MELO3C013464 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013464
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA binding protein, putative
Location	chr11 : 14307796 .. 14308627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAGAAAGGATTTTAATAAATAAAAAGAATTCGAAAGTTCTGAACCCTAAGGACGGGGAAGATATGAATTTGCTGGAGCAAGGGTTGATGAAGAAACTCAGTCTCCAACAGTTTTTGAAGCTGCTTTTTCCTCTCTTAATCCAATGGAGATTCACTTCCACTAGTGTCTTCCTTCGTATTACTATTTCCAAGTTTCAAAAACTTCTTCCTTGAATTTTCCGTAGTAGCTTTCGGTCTTTTTTTTCTTTTCCTTTTTGGCTTGAAATGGTGAGTTCTTTTCGCTTCAATGTAGTTTGAACTTTATTTCCATGCTGTGTTCGTTCCTCTAATTCGATTTCTTGTTTTTGATTAGTCGGGTCGGGTTGATGGAGGAAGGGATCGTTACCGAAAAGATTATATGTCGAGATTTGACGAGAAGCCACAGTCTGGCCATAGCAATAGCAGCAATCCTCCTTCGAGACATCTTTGGGTTGGAAATTTGGCTCATGTTGTAGTTGAGCGTGATCTTAGCCGCTACTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTAGGAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCAATGGCTGCCATGAGAGAGCTTCAAGGTTTTTCTCTTGGAGGGAATCCCATTAAAATTGAGTTTACCAAGGCGGTTAGTCTTGCCCCAACTTATATAATCTATCTGTTCCTTTCTTCAAATTCTTTTTTATGTTTCCTTATTGTATATCTTTGATAAATATATTTATTTATTGGAAAACTTCAGTATGAGAAATTATGACATGACACCACTTCAACTCGTGTACCTC

mRNA sequence

AGGAAGAAAGGATTTTAATAAATAAAAAGAATTCGAAAGTTCTGAACCCTAAGGACGGGGAAGATATGAATTTGCTGGAGCAAGGGTTGATGAAGAAACTCAGTCTCCAACAGTTTTTGAAGCTGCTTTTTCCTCTCTTAATCCAATGGAGATTCACTTCCACTAGTGTCTTCCTTCGTATTACTATTTCCAAGTTTCAAAAACTTCTTCCTTGAATTTTCCGTAGTAGCTTTCGGTCTTTTTTTTCTTTTCCTTTTTGGCTTGAAATGTCGGGTCGGGTTGATGGAGGAAGGGATCGTTACCGAAAAGATTATATGTCGAGATTTGACGAGAAGCCACAGTCTGGCCATAGCAATAGCAGCAATCCTCCTTCGAGACATCTTTGGGTTGGAAATTTGGCTCATGTTGTAGTTGAGCGTGATCTTAGCCGCTACTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTAGGAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCAATGGCTGCCATGAGAGAGCTTCAAGGTTTTTCTCTTGGAGGGAATCCCATTAAAATTGAGTTTACCAAGGCGGTTAGTCTTGCCCCAACTTATATAATCTATCTGTTCCTTTCTTCAAATTCTTTTTTATGTTTCCTTATTGTATATCTTTGATAAATATATTTATTTATTGGAAAACTTCAGTATGAGAAATTATGACATGACACCACTTCAACTCGTGTACCTC

Coding sequence (CDS)

ATGTCGGGTCGGGTTGATGGAGGAAGGGATCGTTACCGAAAAGATTATATGTCGAGATTTGACGAGAAGCCACAGTCTGGCCATAGCAATAGCAGCAATCCTCCTTCGAGACATCTTTGGGTTGGAAATTTGGCTCATGTTGTAGTTGAGCGTGATCTTAGCCGCTACTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTAGGAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCAATGGCTGCCATGAGAGAGCTTCAAGGTTTTTCTCTTGGAGGGAATCCCATTAAAATTGAGTTTACCAAGGCGGTTAGTCTTGCCCCAACTTATATAATCTATCTGTTCCTTTCTTCAAATTCTTTTTTATGTTTCCTTATTGTATATCTTTGA

Protein sequence

MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSLAPTYIIYLFLSSNSFLCFLIVYL*

Homology

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BLAST of MELO3C013464 vs. Swiss-Prot
Match: FPA_ARATH (Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 29  SNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAA 88
           ++ S   S +LWVG+L     E DL+  F ++G++D I    SR +AFI ++  E+A+AA
Sbjct: 10  ADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAA 69

Query: 89  MRELQGFSLGGNPIKIEFTK 109
              LQG +L G+ IKIE+ +
Sbjct: 70  KEALQGANLNGSQIKIEYAR 89

HSP 2 Score: 51.6 bits (122), Expect = 7.8e-06
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 35  PSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQG 94
           P + LWVG +   V + DL   FS+FG+++   F   R  AFI++   +DA+ A + + G
Sbjct: 93  PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 152

Query: 95  FSLGGNPIKIEFTKA 110
             +GG+ ++++F ++
Sbjct: 153 KPMGGSFLRVDFLRS 166

HSP 3 Score: 42.0 bits (97), Expect = 6.2e-03
Identity = 28/94 (29.79%), Postives = 40/94 (42.55%), Query Frame = 1


Query: 21  DEKPQSGHS----NSSNPPSRHLWVG---NLAHVVVERDLSRYFSQFGELDSIAFQPSRS 80
           + KPQ  HS         PS+ LW+G          E+ L      FGE++ +   PSR+
Sbjct: 186 NHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRN 245

Query: 81  YAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFT 108
           +A + F+  E+A      LQG       IKI ++
Sbjct: 246 FALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYS 279

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BLAST of MELO3C013464 vs. Swiss-Prot
Match: MINT_MOUSE (Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 25/82 (30.49%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 35  PSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQG 94
           P+  +W+  L+  V ++ L+R+F ++G +  + F   +  A + +   EDA AA++E +G
Sbjct: 516 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAAVKETKG 575

Query: 95  FSLGGNPIKIEFTKAVSLAPTY 117
             +GGN IK++F    S    Y
Sbjct: 576 RKIGGNKIKVDFANRESQLAFY 597

HSP 2 Score: 39.7 bits (91), Expect = 3.1e-02
Identity = 21/78 (26.92%), Postives = 39/78 (50.00%), Query Frame = 1


Query: 36  SRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRS-----YAFINFKRDEDAMAAMR 95
           +RHLWVGNL   V E  +  +F ++G ++S+   P R       AF++F   + A  A  
Sbjct: 5   TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHN 64

Query: 96  ELQGFSLGGNPIKIEFTK 109
            +    +G   ++ ++ +
Sbjct: 65  SVN--KMGDRDLRTDYNE 80

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BLAST of MELO3C013464 vs. Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 39  LWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLG 98
           L+V NLA+ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L 
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 399

Query: 99  GNPIKIEFTK 109
           G  I+I F K
Sbjct: 400 GENIEIVFAK 407

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BLAST of MELO3C013464 vs. Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 39  LWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLG 98
           L+V NLA+ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L 
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 399

Query: 99  GNPIKIEFTK 109
           G  I+I F K
Sbjct: 400 GENIEIVFAK 407

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BLAST of MELO3C013464 vs. Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 39  LWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLG 98
           L+V NLA+ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L 
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 309

Query: 99  GNPIKIEFTK 109
           G  I+I F K
Sbjct: 310 GENIEIVFAK 317

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BLAST of MELO3C013464 vs. TrEMBL
Match: A0A0A0KA84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-55
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60
           MSGRVDGGRDRYRKDY SRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF
Sbjct: 1   MSGRVDGGRDRYRKDYTSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 110
           GELDSIAFQPSRSYAF+NFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA
Sbjct: 61  GELDSIAFQPSRSYAFVNFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 109

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BLAST of MELO3C013464 vs. TrEMBL
Match: A0A0A0KA84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-04
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 25  QSGHSNSSNPPSRHLWVGNLAHVVV-ERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDE 84
           +S  S+ +  PS  LW+G  A + V E  L + FS FGE+D I   P R+YAF+ F+   
Sbjct: 151 KSKMSDKNTEPSEVLWIGFPALLKVDEMILRKAFSPFGEIDKITTFPGRTYAFVRFRGVT 210

Query: 85  DAMAAMRELQGFSLGGNPIKIEFTK 109
            A  A   LQG   G   + I F K
Sbjct: 211 SAWRAKETLQGKLFGNPRVHICFAK 235

HSP 2 Score: 148.3 bits (373), Expect = 6.9e-33
Identity = 71/127 (55.91%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 1   MSGRVD--GGRDRYRKDYMSRFDEKPQSGHSN----SSNPPSRHLWVGNLAHVVVERDLS 60
           MS ++D  GGRDR+R+DY SR+++   +G S     + NPPSRHLWVGNL+H +VE +L+
Sbjct: 1   MSKKLDRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRNDNPPSRHLWVGNLSHSIVEEELA 60

Query: 61  RYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSLAP 120
           R+F +FG L+++AFQ  RSYAF+NF+RDEDA+ AMR LQGF L GNP++IEF KAVS+A 
Sbjct: 61  RHFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRTLQGFPLAGNPLRIEFAKAVSVAH 120

Query: 121 TYIIYLF 122
             ++  F
Sbjct: 121 LLLLVTF 127

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BLAST of MELO3C013464 vs. TrEMBL
Match: A0A068UCB8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021528001 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 2   SGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFG 61
           SGR  GGRDR+R+++  R +EK    H   SNPPSRHLWVGNL+H + E  L+ +F QFG
Sbjct: 8   SGR--GGRDRFRREHPLRSEEK---SHHGRSNPPSRHLWVGNLSHNLDESSLTHHFLQFG 67

Query: 62  ELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSLAPTYII 119
           EL+++AFQP RSYAFINFK +EDA AAMRELQGFS+ GNP++IEFTKAVS     +I
Sbjct: 68  ELENVAFQPGRSYAFINFKNEEDAFAAMRELQGFSVAGNPLRIEFTKAVSFVNLCLI 119

[Close]

BLAST of MELO3C013464 vs. TrEMBL
Match: A0A0B2NU09_GLYSO (Flowering time control protein FPA OS=Glycine soja GN=glysoja_045877 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.8e-32
Identity = 71/132 (53.79%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSG-----------HSNSSNPPSRHLWVGNLAHVVV 60
           MSGR  GGRDR+R+DY SR ++   +G           +SN +NPPSRHLWVGNL+H +V
Sbjct: 1   MSGR-GGGRDRFRRDYPSRHEDNRGNGISGRDNRNSNRNSNRNNPPSRHLWVGNLSHNIV 60

Query: 61  ERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 120
           E +L+ +F ++G L+++AFQP RSYAFINF+ DEDA+ A+R LQGF L GNP++IEF KA
Sbjct: 61  EEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKA 120

Query: 121 VSLAPTYIIYLF 122
           VS+A   ++  F
Sbjct: 121 VSVAHLLLLVTF 131

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BLAST of MELO3C013464 vs. TrEMBL
Match: A0A0R0E777_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G049400 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-31
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSG-------HSNSSNPPSRHLWVGNLAHVVVERDL 60
           MSGR  GGRDR+R+DY SR ++   +G       +SNS+NPPSRHLWVGNL+H +VE +L
Sbjct: 1   MSGR-GGGRDRFRRDYPSRHEDNRGNGISGRDNRNSNSNNPPSRHLWVGNLSHNIVEEEL 60

Query: 61  SRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 110
           + +F ++G L+++AFQP RSYAFINF+ DEDA+ A+R LQGF L GNP++IEF KA
Sbjct: 61  AHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKA 115

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BLAST of MELO3C013464 vs. TAIR10
Match: AT4G12640.1 (AT4G12640.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 33  NPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMREL 92
           NPPSRHLWVGNL H ++ER+L+  F +FGEL+S+AFQP RSYAF+NF  DEDA AA+  L
Sbjct: 19  NPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESL 78

Query: 93  QGFSLGGNPIKIEFTKA 110
           QGF L GNP++IEF KA
Sbjct: 79  QGFPLSGNPLRIEFAKA 95

HSP 2 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 21  DEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSR-YFSQFGELDSIAFQPSRSYAFINF 80
           D   +S  ++ +  PS  L++G  A + V+  L R  FS FGE+  +   P RSYAF+ F
Sbjct: 135 DTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQF 194

Query: 81  KRDEDAMAAMRELQGFSLGGNPIKIEFTKA 110
           +    A  A   LQG   G   + I F K+
Sbjct: 195 RNLMAACKAKESLQGKLFGNPRVHICFAKS 224

[Close]

BLAST of MELO3C013464 vs. TAIR10
Match: AT2G43410.2 (AT2G43410.2 RNA binding)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 29  SNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAA 88
           ++ S   S +LWVG+L     E DL+  F ++G++D I    SR +AFI ++  E+A+AA
Sbjct: 10  ADDSGFQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAA 69

Query: 89  MRELQGFSLGGNPIKIEFTK 109
              LQG +L G+ IKIE+ +
Sbjct: 70  KEALQGANLNGSQIKIEYAR 89

HSP 2 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 35  PSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQG 94
           P + LWVG +   V + DL   FS+FG+++   F   R  AFI++   +DA+ A + + G
Sbjct: 93  PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 152

Query: 95  FSLGGNPIKIEFTKA 110
             +GG+ ++++F ++
Sbjct: 153 KPMGGSFLRVDFLRS 166

HSP 3 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 28/94 (29.79%), Postives = 40/94 (42.55%), Query Frame = 1


Query: 21  DEKPQSGHS----NSSNPPSRHLWVG---NLAHVVVERDLSRYFSQFGELDSIAFQPSRS 80
           + KPQ  HS         PS+ LW+G          E+ L      FGE++ +   PSR+
Sbjct: 186 NHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRN 245

Query: 81  YAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFT 108
           +A + F+  E+A      LQG       IKI ++
Sbjct: 246 FALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYS 279

[Close]

BLAST of MELO3C013464 vs. TAIR10
Match: AT5G25060.1 (AT5G25060.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 37/111 (33.33%), Postives = 52/111 (46.85%), Query Frame = 1


Query: 18  SRFDEKPQS-------GHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAF-- 77
           SRFDE P         G  +  +P + +L+VGNL+  V E  L R F +FG + S+    
Sbjct: 153 SRFDELPDDFDPSGRPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMW 212

Query: 78  -------QPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSL 113
                  +  R+  F++F    D  AA  E+QG  +    +KI + KAVSL
Sbjct: 213 PRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSL 263

[Close]

BLAST of MELO3C013464 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.8e-07
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 18  SRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQ------PS 77
           S F   PQ   S+S++P S+ L++G L+  V E+ L   FS FGE+  +          S
Sbjct: 23  SSFHFLPQFCTSSSASPSSK-LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRS 82

Query: 78  RSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEF 107
           R + F++F  + DA++A   + G  L G P++I F
Sbjct: 83  RGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 116

[Close]

BLAST of MELO3C013464 vs. TAIR10
Match: AT4G27000.1 (AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 26/85 (30.59%), Postives = 40/85 (47.06%), Query Frame = 1


Query: 27  GHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAM 86
           G+S  S+P +  ++VG +   V E DL   F QFGEL  +     +   F+ +     A 
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAE 327

Query: 87  AAMRELQGFSLGGNPIKIEFTKAVS 112
            A+  L G  LGG  I++ + ++ S
Sbjct: 328 QALSVLNGTQLGGQSIRLSWGRSPS 352

[Close]

BLAST of MELO3C013464 vs. NCBI nr
Match: gi|659094591|ref|XP_008448142.1| (PREDICTED: flowering time control protein FPA [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 6.3e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60
           MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF
Sbjct: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 110
           GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA
Sbjct: 61  GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 109

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BLAST of MELO3C013464 vs. NCBI nr
Match: gi|659094591|ref|XP_008448142.1| (PREDICTED: flowering time control protein FPA [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-04
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 25  QSGHSNSSNPPSRHLWVGNLAHVVV-ERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDE 84
           +S  S+ +  PS  LW+G  A + V E  L + FS FGE+D I   P R+YAF+ F+   
Sbjct: 151 KSKMSDKNTEPSEVLWIGFPALLKVDEMILRKAFSPFGEIDKITTFPGRTYAFVRFRGVA 210

Query: 85  DAMAAMRELQGFSLGGNPIKIEFTK 109
            A  A   LQG   G   + I F K
Sbjct: 211 SAWRAKETLQGKLFGNPRVHICFAK 235

HSP 2 Score: 222.6 bits (566), Expect = 4.1e-55
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60
           MSGRVDGGRDRYRKDY SRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF
Sbjct: 1   MSGRVDGGRDRYRKDYTSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 110
           GELDSIAFQPSRSYAF+NFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA
Sbjct: 61  GELDSIAFQPSRSYAFVNFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 109

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BLAST of MELO3C013464 vs. NCBI nr
Match: gi|449444608|ref|XP_004140066.1| (PREDICTED: flowering time control protein FPA [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-04
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 25  QSGHSNSSNPPSRHLWVGNLAHVVV-ERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDE 84
           +S  S+ +  PS  LW+G  A + V E  L + FS FGE+D I   P R+YAF+ F+   
Sbjct: 151 KSKMSDKNTEPSEVLWIGFPALLKVDEMILRKAFSPFGEIDKITTFPGRTYAFVRFRGVT 210

Query: 85  DAMAAMRELQGFSLGGNPIKIEFTK 109
            A  A   LQG   G   + I F K
Sbjct: 211 SAWRAKETLQGKLFGNPRVHICFAK 235

HSP 2 Score: 148.3 bits (373), Expect = 9.8e-33
Identity = 71/127 (55.91%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 1   MSGRVD--GGRDRYRKDYMSRFDEKPQSGHSN----SSNPPSRHLWVGNLAHVVVERDLS 60
           MS ++D  GGRDR+R+DY SR+++   +G S     + NPPSRHLWVGNL+H +VE +L+
Sbjct: 1   MSKKLDRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRNDNPPSRHLWVGNLSHSIVEEELA 60

Query: 61  RYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSLAP 120
           R+F +FG L+++AFQ  RSYAF+NF+RDEDA+ AMR LQGF L GNP++IEF KAVS+A 
Sbjct: 61  RHFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRTLQGFPLAGNPLRIEFAKAVSVAH 120

Query: 121 TYIIYLF 122
             ++  F
Sbjct: 121 LLLLVTF 127

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BLAST of MELO3C013464 vs. NCBI nr
Match: gi|661890639|emb|CDP06136.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 2   SGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQFG 61
           SGR  GGRDR+R+++  R +EK    H   SNPPSRHLWVGNL+H + E  L+ +F QFG
Sbjct: 8   SGR--GGRDRFRREHPLRSEEK---SHHGRSNPPSRHLWVGNLSHNLDESSLTHHFLQFG 67

Query: 62  ELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKAVSLAPTYII 119
           EL+++AFQP RSYAFINFK +EDA AAMRELQGFS+ GNP++IEFTKAVS     +I
Sbjct: 68  ELENVAFQPGRSYAFINFKNEEDAFAAMRELQGFSVAGNPLRIEFTKAVSFVNLCLI 119

[Close]

BLAST of MELO3C013464 vs. NCBI nr
Match: gi|734305623|gb|KHM98707.1| (Flowering time control protein FPA [Glycine soja])

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-32
Identity = 71/132 (53.79%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSG-----------HSNSSNPPSRHLWVGNLAHVVV 60
           MSGR  GGRDR+R+DY SR ++   +G           +SN +NPPSRHLWVGNL+H +V
Sbjct: 1   MSGR-GGGRDRFRRDYPSRHEDNRGNGISGRDNRNSNRNSNRNNPPSRHLWVGNLSHNIV 60

Query: 61  ERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKA 120
           E +L+ +F ++G L+++AFQP RSYAFINF+ DEDA+ A+R LQGF L GNP++IEF KA
Sbjct: 61  EEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKA 120

Query: 121 VSLAPTYIIYLF 122
           VS+A   ++  F
Sbjct: 121 VSVAHLLLLVTF 131

The following BLAST results are available for this feature:

BLAST of MELO3C013464 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FPA_ARATH	1.4e-10	40.00	Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2	[more]
MINT_MOUSE	1.2e-06	30.49	Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2	[more]
HNRPQ_HUMAN	1.6e-06	42.86	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2	[more]
HNRPQ_MOUSE	1.6e-06	42.86	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2	[more]
HNRPQ_RAT	1.6e-06	42.86	Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 S...	[more]

BLAST of MELO3C013464 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA84_CUCSA	2.9e-55	98.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1	[more]
A0A0A0KA84_CUCSA	3.9e-04	38.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1	[more]
A0A068UCB8_COFCA	1.5e-32	62.39	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021528001 PE=4 SV=1	[more]
A0A0B2NU09_GLYSO	5.8e-32	53.79	Flowering time control protein FPA OS=Glycine soja GN=glysoja_045877 PE=4 SV=1	[more]
A0A0R0E777_SOYBN	4.9e-31	58.62	Uncharacterized protein OS=Glycine max GN=GLYMA_20G049400 PE=4 SV=1	[more]

BLAST of MELO3C013464 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12640.1	1.1e-26	67.53	RNA recognition motif (RRM)-containing protein	[more]
AT2G43410.2	7.8e-12	40.00	RNA binding	[more]
AT5G25060.1	2.6e-07	33.33	RNA recognition motif (RRM)-containing protein	[more]
AT3G08000.1	5.8e-07	33.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G27000.1	3.7e-06	30.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MELO3C013464 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094591\|ref\|XP_008448142.1\|	6.3e-56	100.00	PREDICTED: flowering time control protein FPA [Cucumis melo]	[more]
gi\|659094591\|ref\|XP_008448142.1\|	5.6e-04	38.82	PREDICTED: flowering time control protein FPA [Cucumis melo]	[more]
gi\|449444608\|ref\|XP_004140066.1\|	5.6e-04	38.82	PREDICTED: flowering time control protein FPA [Cucumis sativus]	[more]
gi\|661890639\|emb\|CDP06136.1\|	2.2e-32	62.39	unnamed protein product [Coffea canephora]	[more]
gi\|734305623\|gb\|KHM98707.1\|	8.3e-32	53.79	Flowering time control protein FPA [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61020	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013464T1	MELO3C013464T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61020	MU61020	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..103 score: 1.6
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..105 score: 3.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 37..109 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 26..108 score: 2.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 21..109 score: 1.33
None	No IPR available	PANTHER	PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	coord: 33..120 score: 5.4
None	No IPR available	PANTHER	PTHR23189:SF41	BCDNA.GH11110	coord: 33..120 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013464	Csa6G115600	Cucumber (Chinese Long) v2	cumeB425
MELO3C013464	Cla002551	Watermelon (97103) v1	mewmB115
MELO3C013464	ClCG02G010590	Watermelon (Charleston Gray)	mewcgB096
MELO3C013464	Cla97C02G036460	Watermelon (97103) v2	mewmbB098
MELO3C013464	Bhi10G000977	Wax gourd	mewgoB122
MELO3C013464	CSPI06G09400	Wild cucumber (PI 183967)	cpimeB419
MELO3C013464	Cucsa.120120	Cucumber (Gy14) v1	cgymeB179
MELO3C013464	CmaCh02G003170	Cucurbita maxima (Rimu)	cmameB553
MELO3C013464	Lsi10G000270	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C013464	Cp4.1LG16g03620	Cucurbita pepo (Zucchini)	cpemeB251
MELO3C013464	Cp4.1LG05g13210	Cucurbita pepo (Zucchini)	cpemeB659
MELO3C013464	CsGy6G009500	Cucumber (Gy14) v2	cgybmeB367
MELO3C013464	Carg19788	Silver-seed gourd	carmeB0843

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013464	Wax gourd	mewgoB107
MELO3C013464	Wax gourd	mewgoB126
MELO3C013464	Melon (DHL92) v3.5.1	memeB041
MELO3C013464	Cucumber (Gy14) v1	cgymeB119
MELO3C013464	Cucurbita maxima (Rimu)	cmameB085
MELO3C013464	Cucurbita maxima (Rimu)	cmameB451
MELO3C013464	Cucurbita maxima (Rimu)	cmameB494
MELO3C013464	Cucurbita maxima (Rimu)	cmameB506
MELO3C013464	Cucurbita moschata (Rifu)	cmomeB081
MELO3C013464	Cucurbita moschata (Rifu)	cmomeB443
MELO3C013464	Cucurbita moschata (Rifu)	cmomeB499
MELO3C013464	Cucurbita moschata (Rifu)	cmomeB482
MELO3C013464	Cucurbita moschata (Rifu)	cmomeB542
MELO3C013464	Wild cucumber (PI 183967)	cpimeB522
MELO3C013464	Cucumber (Chinese Long) v2	cumeB517
MELO3C013464	Watermelon (Charleston Gray)	mewcgB092
MELO3C013464	Watermelon (Charleston Gray)	mewcgB112
MELO3C013464	Watermelon (97103) v1	mewmB110
MELO3C013464	Cucurbita pepo (Zucchini)	cpemeB213
MELO3C013464	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C013464	Cucurbita pepo (Zucchini)	cpemeB601
MELO3C013464	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C013464	Cucumber (Gy14) v2	cgybmeB454
MELO3C013464	Silver-seed gourd	carmeB0197
MELO3C013464	Silver-seed gourd	carmeB0350
MELO3C013464	Silver-seed gourd	carmeB0352
MELO3C013464	Cucumber (Chinese Long) v3	cucmeB431
MELO3C013464	Cucumber (Chinese Long) v3	cucmeB534
MELO3C013464	Watermelon (97103) v2	mewmbB094
MELO3C013464	Watermelon (97103) v2	mewmbB114