAGCTAG

Protein sequence

MRREGRKRKCARRHKKKICKKTEKVKFGLLKIKVKVEGVKALAEEEKETKIREQEELLNQGEKVALFAGKDKDKEKTFDEHCKEFEKEIEELSHLEDKGVRPVKKRKVTMKKKALRVIYKEAS

Homology

[Close]

BLAST of MELO3C013530.2 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 28  GLLKIXXXXXGVXALAEEEKETKIREQEELLNQGEKVALFAGKDKDKEKTFDEHCKEFEK 87
           GLLKI     G+ AL EE+KE K+RE+EELLN+ +KVAL   K K+ EKTF+EHC+EF+K
Sbjct: 43  GLLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE-EKTFEEHCEEFKK 102

Query: 88  EIEELSHLED 98
           EIEELS LED
Sbjct: 103 EIEELSPLED 111

[Close]

BLAST of MELO3C013530.2 vs. NCBI nr
Match: KGN44432.1 (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 34/76 (44.74%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 41  ALAEEEKETKIREQEELLNQGEKVALFAGKDKDKEKTFDEHCKEFEKEIEELSHLEDKGV 100
           AL +++K+ K+REQ+ELLN+ ++  +   K K ++   +E C+EFE+++E+LS LED+ V
Sbjct: 7   ALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVV 66

Query: 101 RPVKKRKVTMKKKALR 117
           +P+KK KVT+KK  L+
Sbjct: 67  KPLKK-KVTVKKSVLK 81

[Close]

BLAST of MELO3C013530.2 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 28  GLLKIXXXXXGVXALAEEEKETKIREQEELLNQGEKVALFAGKDKDKEKTFDEHCKEFEK 87
           GLLKI     G+ AL EE+KE K+RE+EELLN+ +KVAL   K K+ EKTF+EHC+EF+K
Sbjct: 43  GLLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE-EKTFEEHCEEFKK 102

Query: 88  EIEELSHLED 98
           EIEELS LED
Sbjct: 103 EIEELSPLED 111

[Close]

BLAST of MELO3C013530.2 vs. TrEMBL
Match: tr|A0A0A0K7W9|A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 34/76 (44.74%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 41  ALAEEEKETKIREQEELLNQGEKVALFAGKDKDKEKTFDEHCKEFEKEIEELSHLEDKGV 100
           AL +++K+ K+REQ+ELLN+ ++  +   K K ++   +E C+EFE+++E+LS LED+ V
Sbjct: 7   ALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVV 66

Query: 101 RPVKKRKVTMKKKALR 117
           +P+KK KVT+KK  L+
Sbjct: 67  KPLKK-KVTVKKSVLK 81

The following BLAST results are available for this feature:

BLAST of MELO3C013530.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465464.1	9.9e-12	64.29	PREDICTED: protein MNN4-like [Cucumis melo]	[more]
KGN44432.1	1.1e-05	44.74	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]

BLAST of MELO3C013530.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013530.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013530.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	6.5e-12	64.29	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]
tr\|A0A0A0K7W9\|A0A0A0K7W9_CUCSA	7.0e-06	44.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013530.2.1	MELO3C013530.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013530.2	Cucumber (Gy14) v2	cgybmedB390
MELO3C013530.2	Cucumber (Gy14) v1	cgymedB176
MELO3C013530.2	Cucumber (Gy14) v1	cgymedB177
MELO3C013530.2	Cucurbita maxima (Rimu)	cmamedB623
MELO3C013530.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C013530.2	Cucurbita moschata (Rifu)	cmomedB610
MELO3C013530.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C013530.2	Cucurbita pepo (Zucchini)	cpemedB808
MELO3C013530.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C013530.2	Wild cucumber (PI 183967)	cpimedB440
MELO3C013530.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C013530.2	Cucumber (Chinese Long) v2	cumedB431
MELO3C013530.2	Bottle gourd (USVL1VR-Ls)	lsimedB053
MELO3C013530.2	Bottle gourd (USVL1VR-Ls)	lsimedB061
MELO3C013530.2	Watermelon (Charleston Gray)	medwcgB105
MELO3C013530.2	Watermelon (97103) v1	medwmB123
MELO3C013530.2	Silver-seed gourd	carmedB0032
MELO3C013530.2	Silver-seed gourd	carmedB0349
MELO3C013530.2	Cucumber (Chinese Long) v3	cucmedB444
MELO3C013530.2	Watermelon (97103) v2	medwmbB104
MELO3C013530.2	Wax gourd	medwgoB121