MELO3C013475 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013475
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 23
Locationchr11 : 14578786 .. 14579217 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGTTGTCATCCACTCCACCAAACACCTCTCACACGCCGCCGTCAGAGCTACACATGCTAGTTCATCCTCCTCTGATAGTGTTAGTCATCCCATCTGTGCAACCATCTTCTTCATCTGCGGCCTATATCGCTTCTCACGCCCCAATTCATGTACTGTCGCCTAATTCCGGTCAACCACCACTGCTTCTACCGTCAAATCTGTATGCCTTGCCACCCACTTACCTTAGTTATCATCTTGATGTTAAGAATTCTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGACAAACTCCGACCTTAACATGCAAGCTTCCTCTTTAGGAATAGCTCAACAACAACTTGAAGGGCTTCAACAACAGATTGCAGAAATTGAGGCTACCTTAGGGACGACATCCAACACTCTTGCACCAATGTATTTTTAG

mRNA sequence

ATGATTCTGTTGTCATCCACTCCACCAAACACCTCTCACACGCCGCCGTCAGAGCTACACATGCTAGTTCATCCTCCTCTGATAGTGTTAGTCATCCCATCTGTGCAACCATCTTCTTCATCTGCGGCCTATATCGCTTCTCACGCCCCAATTCATGTACTGTCGCCTAATTCCGGTCAACCACCACTGCTTCTACCGTCAAATCTGTATGCCTTGCCACCCACTTACCTTAGTTATCATCTTGATGTTAAGAATTCTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGACAAACTCCGACCTTAACATGCAAGCTTCCTCTTTAGGAATAGCTCAACAACAACTTGAAGGGCTTCAACAACAGATTGCAGAAATTGAGGCTACCTTAGGGACGACATCCAACACTCTTGCACCAATGTATTTTTAG

Coding sequence (CDS)

ATGATTCTGTTGTCATCCACTCCACCAAACACCTCTCACACGCCGCCGTCAGAGCTACACATGCTAGTTCATCCTCCTCTGATAGTGTTAGTCATCCCATCTGTGCAACCATCTTCTTCATCTGCGGCCTATATCGCTTCTCACGCCCCAATTCATGTACTGTCGCCTAATTCCGGTCAACCACCACTGCTTCTACCGTCAAATCTGTATGCCTTGCCACCCACTTACCTTAGTTATCATCTTGATGTTAAGAATTCTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGACAAACTCCGACCTTAACATGCAAGCTTCCTCTTTAGGAATAGCTCAACAACAACTTGAAGGGCTTCAACAACAGATTGCAGAAATTGAGGCTACCTTAGGGACGACATCCAACACTCTTGCACCAATGTATTTTTAG

Protein sequence

MILLSSTPPNTSHTPPSELHMLVHPPLIVLVIPSVQPSSSSAAYIASHAPIHVLSPNSGQPPLLLPSNLYALPPTYLSYHLDVKNSQIHSTFEVGESSTNSDLNMQASSLGIAQQQLEGLQQQIAEIEATLGTTSNTLAPMYF*
Homology
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BLAST of MELO3C013475 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 40  SSAAYIASHAPIHVLSPNSGQPPLLLPSNLYALPPTYLSYHLDVKNSQIHSTFEV 95
           S  AYIA H  I+VL PN GQPP LLPSNLYA+PP   SYH DVKN Q HSTFEV
Sbjct: 156 SKQAYIAPHTRIYVLPPNFGQPPPLLPSNLYAMPPIDPSYHPDVKNPQNHSTFEV 210

The following BLAST results are available for this feature:
BLAST of MELO3C013475 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688605|ref|XP_004149788.2|1.0e-1170.91PREDICTED: kirola-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013475T1MELO3C013475T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 110..137
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013475Cucurbita pepo (Zucchini)cpemeB213
MELO3C013475Cucurbita pepo (Zucchini)cpemeB251
MELO3C013475Cucurbita pepo (Zucchini)cpemeB257
MELO3C013475Cucurbita pepo (Zucchini)cpemeB601
MELO3C013475Cucurbita pepo (Zucchini)cpemeB659
MELO3C013475Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C013475Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C013475Cucumber (Gy14) v2cgybmeB367
MELO3C013475Cucumber (Gy14) v2cgybmeB454
MELO3C013475Silver-seed gourdcarmeB0197
MELO3C013475Silver-seed gourdcarmeB0350
MELO3C013475Silver-seed gourdcarmeB0352
MELO3C013475Silver-seed gourdcarmeB0843
MELO3C013475Silver-seed gourdcarmeB1032
MELO3C013475Cucumber (Chinese Long) v3cucmeB431
MELO3C013475Cucumber (Chinese Long) v3cucmeB534
MELO3C013475Watermelon (97103) v2mewmbB094
MELO3C013475Watermelon (97103) v2mewmbB098
MELO3C013475Watermelon (97103) v2mewmbB114
MELO3C013475Wax gourdmewgoB107
MELO3C013475Wax gourdmewgoB122
MELO3C013475Wax gourdmewgoB126
MELO3C013475Melon (DHL92) v3.5.1memeB041
MELO3C013475Cucumber (Gy14) v1cgymeB119
MELO3C013475Cucumber (Gy14) v1cgymeB179
MELO3C013475Cucurbita maxima (Rimu)cmameB085
MELO3C013475Cucurbita maxima (Rimu)cmameB451
MELO3C013475Cucurbita maxima (Rimu)cmameB494
MELO3C013475Cucurbita maxima (Rimu)cmameB506
MELO3C013475Cucurbita maxima (Rimu)cmameB553
MELO3C013475Cucurbita moschata (Rifu)cmomeB081
MELO3C013475Cucurbita moschata (Rifu)cmomeB443
MELO3C013475Cucurbita moschata (Rifu)cmomeB499
MELO3C013475Cucurbita moschata (Rifu)cmomeB482
MELO3C013475Cucurbita moschata (Rifu)cmomeB542
MELO3C013475Wild cucumber (PI 183967)cpimeB419
MELO3C013475Wild cucumber (PI 183967)cpimeB522
MELO3C013475Cucumber (Chinese Long) v2cumeB425
MELO3C013475Cucumber (Chinese Long) v2cumeB517
MELO3C013475Watermelon (Charleston Gray)mewcgB092
MELO3C013475Watermelon (Charleston Gray)mewcgB096
MELO3C013475Watermelon (Charleston Gray)mewcgB112
MELO3C013475Watermelon (97103) v1mewmB110
MELO3C013475Watermelon (97103) v1mewmB115