MELO3C013447 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013447
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent helicase/nuclease subunit A
Locationchr1 : 17134583 .. 17135032 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATTCCAAAAACACTTCGATGGGAAGAAATCACTCATAATTCCATTTGGAAACTACAAGAAGTAACAGCCCCTGCCAAAAGAATTAGTACAGAGGCATCAATCATCGATTTTCCAGATGGAAATGTCGAAATTCAATTTAATTCTGAAGCAAGATATCCCAAAATTAGGGAAATCATGAGTAGCCATCCTAGCATGTCTTCGAATGCCAGAACTGTAAACTCTTTTCCTGAATCTTTTAGGAGATTTGAATCAATGAGAGCAGCAGTGGAATTCACTCATCCAGTCCCCAACATTCAATATGAAAAGGAAGAAGGATCGCTTTCTCCTACCCAATCTGATATGGAAACGAGAACTGAGCCAATCTACAACCAACTTAATGTCATTTCCAGCAAAGATGATAATGCACGTTATGAGGAAATGTACAGCAAATACATAGATATATGA

mRNA sequence

ATGACTATTCCAAAAACACTTCGATGGGAAGAAATCACTCATAATTCCATTTGGAAACTACAAGAAGTAACAGCCCCTGCCAAAAGAATTAGTACAGAGGCATCAATCATCGATTTTCCAGATGGAAATGTCGAAATTCAATTTAATTCTGAAGCAAGATATCCCAAAATTAGGGAAATCATGAGTAGCCATCCTAGCATGTCTTCGAATGCCAGAACTGTAAACTCTTTTCCTGAATCTTTTAGGAGATTTGAATCAATGAGAGCAGCAGTGGAATTCACTCATCCAGTCCCCAACATTCAATATGAAAAGGAAGAAGGATCGCTTTCTCCTACCCAATCTGATATGGAAACGAGAACTGAGCCAATCTACAACCAACTTAATGTCATTTCCAGCAAAGATGATAATGCACGTTATGAGGAAATGTACAGCAAATACATAGATATATGA

Coding sequence (CDS)

ATGACTATTCCAAAAACACTTCGATGGGAAGAAATCACTCATAATTCCATTTGGAAACTACAAGAAGTAACAGCCCCTGCCAAAAGAATTAGTACAGAGGCATCAATCATCGATTTTCCAGATGGAAATGTCGAAATTCAATTTAATTCTGAAGCAAGATATCCCAAAATTAGGGAAATCATGAGTAGCCATCCTAGCATGTCTTCGAATGCCAGAACTGTAAACTCTTTTCCTGAATCTTTTAGGAGATTTGAATCAATGAGAGCAGCAGTGGAATTCACTCATCCAGTCCCCAACATTCAATATGAAAAGGAAGAAGGATCGCTTTCTCCTACCCAATCTGATATGGAAACGAGAACTGAGCCAATCTACAACCAACTTAATGTCATTTCCAGCAAAGATGATAATGCACGTTATGAGGAAATGTACAGCAAATACATAGATATATGA

Protein sequence

MTIPKTLRWEEITHNSIWKLQEVTAPAKRISTEASIIDFPDGNVEIQFNSEARYPKIREIMSSHPSMSSNARTVNSFPESFRRFESMRAAVEFTHPVPNIQYEKEEGSLSPTQSDMETRTEPIYNQLNVISSKDDNARYEEMYSKYIDI*
Homology
[Close]
BLAST of MELO3C013447 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-41
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1 

Query: 1   MTIPKTLRWEEITHNSIWKLQEVTAPAKRISTEASIIDFPDGNVEIQFNSEARYPKIREI 60
           MTIP+TL W+E+T N IW+LQE TAP KR S EASI +FPDGNVE+QF ++  YP+I EI
Sbjct: 218 MTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEI 277

Query: 61  MSSHPSMSSNARTVNSFPESFRRFESMRAAVEFTHPVPNIQYEKEEGSLSPTQSDMETRT 120
           MSS PS  S  R    + ++ RR ES+R +V+FT  +PN+ YE+E+GSLSPTQ DME R+
Sbjct: 278 MSSRPSTFS-IRLEVPYKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRS 337

Query: 121 EPIYNQLNVISSKDDNARYEEMYSKYID 149
           EP +NQ+NVIS  DD  R+ E Y KY++
Sbjct: 338 EPAFNQINVIS--DDRERFREHYIKYVE 362

[Close]
BLAST of MELO3C013447 vs. TrEMBL
Match: M1B5X5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014583 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-06
Identity = 41/137 (29.93%), Postives = 64/137 (46.72%), Query Frame = 1 

Query: 3   IPKTLRWEEITHNSIWKLQEVTAPAKRISTEASI---IDFPDGNVEIQF-NSEARYPKIR 62
           +P+T++W++I  N+ W  + +T P    S  + I   I FPDG++E++F ++ AR     
Sbjct: 32  VPRTIQWKDILSNNDWHFENITPPFASHSERSQIERVIQFPDGSIELKFLDNPARRSSSN 91

Query: 63  EIMSSHPSMSSNARTVNSFPESFRRFESMR--------------AAVEFTHPVPNIQYEK 122
              S  PS S  +R V   P S +  E                   V+F+  +P I Y+ 
Sbjct: 92  RRSSWSPSTSGPSRPVPRPPSSSKTLEEADDEIISVADNIKGKVTGVDFSGDIPKIFYQD 151

[Close]
BLAST of MELO3C013447 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1 

Query: 1   MTIPKTLRWEEITHNSIWKLQEVTAPAKRISTEASIIDFPDGNVEIQFNSEARYPKIREI 60
           MTIP+TL W+E+T N IW+LQE TAP KR S EASI +FPDGNVE+QF ++  YP+I EI
Sbjct: 218 MTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEI 277

Query: 61  MSSHPSMSSNARTVNSFPESFRRFESMRAAVEFTHPVPNIQYEKEEGSLSPTQSDMETRT 120
           MSS PS  S  R    + ++ RR ES+R +V+FT  +PN+ YE+E+GSLSPTQ DME R+
Sbjct: 278 MSSRPSTFS-IRLEVPYKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRS 337

Query: 121 EPIYNQLNVISSKDDNARYEEMYSKYID 149
           EP +NQ+NVIS  DD  R+ E Y KY++
Sbjct: 338 EPAFNQINVIS--DDRERFREHYIKYVE 362

The following BLAST results are available for this feature:
BLAST of MELO3C013447 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M024_CUCSA9.8e-4157.43Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1[more]
M1B5X5_SOLTU7.9e-0629.93Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014583 PE=4 SV=1[more]
BLAST of MELO3C013447 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210425|gb|KGN65521.1|1.4e-4057.43hypothetical protein Csa_1G434190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU59193melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013447T1MELO3C013447T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59193MU59193transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013447Cucurbita moschata (Rifu)cmomeB086
MELO3C013447Cucurbita moschata (Rifu)cmomeB453
MELO3C013447Cucurbita moschata (Rifu)cmomeB503
MELO3C013447Cucurbita moschata (Rifu)cmomeB552
MELO3C013447Wild cucumber (PI 183967)cpimeB102
MELO3C013447Wild cucumber (PI 183967)cpimeB539
MELO3C013447Cucumber (Chinese Long) v2cumeB102
MELO3C013447Cucumber (Chinese Long) v2cumeB531
MELO3C013447Watermelon (Charleston Gray)mewcgB190
MELO3C013447Watermelon (Charleston Gray)mewcgB196
MELO3C013447Watermelon (97103) v1mewmB239
MELO3C013447Watermelon (97103) v1mewmB252
MELO3C013447Cucurbita pepo (Zucchini)cpemeB224
MELO3C013447Cucurbita pepo (Zucchini)cpemeB272
MELO3C013447Cucurbita pepo (Zucchini)cpemeB605
MELO3C013447Cucurbita pepo (Zucchini)cpemeB684
MELO3C013447Cucurbita pepo (Zucchini)cpemeB746
MELO3C013447Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C013447Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C013447Cucumber (Gy14) v2cgybmeB088
MELO3C013447Cucumber (Gy14) v2cgybmeB469
MELO3C013447Silver-seed gourdcarmeB0180
MELO3C013447Silver-seed gourdcarmeB0321
MELO3C013447Silver-seed gourdcarmeB0880
MELO3C013447Silver-seed gourdcarmeB0952
MELO3C013447Cucumber (Chinese Long) v3cucmeB106
MELO3C013447Cucumber (Chinese Long) v3cucmeB549
MELO3C013447Watermelon (97103) v2mewmbB176
MELO3C013447Watermelon (97103) v2mewmbB179
MELO3C013447Wax gourdmewgoB223
MELO3C013447Wax gourdmewgoB231
MELO3C013447Melon (DHL92) v3.5.1memeB042
MELO3C013447Cucumber (Gy14) v1cgymeB151
MELO3C013447Cucumber (Gy14) v1cgymeB612
MELO3C013447Cucurbita maxima (Rimu)cmameB093
MELO3C013447Cucurbita maxima (Rimu)cmameB462
MELO3C013447Cucurbita maxima (Rimu)cmameB563