MELO3C013301 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013301
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Locationchr1 : 15167914 .. 15168280 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTCTAGATAATGCTGGATGGTTAAGCTTCAAAAAATCTGGTGAGAAGTCGAATGTCAATGAAAATCCAAAAGTAAACGCTATGGATGACCTTGTTGAAAAGTGCAAAAATGAAGTCCAAGAGATAATGATGCCTATGGAAGCACTTTTTGAAGGTCTTTTTAAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGGAGGGTATGATGAAAGCAGACATTGTATATTCCATCAAGGAGTTGCAGGCCATGTTGTCCAACAGTGCCAAAAATTTAGATCCAAAGTACAACAACTTATGGATTCAAAGATACTCGCGATACATAGAGGACAAGGAAAAGACGAGATGA

mRNA sequence

ATGCAATCTCTAGATAATGCTGGATGGTTAAGCTTCAAAAAATCTGGTGAGAAGTCGAATGTCAATGAAAATCCAAAAGTAAACGCTATGGATGACCTTGTTGAAAAGTGCAAAAATGAAGTCCAAGAGATAATGATGCCTATGGAAGCACTTTTTGAAGGTCTTTTTAAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGGAGGTGCCAAAAATTTAGATCCAAAGTACAACAACTTATGGATTCAAAGATACTCGCGATACATAGAGGACAAGGAAAAGACGAGATGA

Coding sequence (CDS)

ATGCAATCTCTAGATAATGCTGGATGGTTAAGCTTCAAAAAATCTGGTGAGAAGTCGAATGTCAATGAAAATCCAAAAGTAAACGCTATGGATGACCTTGTTGAAAAGTGCAAAAATGAAGTCCAAGAGATAATGATGCCTATGGAAGCACTTTTTGAAGGTCTTTTTAAAGCAGGATATGTTAGTCAGGAATATCTAGACCCCAACATAAGATATGGAGGTGCCAAAAATTTAGATCCAAAGTACAACAACTTATGGATTCAAAGATACTCGCGATACATAGAGGACAAGGAAAAGACGAGATGA

Protein sequence

MQSLDNAGWLSFKKSGEKSNVNENPKVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGYVSQEYLDPNIRYGGAKNLDPKYNNLWIQRYSRYIEDKEKTR*
Homology
[Close]
BLAST of MELO3C013301 vs. NCBI nr
Match: gi|659129309|ref|XP_008464622.1| (PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-27
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 1   MQSLDNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFE 60
           +QSL NAGWLSFKKSGEK NVNENP       KVN +D LVEKCK+EV EI+MPMEALFE
Sbjct: 413 VQSLINAGWLSFKKSGEKPNVNENPLSDHENPKVNVVDSLVEKCKSEVHEIVMPMEALFE 472

Query: 61  GLFKAGYVSQEYLDPNIRYGGAKNLDPKYNNL 86
           GLF+AGYVS EYLDPNIRY G +  +PK+  L
Sbjct: 473 GLFEAGYVSHEYLDPNIRYEGNQRDNPKWKML 504

[Close]
BLAST of MELO3C013301 vs. NCBI nr
Match: gi|659125951|ref|XP_008462935.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.4e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 1   MQSLDNAGWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFE 60
           +QSL NAGWLSFKKSGEK NVNENP       KVNA+D LVEKCKNEV EI+MPMEALFE
Sbjct: 403 VQSLINAGWLSFKKSGEKPNVNENPLPDHENPKVNAVDSLVEKCKNEVHEIVMPMEALFE 462

Query: 61  GLFKAGYVSQ 64
           GLF+AGYV +
Sbjct: 463 GLFEAGYVEK 472

[Close]
BLAST of MELO3C013301 vs. NCBI nr
Match: gi|659072252|ref|XP_008464418.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103502308 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 8   GWLSFKKSGEKSNVNENP-------KVNAMDDLVEKCKNEVQEIMMPMEALFEGLFKAGY 67
           G +S KK GE  NVNENP       KVNA+D LVEKCKNEV EI+MPME LFEGLF+A Y
Sbjct: 297 GTISKKKEGEP-NVNENPLPDHENPKVNAVDGLVEKCKNEVHEIVMPMEELFEGLFEARY 356

Query: 68  VSQEYLDPNIRYGGAKNLDP-KYNNL 86
           VS EYLDPNIRY G +   P K+ +L
Sbjct: 357 VSHEYLDPNIRYEGIQVSSPFKFKDL 381

The following BLAST results are available for this feature:
BLAST of MELO3C013301 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129309|ref|XP_008464622.1|7.9e-2770.65PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo][more]
gi|659125951|ref|XP_008462935.1|9.4e-2075.71PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis me... [more]
gi|659072252|ref|XP_008464418.1|1.5e-1763.95PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103502308 [Cucumis me... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013301T1MELO3C013301T1mRNA