MELO3C013280 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013280
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr1 : 14992360 .. 14993073 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

mRNA sequence

ATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

Coding sequence (CDS)

ATGGTGTTTGCGGTCTTAAGAGATAACCGACTATTCCCCAATAAGAAGAAGTGTGTGATAGCACACTCGAAGATTCAGTATTTTGGGCATCGGATTTCCAACAAGCGGGTAGAAGTTGATGAGGACAAGATCAAAAGCATGGTTAATTGGCCCCAACCCAAGGATATAACTGGATTGAGGGGTTTCCTAGGCTTAACGGGGTATTATAGAAGGTTTGTGAAGGGTTATGGTGAAATTGCAGCCCCATTGACTCAACTCCTACAGAATAATGCATTTAGCAGGAATGAAGAAGCCATAGTAGCTTTTGAACAATTAAAAGCTGCCATGACTATCTTATCAGTCTTAGCCCTACCGGATTGGTCTTTGCCCTTTATTATAGAGACTGATGCATCATACTTTGGTTTGGGGGCCGTGCTGTCACAAAATGGGTATCCAATCGCTTTCTTTAGCCAGAAACTATCCTTGAAAGCACAGACCAAATCTATATATGAAAGGGAGTTGATGGCTGTGGTACTTGCTGTACAGAAGTGGAGACACTACTTAATGGGGAGGAAATTCACCATTATTTTTTATCAAAGAGCTTTGAAGTTCCTATTGGAACAAAGGGAAGTGCAACCTCAGTTTCAAAAGTGGTTAACTAAGCGGCTAGGGTATGACTTCGAAATTCTGTACTCGCCAGGATTGCAAAACAAAGCAACTGATGCTTTGTCTTGA

Protein sequence

MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS*

Homology

[Close]

BLAST of MELO3C013280 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-40
Identity = 91/239 (38.08%), Postives = 137/239 (57.32%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
           +VF  L D  L     KC     +  + GH ++   ++ +  K+K++V++P P     +R
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

Query: 61  GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAF--SRNEEAIVAFEQLKAAMTILSVLALP 120
            FLGLTGYYR+F+  Y +IA P+T  L+      ++  E I AFE+LKA +    +L LP
Sbjct: 443 AFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLP 502

Query: 121 DWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWR 180
           D+   F++ TDAS   LGAVLSQNG+PI+F S+ L+      S  E+EL+A+V A + +R
Sbjct: 503 DFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFR 562

Query: 181 HYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           HYL+GR+F I    + L++L   +E   + ++W  +   Y F+I Y  G +N   DALS
Sbjct: 563 HYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALS 621

[Close]

BLAST of MELO3C013280 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-35
Identity = 82/239 (34.31%), Postives = 134/239 (56.07%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
           +VF  L    L     KC     +  + GH ++   ++ + +KI+++  +P P     ++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 61  GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAF--SRNEEAIVAFEQLKAAMTILSVLALP 120
            FLGLTGYYR+F+  + +IA P+T+ L+ N    + N E   AF++LK  ++   +L +P
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 121 DWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWR 180
           D++  F + TDAS   LGAVLSQ+G+P+++ S+ L+      S  E+EL+A+V A + +R
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

Query: 181 HYLMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           HYL+GR F I    + L +L   ++   +  +W  K   +DF+I Y  G +N   DALS
Sbjct: 564 HYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALS 622

[Close]

BLAST of MELO3C013280 vs. Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.5e-31
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHR--ISNKRVEVDEDKIKSMVNWPQPKDITG 60
           MV  +   ++ + N+KKC     +I Y GHR  IS + V  D  K+++MV WP+PK+ T 
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALP 120
           LRGFLGLTGYYRRFVK YG+I  PLT+LL+ N+    E A +AF+ LK A+T L VLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWSLPFI 126
           D  LPF+
Sbjct: 126 DLKLPFV 132

[Close]

BLAST of MELO3C013280 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-29
Identity = 81/250 (32.40%), Postives = 129/250 (51.60%), Query Frame = 1


Query: 2   VFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRG 61
           V   L D  +  +++K       ++Y G  +S    + D +K+K++  +P+P  +  +R 
Sbjct: 360 VLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRS 419

Query: 62  FLGLTGYYRRFVKGYGEIAAPLTQLL--QNNAFSR----------NEEAIVAFEQLKAAM 121
           FLGL  YYR F+K +  IA P+T +L  +N + S+          NE    AF++L+  +
Sbjct: 420 FLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNIL 479

Query: 122 TILSV-LALPDWSLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELM 181
               V L  PD+  PF + TDAS  G+GAVLSQ G PI   S+ L    Q  +  EREL+
Sbjct: 480 ASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELL 539

Query: 182 AVVLAVQKWRHYLMG-RKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPG 238
           A+V A+ K +++L G R+  I    + L F +  R    + ++W +    ++ ++ Y PG
Sbjct: 540 AIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPG 599

[Close]

BLAST of MELO3C013280 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.8e-29
Identity = 77/255 (30.20%), Postives = 136/255 (53.33%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
           +V A L    L  N +K     +++++ G+ ++   ++ D  K++++   P P  +  L+
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 61  GFLGLTGYYRRFVKGYGEIAAPLTQL-------LQNNAFSR-----NEEAIVAFEQLKAA 120
            FLG+T YYR+F++ Y ++A PLT L       ++++  S+     +E A+ +F  LK+ 
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 121 MTILSVLALPDWSLPFIIETDASYFGLGAVLSQNGY----PIAFFSQKLSLKAQTKSIYE 180
           +    +LA P ++ PF + TDAS + +GAVLSQ+      PIA+ S+ L+   +  +  E
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 181 RELMAVVLAVQKWRHYLMGRKFTIIFY--QRALKFLLEQREVQPQFQKWLTKRLGYDFEI 238
           +E++A++ ++   R YL G   TI  Y   + L F L  R    + ++W  +   Y+ E+
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAG-TIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCEL 539

[Close]

BLAST of MELO3C013280 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.2e-74
Identity = 135/237 (56.96%), Postives = 184/237 (77.64%), Query Frame = 1


Query: 1    MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
            +V  +L+ ++LF NKKKC    ++++Y GH +S K V  D +KI++MV+WP+P+++  LR
Sbjct: 814  LVLELLQQHQLFANKKKCEFGRTELEYLGHVVSGKGVAADPEKIQAMVSWPEPQNVKALR 873

Query: 61   GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
            GFLGLTGYYR+FV+ YGEIA PLT LL+ + F    EA VAF++LK AM+ + VLAL D+
Sbjct: 874  GFLGLTGYYRKFVQRYGEIARPLTALLKKDQFQWTAEATVAFQKLKKAMSTVPVLALVDF 933

Query: 121  SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
            +  F++E+DAS  GLGAVL Q+  P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHY
Sbjct: 934  TEQFVVESDASGTGLGAVLMQSQRPLAYFSQALTERQRLKSVYERELMAIVFAIQKWRHY 993

Query: 181  LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            L+GRKF +   Q++LKFLLEQRE+  ++QKWLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 994  LLGRKFVVRTDQKSLKFLLEQREINMEYQKWLTKLLGFDFEIQYKPGLENKAADALS 1050

[Close]

BLAST of MELO3C013280 vs. TrEMBL
Match: A0A087FZI0_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs71112U000100 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 138/236 (58.47%), Postives = 178/236 (75.42%), Query Frame = 1


Query: 2   VFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRG 61
           V  VL DN+LF N KKC     K+ Y GH IS + V  D  K+++MV+WP P+++  LRG
Sbjct: 614 VLQVLTDNQLFANSKKCQFGSQKVDYLGHVISAEGVAADPAKVQAMVDWPVPRNVKALRG 673

Query: 62  FLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWS 121
           FLGLTGYYR+FVKGYGEIA PLT LL+ + F  +++   AF+ LK AM+ + VLAL D+S
Sbjct: 674 FLGLTGYYRKFVKGYGEIARPLTALLKKDQFQWSQKVEDAFQSLKVAMSTVPVLALVDFS 733

Query: 122 LPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYL 181
           LPF+IE+DAS  GLGAVL Q   PIA+FSQ  + + + KS+YERELMA+V A+QKW+HYL
Sbjct: 734 LPFVIESDASGVGLGAVLMQQKQPIAYFSQAQTERQRLKSVYERELMAIVFAIQKWKHYL 793

Query: 182 MGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           +GRKF +   Q++LKFLLEQRE+  ++Q+WLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 794 LGRKFLVRTDQKSLKFLLEQREINLEYQRWLTKILGFDFEIQYKPGLENKAADALS 849

[Close]

BLAST of MELO3C013280 vs. TrEMBL
Match: A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 140/237 (59.07%), Postives = 180/237 (75.95%), Query Frame = 1


Query: 1    MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
            +V  +L   +LF NKKKC    S I+Y GH IS + V  D  K+++MV+WP PK+I  LR
Sbjct: 788  VVLQILFQQQLFANKKKCQFGSSSIEYLGHVISGEGVSADPSKLQAMVSWPLPKNIKALR 847

Query: 61   GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
            GFLGLTGYYRRFV+GYG IA PLT LL+ + F  +EEA VAFE+LK AM+ + VLAL D+
Sbjct: 848  GFLGLTGYYRRFVQGYGSIAKPLTSLLKKDKFQWSEEATVAFEKLKVAMSTVPVLALVDF 907

Query: 121  SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
            S  F++E+DAS  GLGAVL Q   P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHY
Sbjct: 908  SELFVVESDASGIGLGAVLLQKQKPVAYFSQALTDRQKLKSVYERELMAIVFAIQKWRHY 967

Query: 181  LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            L+GRKF +   Q++LKFLLEQREV  ++Q+WLTK LG++F+I Y PGL+NKA DALS
Sbjct: 968  LLGRKFLVRTDQKSLKFLLEQREVNLEYQQWLTKILGFNFDIHYKPGLENKAADALS 1024

[Close]

BLAST of MELO3C013280 vs. TrEMBL
Match: A0A087HFW3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 136/236 (57.63%), Postives = 183/236 (77.54%), Query Frame = 1


Query: 2    VFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRG 61
            V A+L+ ++LF N+KKC    SK++Y GH +S + V  D +KI++MV+W +P+++  LRG
Sbjct: 809  VLALLQKHQLFANQKKCDFGRSKLEYLGHVVSGQGVAADPEKIQAMVSWSEPQNVKALRG 868

Query: 62   FLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWS 121
            FLGLTGYYR+FV+GYGEIA PLT LL+ + F    EA +AF+QLK AM+ + VLAL D++
Sbjct: 869  FLGLTGYYRKFVQGYGEIARPLTALLKKDQFHWTAEATMAFQQLKKAMSTVPVLALVDFT 928

Query: 122  LPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYL 181
              F++E+DAS  GLGAVL Q   P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHYL
Sbjct: 929  EQFVVESDASGTGLGAVLMQQQRPLAYFSQALTERQRLKSVYERELMAIVFAIQKWRHYL 988

Query: 182  MGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            +GRKF +   Q++LKFLLEQRE+  ++QKWLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 989  LGRKFVVRTDQKSLKFLLEQREINLEYQKWLTKLLGFDFEIQYKPGLENKAADALS 1044

[Close]

BLAST of MELO3C013280 vs. TrEMBL
Match: A0A087H2T8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.8e-73
Identity = 141/237 (59.49%), Postives = 184/237 (77.64%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
           MV +VL++ +L+ NKKKC     +I+Y GH IS   V V+  KI +MV+W +PK+I  LR
Sbjct: 259 MVLSVLQEQQLYANKKKCQFGCKEIEYLGHIISGDGVAVNPQKIHAMVSWLEPKNIKALR 318

Query: 61  GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
           GFLGLTGYYR+FV+GYG+IA PLT LL+ + F  + EA VAF++LK AMT + VLAL D+
Sbjct: 319 GFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEAGVAFQRLKQAMTTVPVLALVDF 378

Query: 121 SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
           S  F+I++DAS  GLGAVL Q   PIAFFSQ L+ + + KS+YERELMA+VLA+Q+WRHY
Sbjct: 379 SELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQKLKSVYERELMAIVLAIQRWRHY 438

Query: 181 LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           L+GRKF +   Q++LKFLLEQREV  ++Q+WLTK LG+DF+I+Y PGL+NKA DALS
Sbjct: 439 LLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPGLENKAADALS 495

[Close]

BLAST of MELO3C013280 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-32
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHR--ISNKRVEVDEDKIKSMVNWPQPKDITG 60
           MV  +   ++ + N+KKC     +I Y GHR  IS + V  D  K+++MV WP+PK+ T 
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALP 120
           LRGFLGLTGYYRRFVK YG+I  PLT+LL+ N+    E A +AF+ LK A+T L VLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWSLPFI 126
           D  LPF+
Sbjct: 126 DLKLPFV 132

[Close]

BLAST of MELO3C013280 vs. NCBI nr
Match: gi|674230743|gb|KFK24528.1| (hypothetical protein AALP_AAs46225U000100, partial [Arabis alpina])

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-73
Identity = 135/237 (56.96%), Postives = 184/237 (77.64%), Query Frame = 1


Query: 1    MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
            +V  +L+ ++LF NKKKC    ++++Y GH +S K V  D +KI++MV+WP+P+++  LR
Sbjct: 814  LVLELLQQHQLFANKKKCEFGRTELEYLGHVVSGKGVAADPEKIQAMVSWPEPQNVKALR 873

Query: 61   GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
            GFLGLTGYYR+FV+ YGEIA PLT LL+ + F    EA VAF++LK AM+ + VLAL D+
Sbjct: 874  GFLGLTGYYRKFVQRYGEIARPLTALLKKDQFQWTAEATVAFQKLKKAMSTVPVLALVDF 933

Query: 121  SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
            +  F++E+DAS  GLGAVL Q+  P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHY
Sbjct: 934  TEQFVVESDASGTGLGAVLMQSQRPLAYFSQALTERQRLKSVYERELMAIVFAIQKWRHY 993

Query: 181  LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            L+GRKF +   Q++LKFLLEQRE+  ++QKWLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 994  LLGRKFVVRTDQKSLKFLLEQREINMEYQKWLTKLLGFDFEIQYKPGLENKAADALS 1050

[Close]

BLAST of MELO3C013280 vs. NCBI nr
Match: gi|674229247|gb|KFK23032.1| (hypothetical protein AALP_AAs71112U000100, partial [Arabis alpina])

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 138/236 (58.47%), Postives = 178/236 (75.42%), Query Frame = 1


Query: 2   VFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRG 61
           V  VL DN+LF N KKC     K+ Y GH IS + V  D  K+++MV+WP P+++  LRG
Sbjct: 614 VLQVLTDNQLFANSKKCQFGSQKVDYLGHVISAEGVAADPAKVQAMVDWPVPRNVKALRG 673

Query: 62  FLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWS 121
           FLGLTGYYR+FVKGYGEIA PLT LL+ + F  +++   AF+ LK AM+ + VLAL D+S
Sbjct: 674 FLGLTGYYRKFVKGYGEIARPLTALLKKDQFQWSQKVEDAFQSLKVAMSTVPVLALVDFS 733

Query: 122 LPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYL 181
           LPF+IE+DAS  GLGAVL Q   PIA+FSQ  + + + KS+YERELMA+V A+QKW+HYL
Sbjct: 734 LPFVIESDASGVGLGAVLMQQKQPIAYFSQAQTERQRLKSVYERELMAIVFAIQKWKHYL 793

Query: 182 MGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           +GRKF +   Q++LKFLLEQRE+  ++Q+WLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 794 LGRKFLVRTDQKSLKFLLEQREINLEYQRWLTKILGFDFEIQYKPGLENKAADALS 849

[Close]

BLAST of MELO3C013280 vs. NCBI nr
Match: gi|674235545|gb|KFK28310.1| (hypothetical protein AALP_AA8G499800 [Arabis alpina])

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 140/237 (59.07%), Postives = 180/237 (75.95%), Query Frame = 1


Query: 1    MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
            +V  +L   +LF NKKKC    S I+Y GH IS + V  D  K+++MV+WP PK+I  LR
Sbjct: 788  VVLQILFQQQLFANKKKCQFGSSSIEYLGHVISGEGVSADPSKLQAMVSWPLPKNIKALR 847

Query: 61   GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
            GFLGLTGYYRRFV+GYG IA PLT LL+ + F  +EEA VAFE+LK AM+ + VLAL D+
Sbjct: 848  GFLGLTGYYRRFVQGYGSIAKPLTSLLKKDKFQWSEEATVAFEKLKVAMSTVPVLALVDF 907

Query: 121  SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
            S  F++E+DAS  GLGAVL Q   P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHY
Sbjct: 908  SELFVVESDASGIGLGAVLLQKQKPVAYFSQALTDRQKLKSVYERELMAIVFAIQKWRHY 967

Query: 181  LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            L+GRKF +   Q++LKFLLEQREV  ++Q+WLTK LG++F+I Y PGL+NKA DALS
Sbjct: 968  LLGRKFLVRTDQKSLKFLLEQREVNLEYQQWLTKILGFNFDIHYKPGLENKAADALS 1024

[Close]

BLAST of MELO3C013280 vs. NCBI nr
Match: gi|674248250|gb|KFK41015.1| (hypothetical protein AALP_AA2G074100 [Arabis alpina])

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 136/236 (57.63%), Postives = 183/236 (77.54%), Query Frame = 1


Query: 2    VFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLRG 61
            V A+L+ ++LF N+KKC    SK++Y GH +S + V  D +KI++MV+W +P+++  LRG
Sbjct: 809  VLALLQKHQLFANQKKCDFGRSKLEYLGHVVSGQGVAADPEKIQAMVSWSEPQNVKALRG 868

Query: 62   FLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDWS 121
            FLGLTGYYR+FV+GYGEIA PLT LL+ + F    EA +AF+QLK AM+ + VLAL D++
Sbjct: 869  FLGLTGYYRKFVQGYGEIARPLTALLKKDQFHWTAEATMAFQQLKKAMSTVPVLALVDFT 928

Query: 122  LPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHYL 181
              F++E+DAS  GLGAVL Q   P+A+FSQ L+ + + KS+YERELMA+V A+QKWRHYL
Sbjct: 929  EQFVVESDASGTGLGAVLMQQQRPLAYFSQALTERQRLKSVYERELMAIVFAIQKWRHYL 988

Query: 182  MGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
            +GRKF +   Q++LKFLLEQRE+  ++QKWLTK LG+DFEI Y PGL+NKA DALS
Sbjct: 989  LGRKFVVRTDQKSLKFLLEQREINLEYQKWLTKLLGFDFEIQYKPGLENKAADALS 1044

[Close]

BLAST of MELO3C013280 vs. NCBI nr
Match: gi|674243677|gb|KFK36442.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 283.9 bits (725), Expect = 2.6e-73
Identity = 141/237 (59.49%), Postives = 184/237 (77.64%), Query Frame = 1


Query: 1   MVFAVLRDNRLFPNKKKCVIAHSKIQYFGHRISNKRVEVDEDKIKSMVNWPQPKDITGLR 60
           MV +VL++ +L+ NKKKC     +I+Y GH IS   V V+  KI +MV+W +PK+I  LR
Sbjct: 634 MVLSVLQEQQLYANKKKCQFGCKEIEYLGHIISGDGVAVNPQKIHAMVSWLEPKNIKALR 693

Query: 61  GFLGLTGYYRRFVKGYGEIAAPLTQLLQNNAFSRNEEAIVAFEQLKAAMTILSVLALPDW 120
           GFLGLTGYYR+FV+GYG+IA PLT LL+ + F  + EA VAF++LK AMT + VLAL D+
Sbjct: 694 GFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEAGVAFQRLKQAMTTVPVLALVDF 753

Query: 121 SLPFIIETDASYFGLGAVLSQNGYPIAFFSQKLSLKAQTKSIYERELMAVVLAVQKWRHY 180
           S  F+I++DAS  GLGAVL Q   PIAFFSQ L+ + + KS+YERELMA+VLA+Q+WRHY
Sbjct: 754 SELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQKLKSVYERELMAIVLAIQRWRHY 813

Query: 181 LMGRKFTIIFYQRALKFLLEQREVQPQFQKWLTKRLGYDFEILYSPGLQNKATDALS 238
           L+GRKF +   Q++LKFLLEQREV  ++Q+WLTK LG+DF+I+Y PGL+NKA DALS
Sbjct: 814 LLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGFDFDIVYKPGLENKAADALS 870

The following BLAST results are available for this feature:

BLAST of MELO3C013280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	5.0e-40	38.08	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	4.8e-35	34.31	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
M860_ARATH	5.5e-31	51.97	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg0...	[more]
POLY_DROME	3.0e-29	32.40	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
POL5_DROME	6.8e-29	30.20	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of MELO3C013280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087G3S6_ARAAL	8.2e-74	56.96	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4...	[more]
A0A087FZI0_ARAAL	1.1e-73	58.47	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs71112U000100 PE=4...	[more]
A0A087GEK8_ARAAL	1.4e-73	59.07	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1	[more]
A0A087HFW3_ARAAL	1.4e-73	57.63	Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1	[more]
A0A087H2T8_ARAAL	1.8e-73	59.49	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]

BLAST of MELO3C013280 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	3.1e-32	51.97	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of MELO3C013280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|674230743\|gb\|KFK24528.1\|	1.2e-73	56.96	hypothetical protein AALP_AAs46225U000100, partial [Arabis alpina]	[more]
gi\|674229247\|gb\|KFK23032.1\|	1.5e-73	58.47	hypothetical protein AALP_AAs71112U000100, partial [Arabis alpina]	[more]
gi\|674235545\|gb\|KFK28310.1\|	2.0e-73	59.07	hypothetical protein AALP_AA8G499800 [Arabis alpina]	[more]
gi\|674248250\|gb\|KFK41015.1\|	2.0e-73	57.63	hypothetical protein AALP_AA2G074100 [Arabis alpina]	[more]
gi\|674243677\|gb\|KFK36442.1\|	2.6e-73	59.49	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013280T1	MELO3C013280T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..237 score: 2.3
None	No IPR available	PANTHER	PTHR24559:SF201	SUBFAMILY NOT NAMED	coord: 1..237 score: 2.3
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 1..224 score: 2.22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013280	Silver-seed gourd	carmeB0201
MELO3C013280	Silver-seed gourd	carmeB0354
MELO3C013280	Silver-seed gourd	carmeB1016
MELO3C013280	Cucumber (Chinese Long) v3	cucmeB549
MELO3C013280	Watermelon (97103) v2	mewmbB179
MELO3C013280	Wax gourd	mewgoB213
MELO3C013280	Cucumber (Gy14) v1	cgymeB120
MELO3C013280	Cucurbita maxima (Rimu)	cmameB092
MELO3C013280	Cucurbita maxima (Rimu)	cmameB462
MELO3C013280	Cucurbita maxima (Rimu)	cmameB511
MELO3C013280	Cucurbita maxima (Rimu)	cmameB565
MELO3C013280	Cucurbita moschata (Rifu)	cmomeB091
MELO3C013280	Cucurbita moschata (Rifu)	cmomeB453
MELO3C013280	Cucurbita moschata (Rifu)	cmomeB505
MELO3C013280	Cucurbita moschata (Rifu)	cmomeB554
MELO3C013280	Wild cucumber (PI 183967)	cpimeB539
MELO3C013280	Cucumber (Chinese Long) v2	cumeB531
MELO3C013280	Watermelon (Charleston Gray)	mewcgB196
MELO3C013280	Watermelon (97103) v1	mewmB239
MELO3C013280	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C013280	Cucurbita pepo (Zucchini)	cpemeB274
MELO3C013280	Cucurbita pepo (Zucchini)	cpemeB610
MELO3C013280	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C013280	Cucumber (Gy14) v2	cgybmeB469