MELO3C013431 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013431
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTBC1 domain family member 2A
Locationchr1 : 16955875 .. 16956544 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAATCAAGATTCTCCGGTCTCTCACTTTCAACGCTACCCCAGAATCAAAACCGCACATCCAGATCTCGATTACGCCTCCGTCGTTGCCTTCCTCAGATCTCAAGCACAAGAAATCGGTCTCCATACGCAGGTACTCGAGTTCGGTCTCAAGCTCATATTCCAATTCTAAGGCCGAGTATCCATGCGAGAAGGGAAAATATTACAGTTAAGTTTCAAGATCTATATGGGTTTACAGTGGAAGGCAATGTGGACGATGTTAATATATTGAATGAAGTTGGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCTTTGGAGGCTAGCAAAGGCGCTAATTGGTACTTAGAACCCTCTGTTTCTGAAGGGATCGCTCTCAAATTCTCCCTCAAACTATCAACGCTTGCTAATGCTATCACTTTGAAGAAGTTGATTAGGAAAGGTATCCCACCTGTTCTTCGTCCCAAGGTTTGGTTCTCCTTATCTGGAGCTGCCAAGAAGAAATCCACTGTTCGTGATAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGTATGTTCTTTTTCAATGATCCTTGATTTTGGATCACTATGCACTTTGCAACTTCAATTCGGTTCTTCCTTTTAG

mRNA sequence

ATGAATTCAATCAAGATTCTCCGGTCTCTCACTTTCAACGCTACCCCAGAATCAAAACCGCACATCCAGATCTCGATTACGCCTCCGTCGTTGCCTTCCTCAGATCTCAAGCACAAGAAATCGGTCTCCATACGCAGGCCGAGTATCCATGCGAGAAGGGAAAATATTACAGTTAAGTTTCAAGATCTATATGGGTTTACAGTGGAAGGCAATGTGGACGATGTTAATATATTGAATGAAGTTGGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCTTTGGAGGCTAGCAAAGGCGCTAATTGGTACTTAGAACCCTCTGTTTCTGAAGGGATCGCTCTCAAATTCTCCCTCAAACTATCAACGCTTGCTAATGCTATCACTTTGAAGAAGTTGATTAGGAAAGGTATCCCACCTGTTCTTCGTCCCAAGGTTTGGTTCTCCTTATCTGGAGCTGCCAAGAAGAAATCCACTGTTCGTGATAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGTATGTTCTTTTTCAATGATCCTTGATTTTGGATCACTATGCACTTTGCAACTTCAATTCGGTTCTTCCTTTTAG

Coding sequence (CDS)

ATGAATTCAATCAAGATTCTCCGGTCTCTCACTTTCAACGCTACCCCAGAATCAAAACCGCACATCCAGATCTCGATTACGCCTCCGTCGTTGCCTTCCTCAGATCTCAAGCACAAGAAATCGGTCTCCATACGCAGGCCGAGTATCCATGCGAGAAGGGAAAATATTACAGTTAAGTTTCAAGATCTATATGGGTTTACAGTGGAAGGCAATGTGGACGATGTTAATATATTGAATGAAGTTGGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCTTTGGAGGCTAGCAAAGGCGCTAATTGGTACTTAGAACCCTCTGTTTCTGAAGGGATCGCTCTCAAATTCTCCCTCAAACTATCAACGCTTGCTAATGCTATCACTTTGAAGAAGTTGATTAGGAAAGGTATCCCACCTGTTCTTCGTCCCAAGGTTTGGTTCTCCTTATCTGGAGCTGCCAAGAAGAAATCCACTGTTCGTGATAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGTATGTTCTTTTTCAATGATCCTTGATTTTGGATCACTATGCACTTTGCAACTTCAATTCGGTTCTTCCTTTTAG

Protein sequence

MNSIKILRSLTFNATPESKPHIQISITPPSLPSSDLKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWALEASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVRDSYYNDLTKAVEGKVTPATRQIDHVCSFSMILDFGSLCTLQLQFGSSF*
Homology
[Close]
BLAST of MELO3C013431 vs. TrEMBL
Match: A0A0H4TH70_MOMCH (TBC1 domain family member 2A OS=Momordica charantia PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.3e-70
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR NITVKFQDLYGFTVEGNVDDVN+LNEV EKVR+QGRVWWAL
Sbjct: 12  LELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRKQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYLEPSVSEGIALK SLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLEPSVSEGIALKSSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV DSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. TrEMBL
Match: A0A0A0LQ82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406820 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.1e-69
Identity = 135/150 (90.00%), Postives = 140/150 (93.33%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR NITVKFQDLYGFTVEGNVDDVN+LNEV EKVRQQGRVWWAL
Sbjct: 12  LELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYL+PSVSEGIALK SLKLSTLANAITLKKLI KGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLQPSVSEGIALKSSLKLSTLANAITLKKLISKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV DSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. TrEMBL
Match: W9SM68_9ROSA (TBC1 domain family member 2A OS=Morus notabilis GN=L484_020059 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.9e-67
Identity = 128/150 (85.33%), Postives = 139/150 (92.67%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR N+TVKFQDLYGFTVEGNVDDVN+LNEV EKVR+QGRVWWAL
Sbjct: 12  LEFQSQIPILRPSIHARRANLTVKFQDLYGFTVEGNVDDVNVLNEVREKVRKQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EA+KGANWYLEPS+SEGIALK SLK STLANAITLK+LIR GIPP+LRPKVWFSLSGAAK
Sbjct: 72  EANKGANWYLEPSISEGIALKSSLKFSTLANAITLKRLIRNGIPPLLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV +SYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPESYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. TrEMBL
Match: A0A067K403_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13790 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +    I RPSIH+RR NITVKFQDLYGFTVEGNVDDVNILNEV EKVRQQGRVWWAL
Sbjct: 12  LEFQSHFPILRPSIHSRRANITVKFQDLYGFTVEGNVDDVNILNEVREKVRQQGRVWWAL 71

Query: 96  EASKGANWYLEP---SVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSG 155
           EASKGANWYL+P   S++EGIALK SLKLSTLANAITLK+LIRKGIPPVLRPKVWFSLSG
Sbjct: 72  EASKGANWYLQPQITSIAEGIALKSSLKLSTLANAITLKRLIRKGIPPVLRPKVWFSLSG 131

Query: 156 AAKKKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           AAKKKSTV +SYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 AAKKKSTVPESYYNDLTKAVEGKVTPATRQIDH 164

[Close]
BLAST of MELO3C013431 vs. TrEMBL
Match: V4UF70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015500mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.3e-66
Identity = 130/153 (84.97%), Postives = 140/153 (91.50%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  +   RPSIHARR NITVKFQDLYGFTVEGNVDDVN+LNEV EKVR+QGRVWWAL
Sbjct: 12  LELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWAL 71

Query: 96  EASKGANWYLEP---SVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSG 155
           EASKGANWYL+P   S+SEGIALK SLKLS+LANAITLKKLIRKGIPPVLRPKVWFSLSG
Sbjct: 72  EASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSG 131

Query: 156 AAKKKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           AAKKKSTV +SYYNDLTKAVEGKVTPAT+QIDH
Sbjct: 132 AAKKKSTVPESYYNDLTKAVEGKVTPATKQIDH 164

[Close]
BLAST of MELO3C013431 vs. TAIR10
Match: AT3G07890.1 (AT3G07890.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-66
Identity = 124/150 (82.67%), Postives = 131/150 (87.33%), Query Frame = 1 

Query: 39  KKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWALEAS 98
           +  + I RPSIHARR NI VKFQDLYGFTVEGNVDDVN+LNEV EKVR QGRVWWALEAS
Sbjct: 15  QSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREKVRNQGRVWWALEAS 74

Query: 99  KGANWYLEPSV---SEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 158
           KGANWYL+P +    +GIALK SLKLSTL NAITLK+LIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 75  KGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPVLRPKVWFSLSGAAK 134

Query: 159 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV +SYY+DLTKAVEG VTPATRQIDH
Sbjct: 135 KKSTVPESYYSDLTKAVEGMVTPATRQIDH 164

[Close]
BLAST of MELO3C013431 vs. NCBI nr
Match: gi|659094557|ref|XP_008448127.1| (PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.8e-73
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           ++ +  + I RPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL
Sbjct: 167 VRSQAHIPILRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 226

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 227 EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 286

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTVRDSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 287 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 316

[Close]
BLAST of MELO3C013431 vs. NCBI nr
Match: gi|659111932|ref|XP_008455981.1| (PREDICTED: small G protein signaling modulator 3 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 3.1e-70
Identity = 138/150 (92.00%), Postives = 141/150 (94.00%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR NITVKFQDLYGFTVEGNVDDVNILNEV EKVRQQGRVWWAL
Sbjct: 12  LELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNILNEVREKVRQQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYLEPSVSEGIALK SLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLEPSVSEGIALKSSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV DSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. NCBI nr
Match: gi|874969616|gb|AKQ06194.1| (TBC1 domain family member 2A [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR NITVKFQDLYGFTVEGNVDDVN+LNEV EKVR+QGRVWWAL
Sbjct: 12  LELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRKQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYLEPSVSEGIALK SLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLEPSVSEGIALKSSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV DSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. NCBI nr
Match: gi|449441672|ref|XP_004138606.1| (PREDICTED: growth hormone-regulated TBC protein 1 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-69
Identity = 135/150 (90.00%), Postives = 140/150 (93.33%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR NITVKFQDLYGFTVEGNVDDVN+LNEV EKVRQQGRVWWAL
Sbjct: 12  LELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYL+PSVSEGIALK SLKLSTLANAITLKKLI KGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLQPSVSEGIALKSSLKLSTLANAITLKKLISKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDH 186
           KKSTV DSYYNDLTKAVEGKVTPATRQIDH
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDH 161

[Close]
BLAST of MELO3C013431 vs. NCBI nr
Match: gi|1009182912|ref|XP_015872969.1| (PREDICTED: uncharacterized protein LOC107410075, partial [Ziziphus jujuba])

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-68
Identity = 134/166 (80.72%), Postives = 145/166 (87.35%), Query Frame = 1 

Query: 36  LKHKKSVSIRRPSIHARRENITVKFQDLYGFTVEGNVDDVNILNEVGEKVRQQGRVWWAL 95
           L+ +  + I RPSIHARR N+TVKFQDLYGFTVEGNVDDVN+LNEV EKVR+QGRVWWAL
Sbjct: 12  LEFQSQIPILRPSIHARRANLTVKFQDLYGFTVEGNVDDVNVLNEVREKVRKQGRVWWAL 71

Query: 96  EASKGANWYLEPSVSEGIALKFSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK 155
           EASKGANWYL+PS++EGIALK SLK S+LANAITLK+LIRKGIPPVLRPKVWFSLSGAAK
Sbjct: 72  EASKGANWYLQPSIAEGIALKSSLKFSSLANAITLKRLIRKGIPPVLRPKVWFSLSGAAK 131

Query: 156 KKSTVRDSYYNDLTKAVEGKVTPATRQIDHVCSFSMILDFGSLCTL 202
           KKSTV DSYYNDLTKAVEGKVTPATRQIDHV        F S C L
Sbjct: 132 KKSTVPDSYYNDLTKAVEGKVTPATRQIDHVSPM-----FSSWCIL 172

The following BLAST results are available for this feature:
BLAST of MELO3C013431 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0H4TH70_MOMCH8.3e-7090.67TBC1 domain family member 2A OS=Momordica charantia PE=2 SV=1[more]
A0A0A0LQ82_CUCSA3.1e-6990.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406820 PE=4 SV=1[more]
W9SM68_9ROSA2.9e-6785.33TBC1 domain family member 2A OS=Morus notabilis GN=L484_020059 PE=4 SV=1[more]
A0A067K403_JATCU1.5e-6686.27Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13790 PE=4 SV=1[more]
V4UF70_9ROSI4.3e-6684.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015500mg PE=4 SV=1[more]
BLAST of MELO3C013431 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07890.12.2e-6682.67 Ypt/Rab-GAP domain of gyp1p superfamily protein[more]
BLAST of MELO3C013431 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094557|ref|XP_008448127.1|1.8e-7394.00PREDICTED: uncharacterized protein LOC103490416 [Cucumis melo][more]
gi|659111932|ref|XP_008455981.1|3.1e-7092.00PREDICTED: small G protein signaling modulator 3 [Cucumis melo][more]
gi|874969616|gb|AKQ06194.1|1.2e-6990.67TBC1 domain family member 2A [Momordica charantia][more]
gi|449441672|ref|XP_004138606.1|4.5e-6990.00PREDICTED: growth hormone-regulated TBC protein 1 [Cucumis sativus][more]
gi|1009182912|ref|XP_015872969.1|2.2e-6880.72PREDICTED: uncharacterized protein LOC107410075, partial [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030048 actin filament-based movement
biological_process GO:0051645 Golgi localization
biological_process GO:0008152 metabolic process
biological_process GO:0051646 mitochondrion localization
biological_process GO:0060151 peroxisome localization
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013431T1MELO3C013431T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainunknownSSF47923Ypt/Rab-GAP domain of gyp1pcoord: 129..184
score: 1.
NoneNo IPR availableGENE3DG3DSA:1.10.8.270coord: 130..170
score: 0
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 129..185
score: 2.3E-34coord: 44..109
score: 2.3
NoneNo IPR availablePANTHERPTHR22957:SF327SUBFAMILY NOT NAMEDcoord: 129..185
score: 2.3E-34coord: 44..109
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013431Cucumber (Gy14) v2cgybmeB088
MELO3C013431Cucumber (Gy14) v2cgybmeB092
MELO3C013431Cucumber (Gy14) v2cgybmeB469
MELO3C013431Silver-seed gourdcarmeB0180
MELO3C013431Silver-seed gourdcarmeB0321
MELO3C013431Silver-seed gourdcarmeB0952
MELO3C013431Cucumber (Chinese Long) v3cucmeB106
MELO3C013431Cucumber (Chinese Long) v3cucmeB110
MELO3C013431Cucumber (Chinese Long) v3cucmeB549
MELO3C013431Watermelon (97103) v2mewmbB176
MELO3C013431Watermelon (97103) v2mewmbB179
MELO3C013431Watermelon (97103) v2mewmbB207
MELO3C013431Wax gourdmewgoB213
MELO3C013431Wax gourdmewgoB223
MELO3C013431Wax gourdmewgoB226
MELO3C013431Wax gourdmewgoB229
MELO3C013431Wax gourdmewgoB231
MELO3C013431Melon (DHL92) v3.5.1memeB042
MELO3C013431Melon (DHL92) v3.5.1memeB080
MELO3C013431Cucumber (Gy14) v1cgymeB151
MELO3C013431Cucumber (Gy14) v1cgymeB274
MELO3C013431Cucumber (Gy14) v1cgymeB612
MELO3C013431Cucurbita maxima (Rimu)cmameB093
MELO3C013431Cucurbita maxima (Rimu)cmameB149
MELO3C013431Cucurbita maxima (Rimu)cmameB462
MELO3C013431Cucurbita maxima (Rimu)cmameB512
MELO3C013431Cucurbita maxima (Rimu)cmameB563
MELO3C013431Cucurbita moschata (Rifu)cmomeB086
MELO3C013431Cucurbita moschata (Rifu)cmomeB139
MELO3C013431Cucurbita moschata (Rifu)cmomeB453
MELO3C013431Cucurbita moschata (Rifu)cmomeB503
MELO3C013431Cucurbita moschata (Rifu)cmomeB552
MELO3C013431Wild cucumber (PI 183967)cpimeB102
MELO3C013431Wild cucumber (PI 183967)cpimeB106
MELO3C013431Wild cucumber (PI 183967)cpimeB539
MELO3C013431Cucumber (Chinese Long) v2cumeB102
MELO3C013431Cucumber (Chinese Long) v2cumeB107
MELO3C013431Cucumber (Chinese Long) v2cumeB531
MELO3C013431Watermelon (Charleston Gray)mewcgB190
MELO3C013431Watermelon (Charleston Gray)mewcgB196
MELO3C013431Watermelon (Charleston Gray)mewcgB224
MELO3C013431Watermelon (97103) v1mewmB219
MELO3C013431Watermelon (97103) v1mewmB239
MELO3C013431Watermelon (97103) v1mewmB252
MELO3C013431Cucurbita pepo (Zucchini)cpemeB224
MELO3C013431Cucurbita pepo (Zucchini)cpemeB272
MELO3C013431Cucurbita pepo (Zucchini)cpemeB605
MELO3C013431Cucurbita pepo (Zucchini)cpemeB684
MELO3C013431Cucurbita pepo (Zucchini)cpemeB746
MELO3C013431Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C013431Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C013431Bottle gourd (USVL1VR-Ls)lsimeB467