MELO3C013340 (gene) Melon (DHL92) v3.5.1

NameMELO3C013340
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-binding protein 12
Locationchr1 : 15902593 .. 15903285 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGTACACGAGGTGGCGGCAAAAGAACGGAGGATGAATGACCTAGGTGCGGTTCAGATACCGCTGAACCGGCCGACTCAGAAAGACCGGTCAAATGCGCTGAAAGTTCGTAACGCTGATTCTGCGATGGACGGGCTGAACGTCGTTGGGCCTGGTTTAATTGGGCCTGCTGTTGATTCGAAAGAATTAAGTGGGTCTACGGTGGCTGGGCGGAGGGACGATGGGCTGGGTTCTTTTGGGCCGCGAATTGAATCTGCAAATTTGTTGAATCATGGAGGAGAAGAGTCGAACACAGCAGCTGGTTGCATTTCTAAAAATCAAAGTGCAAATGTTAATAATTTTGTTAAGAATGATCTTAACAAACAGTCGACTGATTCTAAATCCACATGGGCTTCGCTATTTGGGACATCTTCTGAAGGATCCCTTCTATATACTCTGCCCAAAGCTATTGGGGATAAAATTGTTGTCATCCCACTAGAAGAGGTTATCGATCAAGGAATTAGAGTGTGGGAAAATTCCTTGGTAGGTCAACTGATAGATGCCAAGTTACCTTATGCCGTTATTCAGTGTCTGGTTGAGAAAATTTGGGGGAAGATTGAAATGTCCATTATCACTATTTTGGAAAACGATCTCATATGCTTTCAATTTAGACGGCCAAAATCAGTGGAGTGGATTCTATCGCGTGGACCATGA

mRNA sequence

AAGGTACACGAGGTGGCGGCAAAAGAACGGAGGATGAATGACCTAGGTGCGGTTCAGATACCGCTGAACCGGCCGACTCAGAAAGACCGGTCAAATGCGCTGAAAGTTCGTAACGCTGATTCTGCGATGGACGGGCTGAACGTCGTTGGGCCTGGTTTAATTGGGCCTGCTGTTGATTCGAAAGAATTAAGTGGGTCTACGGTGGCTGGGCGGAGGGACGATGGGCTGGGTTCTTTTGGGCCGCGAATTGAATCTGCAAATTTGTTGAATCATGGAGGAGAAGAGTCGAACACAGCAGCTGGTTGCATTTCTAAAAATCAAAGTGCAAATGTTAATAATTTTGTTAAGAATGATCTTAACAAACAGTCGACTGATTCTAAATCCACATGGGCTTCGCTATTTGGGACATCTTCTGAAGGATCCCTTCTATATACTCTGCCCAAAGCTATTGGGGATAAAATTGTTGTCATCCCACTAGAAGAGGTTATCGATCAAGGAATTAGAGTGTGGGAAAATTCCTTGGTAGGTCAACTGATAGATGCCAAGTTACCTTATGCCGTTATTCAGTGTCTGGTTGAGAAAATTTGGGGGAAGATTGAAATGTCCATTATCACTATTTTGGAAAACGATCTCATATGCTTTCAATTTAGACGGCCAAAATCAGTGGAGTGGATTCTATCGCGTGGACCATGA

Coding sequence (CDS)

AAGGTACACGAGGTGGCGGCAAAAGAACGGAGGATGAATGACCTAGGTGCGGTTCAGATACCGCTGAACCGGCCGACTCAGAAAGACCGGTCAAATGCGCTGAAAGTTCGTAACGCTGATTCTGCGATGGACGGGCTGAACGTCGTTGGGCCTGGTTTAATTGGGCCTGCTGTTGATTCGAAAGAATTAAGTGGGTCTACGGTGGCTGGGCGGAGGGACGATGGGCTGGGTTCTTTTGGGCCGCGAATTGAATCTGCAAATTTGTTGAATCATGGAGGAGAAGAGTCGAACACAGCAGCTGGTTGCATTTCTAAAAATCAAAGTGCAAATGTTAATAATTTTGTTAAGAATGATCTTAACAAACAGTCGACTGATTCTAAATCCACATGGGCTTCGCTATTTGGGACATCTTCTGAAGGATCCCTTCTATATACTCTGCCCAAAGCTATTGGGGATAAAATTGTTGTCATCCCACTAGAAGAGGTTATCGATCAAGGAATTAGAGTGTGGGAAAATTCCTTGGTAGGTCAACTGATAGATGCCAAGTTACCTTATGCCGTTATTCAGTGTCTGGTTGAGAAAATTTGGGGGAAGATTGAAATGTCCATTATCACTATTTTGGAAAACGATCTCATATGCTTTCAATTTAGACGGCCAAAATCAGTGGAGTGGATTCTATCGCGTGGACCATGA

Protein sequence

KVHEVAAKERRMNDLGAVQIPLNRPTQKDRSNALKVRNADSAMDGLNVVGPGLIGPAVDSKELSGSTVAGRRDDGLGSFGPRIESANLLNHGGEESNTAAGCISKNQSANVNNFVKNDLNKQSTDSKSTWASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVGQLIDAKLPYAVIQCLVEKIWGKIEMSIITILENDLICFQFRRPKSVEWILSRGP*
BLAST of MELO3C013340 vs. TrEMBL
Match: U5G389_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00560g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-06
Identity = 27/96 (28.12%), Postives = 49/96 (51.04%), Query Frame = 1

Query: 135 GTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVGQLIDAKLPYAVIQCLVEK 194
           G++S  +L +  P     +++V P  +V + G  +W+++LVG  +  KLPY V+  + ++
Sbjct: 77  GSNSVCNLHFASPAMTNGRLIVAPPLDVFEDGCELWKSTLVGHFVGQKLPYPVVNSIAKR 136

Query: 195 IWGKIEMSIITILENDLICFQFRRPKSVEWILSRGP 231
           IWG   +S +   +N    F F        +L R P
Sbjct: 137 IWGSYGLSEVLSSDNGFFLFTFDSVDHATNMLERAP 172

BLAST of MELO3C013340 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-70
Identity = 147/214 (68.69%), Postives = 160/214 (74.77%), Query Frame = 1

Query: 43  MDGLNVVGPGLIGPAVDSKELSGSTVAGRRDDGLGSFGP--------------------- 102
           MDGLNVVGP LIGP V+S+   GS  AGRRDDGLGSFGP                     
Sbjct: 1   MDGLNVVGPDLIGPDVESEGKRGSKEAGRRDDGLGSFGPRNETVIGRCGSSVCGQKLDDI 60

Query: 103 ----RIESANLLNHGGEE-SNTAAGCISKNQSANVNNFVKNDLNKQSTDSKSTWASLFGT 162
               RIE  +  N G +E SN ++GC+  NQ+ANV+N V+N +NKQ  DSKSTWASLFGT
Sbjct: 61  SSGSRIEFGDFFNSGEDEPSNVSSGCVLNNQNANVSNVVQNGINKQLIDSKSTWASLFGT 120

Query: 163 SSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVGQLIDAKLPYAVIQCLVEKIW 222
           SSE SLLYTLPK IGDKIVV P EEVIDQGI+VWENSLVGQLID+KLPY VIQ LVEKIW
Sbjct: 121 SSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVGQLIDSKLPYTVIQHLVEKIW 180

Query: 223 GKIEMSIITILENDLICFQFRRPKSVEWILSRGP 231
           GKIEM IITILENDLICFQFRR KSVEWILSRGP
Sbjct: 181 GKIEMPIITILENDLICFQFRRSKSVEWILSRGP 214

BLAST of MELO3C013340 vs. NCBI nr
Match: gi|659128572|ref|XP_008464269.1| (PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 135/242 (55.79%), Postives = 159/242 (65.70%), Query Frame = 1

Query: 1   KVHEVAAKERRMNDLGAVQIPLNRPTQKDRSNALKVRNADSAMDGLNVVGPGLIGPAVDS 60
           K+HE A +ER+  DLG++++PLNRP QK R   L+ R   SA+DG N +GP   G A   
Sbjct: 25  KIHEAAVRERKTTDLGSIRLPLNRPAQKVRPTGLRPRKVGSALDGQNEIGPREEGIAAGP 84

Query: 61  KELSGSTVAGRRDDGLGSFGPRIESANLLNHGGE------------ESNTAAGCISKNQS 120
           +   G    G +  G  S GP I    +   GG+            E + + G I K +S
Sbjct: 85  R---GLEFGGLKPAGESSNGPLIGFDQIRKSGGKDEPASGGLLFSTEKDISFGSIWKIRS 144

Query: 121 ANVNNFVKNDLNKQSTDSKSTWASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIR 180
            NV   V+N L+K +  S STWASLF TS+EGSL YT PKAIGDKIVV+P EEVI QGIR
Sbjct: 145 ENVPKVVENGLHKHTIGSNSTWASLFRTSTEGSLPYTPPKAIGDKIVVVPPEEVIVQGIR 204

Query: 181 VWENSLVGQLIDAKLPYAVIQCLVEKIWGKIEMSIITILENDLICFQFRRPKSVEWILSR 231
           VWENSLVG+LIDA LPY VI  LVEKIWGKIEM  ITILENDLICFQFR  KS+EWILSR
Sbjct: 205 VWENSLVGKLIDANLPYVVIHRLVEKIWGKIEMPTITILENDLICFQFRWAKSLEWILSR 263

BLAST of MELO3C013340 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.1e-55
Identity = 124/177 (70.06%), Postives = 137/177 (77.40%), Query Frame = 1

Query: 54  IGPAVDSKELSGSTVAGRRDDGLGSFGPRIESANLLNHGGEESNTAAGCISKNQSANVNN 113
           IGP V S  L GS   GR++DG  + GP+I++ANL+ H   + NT    + KN + NVNN
Sbjct: 169 IGPGVASINLRGS---GRKNDGCPN-GPQIDAANLVAHDDIQPNTDPAGVLKNPTTNVNN 228

Query: 114 FVKNDLNKQSTDSKSTWASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENS 173
           F  N         KSTWASLFGT++EGSL YTLPKAIGDKIVVIP EEVIDQGIRVWENS
Sbjct: 229 FAANV-------PKSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENS 288

Query: 174 LVGQLIDAKLPYAVIQCLVEKIWGKIEMSIITILENDLICFQFRRPKSVEWILSRGP 231
           LVGQLIDAKLPY+VIQ LVEKI GKIEM IITILENDLICFQFRR KSVEWILSRGP
Sbjct: 289 LVGQLIDAKLPYSVIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGP 334

BLAST of MELO3C013340 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 4.9e-08
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1

Query: 1   KVHEVAAKERRMNDLGAVQIPLNRPTQKDRSNALKVRNADSAMDGLNVVGPGLIGPAVDS 60
           K+HE AA ER+  DL AV++PLNRPTQK+RS      + +SA+ G++ + P L G  ++ 
Sbjct: 25  KIHEAAACERKTIDLDAVRLPLNRPTQKNRSAGF--TSVESAVSGMSSIEPKLSGLQIEG 84

Query: 61  KELSGSTVAGRRDDGLGSFGPRIESANLLN 91
            ++SGS   G + +     GPRIE+   LN
Sbjct: 85  GDVSGSDFGGLKAESFK--GPRIENMVKLN 110


HSP 2 Score: 93.2 bits (230), Expect = 6.4e-16
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1

Query: 68  VAGRRDDGLGSFGPRIESANLLNHGGE-----------ESNTAAGCISKNQSANVNNFVK 127
           ++G + DG  S GP      +   GG            +   + G ISKN S NV   V+
Sbjct: 77  ISGLKRDGQHSIGPLFGIEEIGKSGGSSELNSGRPVSTDQGISFGSISKNLSVNV---VE 136

Query: 128 NDLNKQSTDSKSTWASLFGTSSEGSLLYTLPKAIGDKIVVIPLEEVIDQGIRVWENSLVG 182
           N    ++T S STWASLFGTS +GSL YT PK IGD I+V+P EEVI Q IRVWENSL  
Sbjct: 137 N--GPKTTGSNSTWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLKA 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
U5G389_POPTR9.3e-0628.13Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00560g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659126448|ref|XP_008463187.1|1.5e-7068.69PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659128572|ref|XP_008464269.1|1.1e-6055.79PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|1.1e-5570.06PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|4.9e-0842.22PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013340T1MELO3C013340T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013340Cucumber (Gy14) v1cgymeB394
MELO3C013340Cucumber (Gy14) v1cgymeB603
MELO3C013340Cucurbita maxima (Rimu)cmameB092
MELO3C013340Cucurbita maxima (Rimu)cmameB462
MELO3C013340Cucurbita maxima (Rimu)cmameB510
MELO3C013340Cucurbita maxima (Rimu)cmameB565
MELO3C013340Cucurbita moschata (Rifu)cmomeB091
MELO3C013340Cucurbita moschata (Rifu)cmomeB453
MELO3C013340Cucurbita moschata (Rifu)cmomeB503
MELO3C013340Cucurbita moschata (Rifu)cmomeB554
MELO3C013340Wild cucumber (PI 183967)cpimeB102
MELO3C013340Wild cucumber (PI 183967)cpimeB539
MELO3C013340Cucumber (Chinese Long) v2cumeB104
MELO3C013340Cucumber (Chinese Long) v2cumeB531
MELO3C013340Watermelon (Charleston Gray)mewcgB196
MELO3C013340Watermelon (Charleston Gray)mewcgB201
MELO3C013340Watermelon (97103) v1mewmB239
MELO3C013340Watermelon (97103) v1mewmB247
MELO3C013340Cucurbita pepo (Zucchini)cpemeB224
MELO3C013340Cucurbita pepo (Zucchini)cpemeB272
MELO3C013340Cucurbita pepo (Zucchini)cpemeB610
MELO3C013340Bottle gourd (USVL1VR-Ls)lsimeB064
MELO3C013340Bottle gourd (USVL1VR-Ls)lsimeB096
MELO3C013340Cucumber (Gy14) v2cgybmeB088
MELO3C013340Cucumber (Gy14) v2cgybmeB469
MELO3C013340Silver-seed gourdcarmeB0321
MELO3C013340Silver-seed gourdcarmeB0353
MELO3C013340Silver-seed gourdcarmeB0801
MELO3C013340Silver-seed gourdcarmeB0988
MELO3C013340Silver-seed gourdcarmeB1031
MELO3C013340Cucumber (Chinese Long) v3cucmeB106
MELO3C013340Cucumber (Chinese Long) v3cucmeB549
MELO3C013340Watermelon (97103) v2mewmbB179
MELO3C013340Watermelon (97103) v2mewmbB184
MELO3C013340Wax gourdmewgoB213
MELO3C013340Wax gourdmewgoB231
MELO3C013340Melon (DHL92) v3.5.1memeB038