MELO3C013381 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013381
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionOSBP(oxysterol binding protein)-related protein 4B
Locationchr1 : 16272884 .. 16273243 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCAATCTAGAACGGTCTTCCATGACGGTTCCCAAACTTCTAGACTGGAGCCAGCTAACTCGCAATCCAGTTTGGACTATCGAGCACGTAACTACTCTTAAAACAAGGCAAAGCAGCACGGGTCAGATAACCGAATATGATGATGGGCATGTTGAAGTTCAATTTCAAGAAGAACCCCATCATCCTCCAATCAGAGAAATATATAATGGACGGTCCAGTGTTTCAGAGTATCAACCAACCACTAGGGAAAGACCAATTCCTAGGTCTAATTCAATGAGGATGTCAGTGGATTTTGAACAATTCATTCCAGACGTTCAGTATGAGAAGTCTGAGGGATCTTTGTCACCCACTTAA

mRNA sequence

ATGGAAGTCAATCTAGAACGGTCTTCCATGACGGTTCCCAAACTTCTAGACTGGAGCCAGCTAACTCGCAATCCAGTTTGGACTATCGAGCACGTAACTACTCTTAAAACAAGGCAAAGCAGCACGGGTCAGATAACCGAATATGATGATGGGCATGTTGAAGTTCAATTTCAAGAAGAACCCCATCATCCTCCAATCAGAGAAATATATAATGGACGGTCCAGTGTTTCAGAGTATCAACCAACCACTAGGGAAAGACCAATTCCTAGGTCTAATTCAATGAGGATGTCAGTGGATTTTGAACAATTCATTCCAGACGTTCAGTATGAGAAGTCTGAGGGATCTTTGTCACCCACTTAA

Coding sequence (CDS)

ATGGAAGTCAATCTAGAACGGTCTTCCATGACGGTTCCCAAACTTCTAGACTGGAGCCAGCTAACTCGCAATCCAGTTTGGACTATCGAGCACGTAACTACTCTTAAAACAAGGCAAAGCAGCACGGGTCAGATAACCGAATATGATGATGGGCATGTTGAAGTTCAATTTCAAGAAGAACCCCATCATCCTCCAATCAGAGAAATATATAATGGACGGTCCAGTGTTTCAGAGTATCAACCAACCACTAGGGAAAGACCAATTCCTAGGTCTAATTCAATGAGGATGTCAGTGGATTTTGAACAATTCATTCCAGACGTTCAGTATGAGAAGTCTGAGGGATCTTTGTCACCCACTTAA

Protein sequence

MEVNLERSSMTVPKLLDWSQLTRNPVWTIEHVTTLKTRQSSTGQITEYDDGHVEVQFQEEPHHPPIREIYNGRSSVSEYQPTTRERPIPRSNSMRMSVDFEQFIPDVQYEKSEGSLSPT*
Homology
[Close]
BLAST of MELO3C013381 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-20
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 1   MEVNLERSSMTVPKLLDWSQLTRNPVWTIEHVTTLKTRQSSTGQITEYDDGHVEVQFQEE 60
           MEVN E+SSMT+P+ L W +LT+N +W ++  T    R S+   ITE+ DG+VEVQF  +
Sbjct: 209 MEVNTEKSSMTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTND 268

Query: 61  PHHPPIREIYNGRSSVSE------YQPTTRERPIPRSNSMRMSVDFEQFIPDVQYEKSEG 120
             +P I EI + R S         Y+ T R     RS S+R SVDF + IP+V YE+ +G
Sbjct: 269 ISYPRISEIMSSRPSTFSIRLEVPYKDTLR-----RSESIRTSVDFTRSIPNVHYEREDG 328

[Close]
BLAST of MELO3C013381 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-20
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 1   MEVNLERSSMTVPKLLDWSQLTRNPVWTIEHVTTLKTRQSSTGQITEYDDGHVEVQFQEE 60
           MEVN E+SSMT+P+ L W +LT+N +W ++  T    R S+   ITE+ DG+VEVQF  +
Sbjct: 209 MEVNTEKSSMTIPRTLHWKELTKNLIWRLQEETAPIKRSSNEASITEFPDGNVEVQFTND 268

Query: 61  PHHPPIREIYNGRSSVSE------YQPTTRERPIPRSNSMRMSVDFEQFIPDVQYEKSEG 120
             +P I EI + R S         Y+ T R     RS S+R SVDF + IP+V YE+ +G
Sbjct: 269 ISYPRISEIMSSRPSTFSIRLEVPYKDTLR-----RSESIRTSVDFTRSIPNVHYEREDG 328

The following BLAST results are available for this feature:
BLAST of MELO3C013381 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M024_CUCSA3.4e-2045.60Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1[more]
BLAST of MELO3C013381 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210425|gb|KGN65521.1|4.9e-2045.60hypothetical protein Csa_1G434190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013381T1MELO3C013381T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013381Watermelon (97103) v2mewmbB179
MELO3C013381Wax gourdmewgoB213
MELO3C013381Wax gourdmewgoB231
MELO3C013381Melon (DHL92) v3.5.1memeB038
MELO3C013381Cucumber (Gy14) v1cgymeB302
MELO3C013381Cucumber (Gy14) v1cgymeB622
MELO3C013381Cucurbita maxima (Rimu)cmameB092
MELO3C013381Cucurbita maxima (Rimu)cmameB462
MELO3C013381Cucurbita maxima (Rimu)cmameB510
MELO3C013381Cucurbita maxima (Rimu)cmameB563
MELO3C013381Cucurbita moschata (Rifu)cmomeB091
MELO3C013381Cucurbita moschata (Rifu)cmomeB453
MELO3C013381Cucurbita moschata (Rifu)cmomeB503
MELO3C013381Cucurbita moschata (Rifu)cmomeB552
MELO3C013381Wild cucumber (PI 183967)cpimeB102
MELO3C013381Wild cucumber (PI 183967)cpimeB539
MELO3C013381Cucumber (Chinese Long) v2cumeB531
MELO3C013381Watermelon (Charleston Gray)mewcgB196
MELO3C013381Watermelon (97103) v1mewmB239
MELO3C013381Cucurbita pepo (Zucchini)cpemeB224
MELO3C013381Cucurbita pepo (Zucchini)cpemeB272
MELO3C013381Cucurbita pepo (Zucchini)cpemeB610
MELO3C013381Cucurbita pepo (Zucchini)cpemeB684
MELO3C013381Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C013381Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C013381Cucumber (Gy14) v2cgybmeB088
MELO3C013381Cucumber (Gy14) v2cgybmeB092
MELO3C013381Cucumber (Gy14) v2cgybmeB469
MELO3C013381Silver-seed gourdcarmeB0321
MELO3C013381Silver-seed gourdcarmeB0952
MELO3C013381Silver-seed gourdcarmeB0988
MELO3C013381Cucumber (Chinese Long) v3cucmeB106
MELO3C013381Cucumber (Chinese Long) v3cucmeB549