MELO3C013516 (gene) Melon (DHL92) v3.5.1

NameMELO3C013516
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNucleoid-associated protein EspR
Locationchr11 : 15680634 .. 15681074 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGGCGGGAAGAGCAACAAAGCAAAGTGGACAAGGTAGCTCTCTCCATGGAGAAGAGCAAAGGAAAAGGAAAAGAAAAGACTTTTGAGGAGTTCTACGAAGAGGTTGATAAAGATATTGATGTGTTATGTCCTTTGGAGGATGAAGCATTAAAGCCTAAGAAAAAGAGGAAAGTTACCATGAAAAAAGGCTTTGAGGAACAACTTATAAAGAGGCGAGAAGAGAAGGAGATAAGCAAGATCGAGAAAGGCGAAGAAGGGAAGACTAAGGAAAGCAGGATGAAAGAGGCCCTCTATGCAACGAGAGTGAGTAGATTATTTATAGTTGAGAAGGGACTCTACCTGTACAAGGGAACTATGCATGAGATCCTCGCATCCCCCATTCGATCATTAAAAGCAATAAGACGTGGCATGGTGGACTTGTTTTATAGAAGTTAA

mRNA sequence

ATGAATGGGCGGGAAGAGCAACAAAGCAAAGTGGACAAGGTAGCTCTCTCCATGGAGAAGAGCAAAGGAAAAGGAAAAGAAAAGACTTTTGAGGAGTTCTACGAAGAGGTTGATAAAGATATTGATGTGTTATGTCCTTTGGAGGATGAAGCATTAAAGCCTAAGAAAAAGAGGAAAGTTACCATGAAAAAAGGCTTTGAGGAACAACTTATAAAGAGGCGAGAAGAGAAGGAGATAAGCAAGATCGAGAAAGGCGAAGAAGGGAAGACTAAGGAAAGCAGGATGAAAGAGGCCCTCTATGCAACGAGAGTGAGTAGATTATTTATAGTTGAGAAGGGACTCTACCTGTACAAGGGAACTATGCATGAGATCCTCGCATCCCCCATTCGATCATTAAAAGCAATAAGACGTGGCATGGTGGACTTGTTTTATAGAAGTTAA

Coding sequence (CDS)

ATGAATGGGCGGGAAGAGCAACAAAGCAAAGTGGACAAGGTAGCTCTCTCCATGGAGAAGAGCAAAGGAAAAGGAAAAGAAAAGACTTTTGAGGAGTTCTACGAAGAGGTTGATAAAGATATTGATGTGTTATGTCCTTTGGAGGATGAAGCATTAAAGCCTAAGAAAAAGAGGAAAGTTACCATGAAAAAAGGCTTTGAGGAACAACTTATAAAGAGGCGAGAAGAGAAGGAGATAAGCAAGATCGAGAAAGGCGAAGAAGGGAAGACTAAGGAAAGCAGGATGAAAGAGGCCCTCTATGCAACGAGAGTGAGTAGATTATTTATAGTTGAGAAGGGACTCTACCTGTACAAGGGAACTATGCATGAGATCCTCGCATCCCCCATTCGATCATTAAAAGCAATAAGACGTGGCATGGTGGACTTGTTTTATAGAAGTTAA

Protein sequence

MNGREEQQSKVDKVALSMEKSKGKGKEKTFEEFYEEVDKDIDVLCPLEDEALKPKKKRKVTMKKGFEEQLIKRREEKEISKIEKGEEGKTKESRMKEALYATRVSRLFIVEKGLYLYKGTMHEILASPIRSLKAIRRGMVDLFYRS*
BLAST of MELO3C013516 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 1

Query: 5   EEQQSKVDKVALSMEKSKGKGKEKTFEEFYEEVDKDIDVLCPLEDEAL-KPKKKRKVTMK 64
           EE  +KVDK+ALS+EK  GK KEKTFEEFY+E +K+ID   PLED  + +P KKR VTMK
Sbjct: 50  EELLNKVDKLALSVEK--GKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMK 109

Query: 65  KG-FEEQLIKRREEKEISKIEKGEEGKTKESRMKEALYATRVSRLFIVEKGLYLYKGTMH 124
           K    +Q  KRR+EK+    +K  E + + S  + +L    VS LF+ EKGLY YK  M 
Sbjct: 110 KKVLRDQFAKRRKEKKRRGPQKESEKEVERSEKEGSLSERHVSILFMREKGLYPYKRNMS 169

Query: 125 EILASPIR 131
           + L +PIR
Sbjct: 170 QFLEAPIR 175

BLAST of MELO3C013516 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1

Query: 4   REEQQSKVDKVALSMEKSKGKGKEKTFEEFYEEVDKDIDVLCPLEDEALKPKKKRKVTM- 63
           REE   KVD VALS EK K +  EK FE  YEE +K+ID LCPLE++ ++P KKR  TM 
Sbjct: 101 REELLGKVDNVALSAEKDKCE--EKNFEVHYEEFEKEIDKLCPLEEKVIRPAKKRTFTMK 160

Query: 64  KKGFEEQLIKRREEKEISKIEK 85
           KK   +Q  KRR E+   K +K
Sbjct: 161 KKALRKQFAKRRVEEMKRKPKK 180

BLAST of MELO3C013516 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 8.2e-09
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1

Query: 4   REEQQSKVDKVALSMEKSKGKGKEKTFEEFYEEVDKDIDVLCPLEDEALKPKKKRKVTMK 63
           +EE  +KVDKVALS+EK K   +EKTFEE  EE  K+I+ L PLEDE ++   K+K  M+
Sbjct: 69  KEELLNKVDKVALSVEKRK---EEKTFEEHCEEFKKEIEELSPLEDEVVEKSSKKKRIME 128

Query: 64  KGFEEQLIKRREEKEISKIEKGEEGKTK 92
              ++   K ++EK+  + E+ +EGK K
Sbjct: 129 G--QDDKRKEKKEKKAQQEEESQEGKRK 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659083323|ref|XP_008442290.1|7.1e-2150.78PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659090014|ref|XP_008445787.1|2.0e-1052.44PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|8.2e-0945.45PREDICTED: DNA ligase 1-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013516T1MELO3C013516T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None