MELO3C013510 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013510
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Biosynthetic arginine decarboxylase
Location	chr11 : 15555190 .. 15555498 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAATCCTCTATCCATTGTCGTCGACCCAACCAGCAAAAATAAACCCCTAAGCCCTAAAGAATTCAATCAAGATATCTTCCAAGATTCCTTCTCAGATCTTGCCACCTTTATTGATGGCGCGTTTAAAGAGAAAGAAGATGGAGCGAGAAGTCAAGTACTATCCCCAAAAAGAAAAGAAGTCCAGGAGGACATTATTGAAGACATACTCCAAAGAGAAAAAGAAACACTCCTTGAGGTAGATGGCGAGAAAAGCCTCCCCTCACCGCTCAAATCAACTCCAAAAGCCTCAACACGAAAAAGATAA

mRNA sequence

AAAGAAAATCCTCTATCCATTGTCGTCGACCCAACCAGCAAAAATAAACCCCTAAGCCCTAAAGAATTCAATCAAGATATCTTCCAAGATTCCTTCTCAGATCTTGCCACCTTTATTGATGGCGCGTTTAAAGAGAAAGAAGATGGAGCGAGAAGTCAAGTACTATCCCCAAAAAGAAAAGAAGTCCAGGAGGACATTATTGAAGACATACTCCAAAGAGAAAAAGAAACACTCCTTGAGGTAGATGGCGAGAAAAGCCTCCCCTCACCGCTCAAATCAACTCCAAAAGCCTCAACACGAAAAAGATAA

Coding sequence (CDS)

AAAGAAAATCCTCTATCCATTGTCGTCGACCCAACCAGCAAAAATAAACCCCTAAGCCCTAAAGAATTCAATCAAGATATCTTCCAAGATTCCTTCTCAGATCTTGCCACCTTTATTGATGGCGCGTTTAAAGAGAAAGAAGATGGAGCGAGAAGTCAAGTACTATCCCCAAAAAGAAAAGAAGTCCAGGAGGACATTATTGAAGACATACTCCAAAGAGAAAAAGAAACACTCCTTGAGGTAGATGGCGAGAAAAGCCTCCCCTCACCGCTCAAATCAACTCCAAAAGCCTCAACACGAAAAAGATAA

Protein sequence

KENPLSIVVDPTSKNKPLSPKEFNQDIFQDSFSDLATFIDGAFKEKEDGARSQVLSPKRKEVQEDIIEDILQREKETLLEVDGEKSLPSPLKSTPKASTRKR*

Homology

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BLAST of MELO3C013510 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 1   KENPLSIVVDPTSKNKPLSPKEFNQDIFQDSFSDLATFIDGAFKEKEDGARSQVLSPKRK 60
           +E P  +   P ++ KP SP+  NQD+F ++F    T +D A KE E+G        K K
Sbjct: 58  EETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGG-------KGK 117

Query: 61  EVQEDIIEDILQREKETLLEVDGEKSLPSPLKSTPKAST 100
           EV E+ I+D LQREKE       EKSL S  KS P+A T
Sbjct: 118 EVLEEAIDDPLQREKEVF---PSEKSLHSKPKSIPEALT 146

[Close]

BLAST of MELO3C013510 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 1   KENPLSIVVDPTSKNKPLSPKEFNQDIFQDSFSDLATFIDGAFKEKEDGARSQVLSPKRK 60
           +E P  +   P ++ KP SP+  NQD+F ++F    T +D A KE E+G        K K
Sbjct: 58  EETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEEGG-------KGK 117

Query: 61  EVQEDIIEDILQREKETLLEVDGEKSLPSPLKSTPKAST 100
           EV E+ I+D LQREKE       EKSL S  KS P+A T
Sbjct: 118 EVLEEAIDDPLQREKEVF---PSEKSLHSKPKSIPEALT 146

The following BLAST results are available for this feature:

BLAST of MELO3C013510 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCD9_CUCME	3.4e-08	42.42	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C013510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136315\|gb\|ADN34138.1\|	4.9e-08	42.42	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013510T1	MELO3C013510T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013510	Silver-seed gourd	carmeB0843
MELO3C013510	Cucumber (Chinese Long) v3	cucmeB431
MELO3C013510	Wax gourd	mewgoB126
MELO3C013510	Cucumber (Gy14) v1	cgymeB179
MELO3C013510	Cucurbita maxima (Rimu)	cmameB553
MELO3C013510	Cucurbita moschata (Rifu)	cmomeB542
MELO3C013510	Wild cucumber (PI 183967)	cpimeB419
MELO3C013510	Cucumber (Chinese Long) v2	cumeB425
MELO3C013510	Cucurbita pepo (Zucchini)	cpemeB659
MELO3C013510	Bottle gourd (USVL1VR-Ls)	lsimeB051
MELO3C013510	Cucumber (Gy14) v2	cgybmeB367