MELO3C013517 (gene) Melon (DHL92) v3.5.1

NameMELO3C013517
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase
Locationchr11 : 15704231 .. 15704696 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACGAATTTGACAAAGATCGTGTCCTTGTTTTGATTGAATTAACCAAAACCTCCTTATCATGTCAAGAGGAAACTCTCCAGCCTATTGATGCAATCCTTATTAACCAAACTAAACCGCCCAACCCTGATAATTCAAATCAAGACATCTTCCATGAAACCTCTTATGACCTAGCAACATTGTTAGATGATACGACTAGAGAGTCTGAAGAAGGCGATAAAGAGAAGGAAGTCCCGAAGGAGACTATTGATGATCCAATCCAAGAAGAAAAAGAAAAACTCCTAGAGGACGTTGGCGAGAAAAGTCTCCCCTCACCTCCTAAGTCAATCCCAGAAGTCGTAACGTGGTTAGATAAACTGAAGGAGGTGGTGAGAGAAGAAAAAGAAGTTGACATGGACTATGTGGTTCAGTTCATGGATGAGTTTATTTGTAAACCTTTAGAGAAAGGATTTGAGGATATATTCTAG

mRNA sequence

GCACGAATTTGACAAAGATCGTGTCCTTGTTTTGATTGAATTAACCAAAACCTCCTTATCATGTCAAGAGGAAACTCTCCAGCCTATTGATGCAATCCTTATTAACCAAACTAAACCGCCCAACCCTGATAATTCAAATCAAGACATCTTCCATGAAACCTCTTATGACCTAGCAACATTGTTAGATGATACGACTAGAGAGTCTGAAGAAGGCGATAAAGAGAAGGAAGTCCCGAAGGAGACTATTGATGATCCAATCCAAGAAGAAAAAGAAAAACTCCTAGAGGACGTTGGCGAGAAAAGTCTCCCCTCACCTCCTAAGTCAATCCCAGAAGTCGTAACGTGGTTAGATAAACTGAAGGAGGTGGTGAGAGAAGAAAAAGAAGTTGACATGGACTATGTGGTTCAGTTCATGGATGAGTTTATTTGTAAACCTTTAGAGAAAGGATTTGAGGATATATTCTAG

Coding sequence (CDS)

GCACGAATTTGACAAAGATCGTGTCCTTGTTTTGATTGAATTAACCAAAACCTCCTTATCATGTCAAGAGGAAACTCTCCAGCCTATTGATGCAATCCTTATTAACCAAACTAAACCGCCCAACCCTGATAATTCAAATCAAGACATCTTCCATGAAACCTCTTATGACCTAGCAACATTGTTAGATGATACGACTAGAGAGTCTGAAGAAGGCGATAAAGAGAAGGAAGTCCCGAAGGAGACTATTGATGATCCAATCCAAGAAGAAAAAGAAAAACTCCTAGAGGACGTTGGCGAGAAAAGTCTCCCCTCACCTCCTAAGTCAATCCCAGAAGTCGTAACGTGGTTAGATAAACTGAAGGAGGTGGTGAGAGAAGAAAAAGAAGTTGACATGGACTATGTGGTTCAGTTCATGGATGAGTTTATTTGTAAACCTTTAGAGAAAGGATTTGAGGATATATTCTAG

Protein sequence

HEFDKDRVLVLIELTKTSLSCQEETLQPIDAILINQTKPPNPDNSNQDIFHETSYDLATLLDDTTRESEEGDKEKEVPKETIDDPIQEEKEKLLEDVGEKSLPSPPKSIPEVVTWLDKLKEVVREEKEVDMDYVVQFMDEFICKPLEKGFEDIF*
BLAST of MELO3C013517 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-29
Identity = 71/114 (62.28%), Postives = 82/114 (71.93%), Query Frame = 1

Query: 1   HEFDKDRVLVLIELTKTSLSCQEETLQPIDAILINQTKPPNPDNSNQDIFHETSYDLATL 60
           H+ +K  VL+L  L  TSL CQEET QP+DAI INQ KPP+P+ SNQD+FHET Y   TL
Sbjct: 36  HKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTL 95

Query: 61  LDDTTRESEEGDKEKEVPKETIDDPIQEEKEKLLEDVGEKSLPSPPKSIPEVVT 115
           LDD T+ESEEG K KEV +E IDDP+Q EKE       EKSL S PKSIPE +T
Sbjct: 96  LDDATKESEEGGKGKEVLEEAIDDPLQREKEVF---PSEKSLHSKPKSIPEALT 146

BLAST of MELO3C013517 vs. TrEMBL
Match: A0A0A0LIB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G147400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1

Query: 57  LATLLDDTTRESEEG------DKEKEVPKETIDDPIQEEKEKLLEDVGEKSLPSPPKSIP 116
           L   +DD  +ESEE        +  EV +E ++DP Q EK    E  GE  +PS PK+  
Sbjct: 42  LGAFIDDVFKESEEVAPSHVVSQSNEVLEEAVNDPFQREKVIASELDGETCIPSSPKTTI 101

Query: 117 EVVTWLDKLKEVVR-EEKEVDMDYVVQFMDEFICKPLEKGFE 152
           E     D + E VR +E+EVD +YV + +D ++CKP+EKG +
Sbjct: 102 ETPELKDTMTEDVRKDEEEVDENYVFKLVDHYVCKPMEKGLK 143

BLAST of MELO3C013517 vs. TrEMBL
Match: A0A0A0LD97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G432440 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1

Query: 82  IDD-PIQEEKEKLLEDVGEKSLPSPPKSIPEVVTWLDKLKEVVRE--EKEVDMDYVVQFM 141
           IDD P+ +E+E + E+ GE  LPS PK I E  T  DK KE ++E  E+ VD DY+  F+
Sbjct: 2   IDDYPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKENDEEVVDDDYIFYFI 61

Query: 142 DEFICKPLE 148
           +  +CKP+E
Sbjct: 62  NHHVCKPME 70

BLAST of MELO3C013517 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 71/114 (62.28%), Postives = 82/114 (71.93%), Query Frame = 1

Query: 1   HEFDKDRVLVLIELTKTSLSCQEETLQPIDAILINQTKPPNPDNSNQDIFHETSYDLATL 60
           H+ +K  VL+L  L  TSL CQEET QP+DAI INQ KPP+P+ SNQD+FHET Y   TL
Sbjct: 36  HKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTL 95

Query: 61  LDDTTRESEEGDKEKEVPKETIDDPIQEEKEKLLEDVGEKSLPSPPKSIPEVVT 115
           LDD T+ESEEG K KEV +E IDDP+Q EKE       EKSL S PKSIPE +T
Sbjct: 96  LDDATKESEEGGKGKEVLEEAIDDPLQREKEVF---PSEKSLHSKPKSIPEALT 146

BLAST of MELO3C013517 vs. NCBI nr
Match: gi|700206374|gb|KGN61493.1| (hypothetical protein Csa_2G147400 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1

Query: 57  LATLLDDTTRESEEG------DKEKEVPKETIDDPIQEEKEKLLEDVGEKSLPSPPKSIP 116
           L   +DD  +ESEE        +  EV +E ++DP Q EK    E  GE  +PS PK+  
Sbjct: 42  LGAFIDDVFKESEEVAPSHVVSQSNEVLEEAVNDPFQREKVIASELDGETCIPSSPKTTI 101

Query: 117 EVVTWLDKLKEVVR-EEKEVDMDYVVQFMDEFICKPLEKGFE 152
           E     D + E VR +E+EVD +YV + +D ++CKP+EKG +
Sbjct: 102 ETPELKDTMTEDVRKDEEEVDENYVFKLVDHYVCKPMEKGLK 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCD9_CUCME8.9e-2962.28Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LIB3_CUCSA2.1e-0939.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G147400 PE=4 SV=1[more]
A0A0A0LD97_CUCSA8.1e-0646.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G432440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307136315|gb|ADN34138.1|1.3e-2862.28hypothetical protein [Cucumis melo subsp. melo][more]
gi|700206374|gb|KGN61493.1|3.0e-0939.22hypothetical protein Csa_2G147400 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013517T1MELO3C013517T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None