MELO3C013515 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013515
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr11 : 15672449 .. 15672652 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATATGAAGGTAATAGATTAGACCCCGACGAACATCCAAGGCATAAGATCAGGTTGGAAGAGGGTCAAGAGGGCACCATTCAGTTCCATAGGCAATTGAACCACACGATGAAAGAGGTCGTTGAGAAGAAAATTATTAAGTGGCTTGACACGAGAGTAACATATCCAATCCCAGACAGTGAATGGGTTAGCTCATTGTAG

mRNA sequence

ATGCCATATGAAGGTAATAGATTAGACCCCGACGAACATCCAAGGCATAAGATCAGGTTGGAAGAGGGTCAAGAGGGCACCATTCAGTTCCATAGGCAATTGAACCACACGATGAAAGAGGTCGTTGAGAAGAAAATTATTAAGTGGCTTGACACGAGAGTAACATATCCAATCCCAGACAGTGAATGGGTTAGCTCATTGTAG

Coding sequence (CDS)

ATGCCATATGAAGGTAATAGATTAGACCCCGACGAACATCCAAGGCATAAGATCAGGTTGGAAGAGGGTCAAGAGGGCACCATTCAGTTCCATAGGCAATTGAACCACACGATGAAAGAGGTCGTTGAGAAGAAAATTATTAAGTGGCTTGACACGAGAGTAACATATCCAATCCCAGACAGTGAATGGGTTAGCTCATTGTAG

Protein sequence

MPYEGNRLDPDEHPRHKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVSSL*

Homology

[Close]

BLAST of MELO3C013515 vs. TrEMBL
Match: A0A061G8L7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-08
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 16 HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
          HKI LEE  + TI+  R+LN  MKEV++K IIKWLD  + YPI DS WVS
Sbjct: 2  HKILLEENHKTTIEHQRRLNLIMKEVIKKDIIKWLDASIIYPICDSSWVS 51

[Close]

BLAST of MELO3C013515 vs. TrEMBL
Match: A0A151QTE7_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_045544 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-06
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
           HKI +E+  +   Q  R+LN TMKEVV+K+++K L+ R+ YPI DS WVS
Sbjct: 800 HKIHMEQNYKHVAQPQRRLNPTMKEVVKKEVLKLLEARIIYPISDSTWVS 849

[Close]

BLAST of MELO3C013515 vs. TrEMBL
Match: M1DBA5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035801 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-06
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWV 65
           HKI+L    + +I+  R+LN  M+EVV+K+IIKWLD  V YPI DS WV
Sbjct: 277 HKIKLMLDHKPSIEHQRRLNPPMQEVVKKEIIKWLDAGVIYPIADSSWV 325

[Close]

BLAST of MELO3C013515 vs. TrEMBL
Match: A5BQA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021906 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVSSL 68
           HKI  EE    T+Q  R+LN +M+EVV+K+++K LD  + YPI DS WVS +
Sbjct: 171 HKILFEENYRPTVQPQRRLNPSMQEVVKKEVVKLLDAGIIYPISDSTWVSPI 222

[Close]

BLAST of MELO3C013515 vs. NCBI nr
Match: gi|698466639|ref|XP_009782959.1| (PREDICTED: uncharacterized protein LOC104231632 [Nicotiana sylvestris])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
           HKI+LE   + +++  R+LN +M+EVV+K+IIKWLDTRV YPI DS WVS
Sbjct: 157 HKIQLESQTKPSVEHQRRLNSSMQEVVKKEIIKWLDTRVVYPIVDSSWVS 206

[Close]

BLAST of MELO3C013515 vs. NCBI nr
Match: gi|823232057|ref|XP_012448735.1| (PREDICTED: uncharacterized protein LOC105771902, partial [Gossypium raimondii])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
           HKI LE+G++G I    +LN  MK+VV+K+IIKWLDT + YPI DS WVS
Sbjct: 285 HKIILEDGKKGMIDGQWRLNPIMKDVVKKEIIKWLDTGIMYPISDSSWVS 334

[Close]

BLAST of MELO3C013515 vs. NCBI nr
Match: gi|590616570|ref|XP_007023543.1| (Uncharacterized protein TCM_027580 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 16 HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
          HKI LEE  + TI+  R+LN  MKEV++K IIKWLD  + YPI DS WVS
Sbjct: 2  HKILLEENHKTTIEHQRRLNLIMKEVIKKDIIKWLDASIIYPICDSSWVS 51

[Close]

BLAST of MELO3C013515 vs. NCBI nr
Match: gi|848881901|ref|XP_012841295.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105961608 [Erythranthe guttata])

HSP 1 Score: 64.3 bits (155), Expect = 9.3e-08
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVSSL 68
           HKI LEE  + +++  R+LN  MKEVV+K+IIKWLD  + +PI DS WVSS+
Sbjct: 445 HKIILEESHKSSVEQQRRLNPIMKEVVKKEIIKWLDAGIIFPISDSAWVSSV 496

[Close]

BLAST of MELO3C013515 vs. NCBI nr
Match: gi|697121589|ref|XP_009614771.1| (PREDICTED: uncharacterized protein LOC104107627 [Nicotiana tomentosiformis])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 16  HKIRLEEGQEGTIQFHRQLNHTMKEVVEKKIIKWLDTRVTYPIPDSEWVS 66
           HKI L++G + + +  R+LN  MKEVV+K++IKWLD R+ +PI DS WVS
Sbjct: 409 HKILLKDGHKTSREHQRKLNPNMKEVVKKEVIKWLDARIIFPISDSNWVS 458

The following BLAST results are available for this feature:

BLAST of MELO3C013515 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G8L7_THECC	5.0e-08	60.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_027580 PE=4 SV=1	[more]
A0A151QTE7_CAJCA	4.7e-06	52.00	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_045544 PE=4 SV=1	[more]
M1DBA5_SOLTU	6.1e-06	55.10	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035801 PE=4 SV=1	[more]
A5BQA5_VITVI	8.0e-06	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021906 PE=4 SV=1	[more]

BLAST of MELO3C013515 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|698466639\|ref\|XP_009782959.1\|	1.1e-08	60.00	PREDICTED: uncharacterized protein LOC104231632 [Nicotiana sylvestris]	[more]
gi\|823232057\|ref\|XP_012448735.1\|	7.1e-08	60.00	PREDICTED: uncharacterized protein LOC105771902, partial [Gossypium raimondii]	[more]
gi\|590616570\|ref\|XP_007023543.1\|	7.1e-08	60.00	Uncharacterized protein TCM_027580 [Theobroma cacao]	[more]
gi\|848881901\|ref\|XP_012841295.1\|	9.3e-08	55.77	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105961608 [Erythranth...	[more]
gi\|697121589\|ref\|XP_009614771.1\|	2.1e-07	54.00	PREDICTED: uncharacterized protein LOC104107627 [Nicotiana tomentosiformis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013515T1	MELO3C013515T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013515	Bottle gourd (USVL1VR-Ls)	lsimeB051
MELO3C013515	Cucumber (Gy14) v2	cgybmeB367
MELO3C013515	Cucumber (Gy14) v2	cgybmeB388
MELO3C013515	Silver-seed gourd	carmeB0843
MELO3C013515	Cucumber (Chinese Long) v3	cucmeB431
MELO3C013515	Cucumber (Chinese Long) v3	cucmeB453
MELO3C013515	Wax gourd	mewgoB126
MELO3C013515	Cucumber (Gy14) v1	cgymeB178
MELO3C013515	Cucumber (Gy14) v1	cgymeB179
MELO3C013515	Cucurbita maxima (Rimu)	cmameB553
MELO3C013515	Cucurbita moschata (Rifu)	cmomeB542
MELO3C013515	Wild cucumber (PI 183967)	cpimeB419
MELO3C013515	Wild cucumber (PI 183967)	cpimeB442
MELO3C013515	Cucumber (Chinese Long) v2	cumeB425
MELO3C013515	Cucumber (Chinese Long) v2	cumeB451
MELO3C013515	Cucurbita pepo (Zucchini)	cpemeB659