MELO3C013300 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013300
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-directed DNA polymerase, putative
Locationchr1 : 15166503 .. 15166961 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACAAGATAAGGACATGGATAAAATGAGACAAAAGATTAATAATCTTGGGGAACAAGTTTCAAAAATACTAGAACTGCTTTCAATGGGGAAAGGAAAAGTCGTTGTAGATACAACACAATCAAGCAATCTAGTTCAAGACACCGATGATCCCATTTATCCTCCAAGATTCACTCCATGCCACATGAATGTTCCGCAGTCTCAAAACACTCAACACTATGTTGCTACGAATCTGCTGTATGTTGTTCCACCTCTTGTTCTAGGTATAGAACATTTAGAAGCTCAAGCTAAAATTCAAGACATGGGACAAAACGAGAACACTTCGGCTAAGCAAAAGCTAGATGTTTTGGAAGAAAGGTTGCGAGCAATTGAAGGGACTGATGTTTATGGAAAATGCAACACAATTGTGCTTGGTGCCAAGCTTGAACATTCCAGCAAAGTTTTAAGTTCCTGA

mRNA sequence

ATGGAAGAACAAGATAAGGACATGGATAAAATGAGACAAAAGATTAATAATCTTGGGGAACAAGTTTCAAAAATACTAGAACTGCTTTCAATGGGGAAAGGAAAAGTCGTTGTAGATACAACACAATCAAGCAATCTAGTTCAAGACACCGATGATCCCATTTATCCTCCAAGATTCACTCCATGCCACATGAATGTTCCGCAGTCTCAAAACACTCAACACTATGTTGCTACGAATCTGCTGTATGTTGTTCCACCTCTTGTTCTAGGTATAGAACATTTAGAAGCTCAAGCTAAAATTCAAGACATGGGACAAAACGAGAACACTTCGGCTAAGCAAAAGCTAGATGTTTTGGAAGAAAGGTTGCGAGCAATTGAAGGGACTGATGTTTATGGAAAATGCAACACAATTGTGCTTGGTGCCAAGCTTGAACATTCCAGCAAAGTTTTAAGTTCCTGA

Coding sequence (CDS)

ATGGAAGAACAAGATAAGGACATGGATAAAATGAGACAAAAGATTAATAATCTTGGGGAACAAGTTTCAAAAATACTAGAACTGCTTTCAATGGGGAAAGGAAAAGTCGTTGTAGATACAACACAATCAAGCAATCTAGTTCAAGACACCGATGATCCCATTTATCCTCCAAGATTCACTCCATGCCACATGAATGTTCCGCAGTCTCAAAACACTCAACACTATGTTGCTACGAATCTGCTGTATGTTGTTCCACCTCTTGTTCTAGGTATAGAACATTTAGAAGCTCAAGCTAAAATTCAAGACATGGGACAAAACGAGAACACTTCGGCTAAGCAAAAGCTAGATGTTTTGGAAGAAAGGTTGCGAGCAATTGAAGGGACTGATGTTTATGGAAAATGCAACACAATTGTGCTTGGTGCCAAGCTTGAACATTCCAGCAAAGTTTTAAGTTCCTGA

Protein sequence

MEEQDKDMDKMRQKINNLGEQVSKILELLSMGKGKVVVDTTQSSNLVQDTDDPIYPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPLVLGIEHLEAQAKIQDMGQNENTSAKQKLDVLEERLRAIEGTDVYGKCNTIVLGAKLEHSSKVLSS*
Homology
[Close]
BLAST of MELO3C013300 vs. TrEMBL
Match: A0A061FF52_THECC (RNA-directed DNA polymerase, putative OS=Theobroma cacao GN=TCM_034880 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.9e-09
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 1 

Query: 2   EEQDKDMDKMRQKINNLGEQVSKILELL-SMGKGKVVVD--TTQSSNLVQDT----DDPI 61
           EEQ + MD+M +    + EQ++K++EL+ S+ KGK  ++  T   +   QD+    DDP 
Sbjct: 133 EEQSERMDRMERAREEIREQLAKMMELMMSLSKGKRAIEEPTPLENPPAQDSENQKDDPS 192

Query: 62  YPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPLV------------LGIEHLEA------ 121
           YPP FTP H    Q  + Q  V  ++ Y  PP +            LGI   E       
Sbjct: 193 YPPGFTPPHAQTSQRVHPQ--VMPSIYYNAPPPLGHQPTQGQFGPYLGINPAEPIHVPDL 252

Query: 122 -----QAKIQ-DMGQN-ENTSAKQKLDVLEERLRAIEGTD 130
                Q K++ D  Q  EN   ++K D+LEERLRAIEG D
Sbjct: 253 DDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVD 290

[Close]
BLAST of MELO3C013300 vs. TrEMBL
Match: A0A061EFF5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 1 

Query: 2   EEQDKDMDKMRQKINNLGEQVSKILELL-SMGKGKVVVD--TTQSSNLVQDT----DDPI 61
           EEQ + MD+M +    + EQ++K++EL+ S+ KGK  ++  T   +   QD+    DDP 
Sbjct: 292 EEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPTPSENPPAQDSGNQMDDPS 351

Query: 62  YPPRFTPCHMNVPQSQNTQ-----HYVATNLLY-------------VVPPLVLGIEHLE- 121
           YPPRFTP H    Q  + Q     +Y A   L              + P   + + +L+ 
Sbjct: 352 YPPRFTPPHAQTSQRVHPQVIPPVYYNAPTPLGHQPTHGQFGPYPGINPAEPIHVPYLDD 411

Query: 122 --AQAKIQ-DMGQN-ENTSAKQKLDVLEERLRAIEGTDVYG 133
              Q K++ D  Q  EN   ++K D+LEERLRAIEG D +G
Sbjct: 412 PKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFG 452

[Close]
BLAST of MELO3C013300 vs. TrEMBL
Match: A0A061DPM2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003960 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 55/163 (33.74%), Postives = 80/163 (49.08%), Query Frame = 1 

Query: 2   EEQDKDMDKMRQKINNLGEQVSKILELL-SMGKGKVVVDTTQSSNL--VQDT----DDPI 61
           EEQ + MD+M +    + EQ++K++EL+ S+ KGK  ++    S     QD+    DDP 
Sbjct: 632 EEQGERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPAPSENPPAQDSGNQRDDPS 691

Query: 62  YPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPL-----------------------VLGI 121
           YPP FTP H    Q  + Q  V  ++ Y  PP                        V  +
Sbjct: 692 YPPGFTPPHAQTFQRVHPQ--VMPSIYYNAPPPLGHQPTHGQFGPYPGINPAEPINVPDL 751

Query: 122 EHLEAQAKIQ-DMGQN-ENTSAKQKLDVLEERLRAIEGTDVYG 133
           +  + Q K++ D  Q  EN   ++K D+LEERLRAIEG D +G
Sbjct: 752 DDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFG 792

[Close]
BLAST of MELO3C013300 vs. TrEMBL
Match: A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 1 

Query: 2   EEQDKDMDKMRQKINNLGEQVSKILELL-SMGKGKVVVDTTQSSNL--VQDT----DDPI 61
           EEQ + MD+M +    + EQ++K+++L+ S+ KGK  ++    S     QD+    +DP 
Sbjct: 606 EEQRERMDRMERAQEEMREQLAKMMKLMMSLSKGKRAIEEPAPSENPPAQDSGNQREDPP 665

Query: 62  YPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPLV------------LGIEHLEA------ 121
           YPP FTP H    Q  + Q  V  ++ Y  PP +            LG+  +E       
Sbjct: 666 YPPGFTPPHAQTSQRVHPQ--VMPSVYYNAPPPMGHQPTHGQFGPYLGVNPIEPIHVPDL 725

Query: 122 -----QAKIQ-DMGQN-ENTSAKQKLDVLEERLRAIEGTDVYG 133
                Q K++ D  Q  EN   ++K D+LEERLRAIEG D +G
Sbjct: 726 DDPKEQEKLRKDSSQTRENEKDQKKYDLLEERLRAIEGVDRFG 766

[Close]
BLAST of MELO3C013300 vs. TrEMBL
Match: A0A061E2I6_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao GN=TCM_007834 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 56/163 (34.36%), Postives = 81/163 (49.69%), Query Frame = 1 

Query: 2   EEQDKDMDKMRQKINNLGEQVSKILELL-SMGKGKVVVDTTQSSNL--VQDT----DDPI 61
           EEQ + MD+M +    + EQ++K++EL+ S+ KGK  ++    S     QD+    +DP 
Sbjct: 3   EEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRTIEEPAPSENPPAQDSGNQKEDPP 62

Query: 62  YPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPLV------------LGIEHLEA------ 121
           YPP FTP H    Q  + Q  V  ++ Y  PP +             GI  +E       
Sbjct: 63  YPPGFTPPHAQTSQRVHPQ--VMPSVYYNAPPPMGHQPTHGQFGQYPGINPIEPIHVPDL 122

Query: 122 -----QAKIQ-DMGQN-ENTSAKQKLDVLEERLRAIEGTDVYG 133
                Q K++ D  Q  EN   ++K D+LEERLRAIEG D +G
Sbjct: 123 DDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFG 163

[Close]
BLAST of MELO3C013300 vs. NCBI nr
Match: gi|659131252|ref|XP_008465589.1| (PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 7.6e-58
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 1 

Query: 1   MEEQDKDMDKMRQKINNLGEQVSKILELLSMGKGKVVVDTTQSSNLVQDTDDPIYPPRFT 60
           MEE+DKDMDKMRQ+INNLGEQVSKILELLSMGKGKV VDT QSSN +QDTDD IYPP FT
Sbjct: 1   MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVAVDTAQSSNPIQDTDDHIYPPGFT 60

Query: 61  PCHMNVPQSQNTQHYVATNLLYVVPPLVLGIEHLEAQAKIQDMGQNENTSAKQKLDVLEE 120
           P HMNVPQSQ  QHYV TN LYVVPP+V GIEHLEAQAKIQDMGQNENT AKQKLDVLEE
Sbjct: 61  PYHMNVPQSQTIQHYVPTNPLYVVPPIVPGIEHLEAQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGKCNTIVL 140
           RLRAIEGTDVYG  +   L
Sbjct: 121 RLRAIEGTDVYGNIDATQL 139

[Close]
BLAST of MELO3C013300 vs. NCBI nr
Match: gi|659126456|ref|XP_008463191.1| (PREDICTED: uncharacterized protein LOC103501400 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 113/139 (81.29%), Postives = 123/139 (88.49%), Query Frame = 1 

Query: 1   MEEQDKDMDKMRQKINNLGEQVSKILELLSMGKGKVVVDTTQSSNLVQDTDDPIYPPRFT 60
           MEE+DKDMDKMRQ+I+NLGEQVSKILELLSMGKGKV VDT Q SN +QDTDDPIYPP FT
Sbjct: 1   MEEKDKDMDKMRQEISNLGEQVSKILELLSMGKGKVAVDTAQLSNPIQDTDDPIYPPGFT 60

Query: 61  PCHMNVPQSQNTQHYVATNLLYVVPPLVLGIEHLEAQAKIQDMGQNENTSAKQKLDVLEE 120
           P HMNVPQSQ TQHY+ TN LYVVPP+V G+EHLEAQAKIQDMGQN+NT AKQKLD+LEE
Sbjct: 61  PYHMNVPQSQTTQHYIPTNPLYVVPPIVPGVEHLEAQAKIQDMGQNKNTLAKQKLDILEE 120

Query: 121 RLRAIEGTDVYGKCNTIVL 140
           RLRAIEGTDVYG  +   L
Sbjct: 121 RLRAIEGTDVYGNIDATQL 139

[Close]
BLAST of MELO3C013300 vs. NCBI nr
Match: gi|778730815|ref|XP_011659861.1| (PREDICTED: uncharacterized protein LOC105436306 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 98/127 (77.17%), Postives = 105/127 (82.68%), Query Frame = 1 

Query: 8   MDKMRQKINNLGEQVSKILELLSMGKGKVVVDTTQSSNLVQDTDDPIYPPRFTPCHMNVP 67
           MDKMRQ IN+LGEQVSKILELLS+GKGKVVV+  QSSN VQDT+DPIYPPRF   HMNV 
Sbjct: 1   MDKMRQDINSLGEQVSKILELLSVGKGKVVVEIAQSSNPVQDTNDPIYPPRFMSRHMNVT 60

Query: 68  QSQNTQHYVATNLLYVVPPLVLGIEHLEAQAKIQDMGQNENTSAKQKLDVLEERLRAIEG 127
           QSQ  QHYVA N ++ +PPLV  IE LEAQAKIQDMGQ   TSAKQKLDVLEERLRAIEG
Sbjct: 61  QSQTAQHYVAMNSIFHIPPLVPDIEQLEAQAKIQDMGQMRATSAKQKLDVLEERLRAIEG 120

Query: 128 TDVYGKC 135
           TDV   C
Sbjct: 121 TDVTQLC 127

[Close]
BLAST of MELO3C013300 vs. NCBI nr
Match: gi|659129309|ref|XP_008464622.1| (PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.8e-43
Identity = 90/109 (82.57%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 31  MGKGKVVVDTTQSSNLVQDTDDPIYPPRFTPCHMNVPQSQNTQHYVATNLLYVVPPLVLG 90
           MGKGKV+VDTTQSSN +QDTDDPIYPPRF P HMNVPQSQ TQHYV TN LYVVPP+V G
Sbjct: 1   MGKGKVLVDTTQSSNPIQDTDDPIYPPRFAPYHMNVPQSQTTQHYVPTNPLYVVPPIVQG 60

Query: 91  IEHLEAQAKIQDMGQNENTSAKQKLDVLEERLRAIEGTDVYGKCNTIVL 140
           IEHLEAQAKIQDMGQNENT AKQKLDVLEERL+ IEGTDVYG  +   L
Sbjct: 61  IEHLEAQAKIQDMGQNENTPAKQKLDVLEERLQEIEGTDVYGNIDATQL 109

[Close]
BLAST of MELO3C013300 vs. NCBI nr
Match: gi|659093704|ref|XP_008447672.1| (PREDICTED: uncharacterized protein LOC103490082 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-41
Identity = 95/139 (68.35%), Postives = 102/139 (73.38%), Query Frame = 1 

Query: 1   MEEQDKDMDKMRQKINNLGEQVSKILELLSMGKGKVVVDTTQSSNLVQDTDDPIYPPRFT 60
           MEE+DKDMDKMRQ+INNLGEQVSKILELLSMGKGKVVVDT QSSN +QDTDDPI+PP FT
Sbjct: 1   MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVVVDTIQSSNPIQDTDDPIFPPGFT 60

Query: 61  PCHMNVPQSQNTQHYVATNLLYVVPPLVLGIEHLEAQAKIQDMGQNENTSAKQKLDVLEE 120
           P HMNVPQ +                          QAKIQDMGQNENT AKQKLDVLEE
Sbjct: 61  PYHMNVPQYRT----------------------FGTQAKIQDMGQNENTPAKQKLDVLEE 117

Query: 121 RLRAIEGTDVYGKCNTIVL 140
           RLRAIEGT+VYG  +   L
Sbjct: 121 RLRAIEGTEVYGNIDATQL 117

The following BLAST results are available for this feature:
BLAST of MELO3C013300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FF52_THECC5.9e-0935.63RNA-directed DNA polymerase, putative OS=Theobroma cacao GN=TCM_034880 PE=4 SV=1[more]
A0A061EFF5_THECC7.8e-0934.78Gag-pro-like protein OS=Theobroma cacao GN=TCM_010953 PE=4 SV=1[more]
A0A061DPM2_THECC1.7e-0833.74Uncharacterized protein OS=Theobroma cacao GN=TCM_003960 PE=4 SV=1[more]
A0A061EXR3_THECC2.3e-0833.74Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1[more]
A0A061E2I6_THECC3.9e-0834.36RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
BLAST of MELO3C013300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131252|ref|XP_008465589.1|7.6e-5884.17PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo][more]
gi|659126456|ref|XP_008463191.1|2.2e-5781.29PREDICTED: uncharacterized protein LOC103501400 [Cucumis melo][more]
gi|778730815|ref|XP_011659861.1|1.3e-4477.17PREDICTED: uncharacterized protein LOC105436306 [Cucumis sativus][more]
gi|659129309|ref|XP_008464622.1|1.8e-4382.57PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo][more]
gi|659093704|ref|XP_008447672.1|2.9e-4168.35PREDICTED: uncharacterized protein LOC103490082 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013300T1MELO3C013300T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..28
score: -coord: 108..128
scor