MELO3C013279 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013279
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3/gypsy retrotransposon protein
Locationchr1 : 14991531 .. 14992022 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTTTGGGTTAGGGAAAGACAAATGGTTCTCAAAGGGGATCCTACGCTTATCAAAGCTGAATATTCATTTAAAACCTTGGAAAAAACATGGAAAGAAGAGGACCAAGGGTTTTTAGTTGAGATGCAATTCTGTGAGGTTGAATCCGAAGAAGCCTATGATGAAGAAGTACAAATCAAAGGTGATGAGAAATATCTTTCGATGATCAAAGCTTTGCTAGAAAGATATAGTGACATATTTGAGATGCCTAGAAAACTACCTCCTAAGAGGAGCATTGATCATCACATCCTTACATTGCCCGAGCAAAAACCCATCAACATTAGGCCTTATAAATATGGTCATGCTCAGAAAGAAGAGATAGAAAAACTGGTGACAGAGATGCTCCAAGCGGGGGTGATTAGACCTAGCCGCGACCCCTACTCCAGTCCGATTCTATTAGTAAAGAAATTGATGGAGGGTGGAGATTTTGTGTGGATTATAGGAAGCTGA

mRNA sequence

ATGACGTTTTGGGTTAGGGAAAGACAAATGGTTCTCAAAGGGGATCCTACGCTTATCAAAGCTGAATATTCATTTAAAACCTTGGAAAAAACATGGAAAGAAGAGGACCAAGGGTTTTTAGTTGAGATGCAATTCTGTGAGGTTGAATCCGAAGAAGCCTATGATGAAGAAGTACAAATCAAAGGTGATGAGAAATATCTTTCGATGATCAAAGCTTTGCTAGAAAGATATAGTGACATATTTGAGATGCCTAGAAAACTACCTCCTAAGAGGAGCATTGATCATCACATCCTTACATTGCCCGAGCAAAAACCCATCAACATTAGGCCTTATAAATATGGTCATGCTCAGAAAGAAGAGATAGAAAAACTGGTGACAGAGATGCTCCAAGCGGGGGTGATTAGACCTAGCCGCGACCCCTACTCCAGTCCGATTCTATTAGTAAAGAAATTGATGGAGGGTGGAGATTTTGTGTGGATTATAGGAAGCTGA

Coding sequence (CDS)

ATGACGTTTTGGGTTAGGGAAAGACAAATGGTTCTCAAAGGGGATCCTACGCTTATCAAAGCTGAATATTCATTTAAAACCTTGGAAAAAACATGGAAAGAAGAGGACCAAGGGTTTTTAGTTGAGATGCAATTCTGTGAGGTTGAATCCGAAGAAGCCTATGATGAAGAAGTACAAATCAAAGGTGATGAGAAATATCTTTCGATGATCAAAGCTTTGCTAGAAAGATATAGTGACATATTTGAGATGCCTAGAAAACTACCTCCTAAGAGGAGCATTGATCATCACATCCTTACATTGCCCGAGCAAAAACCCATCAACATTAGGCCTTATAAATATGGTCATGCTCAGAAAGAAGAGATAGAAAAACTGGTGACAGAGATGCTCCAAGCGGGGGTGATTAGACCTAGCCGCGACCCCTACTCCAGTCCGATTCTATTAGTAAAGAAATTGATGGAGGGTGGAGATTTTGTGTGGATTATAGGAAGCTGA

Protein sequence

MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQIKGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEEIEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGGDFVWIIGS*
Homology
[Close]
BLAST of MELO3C013279 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.2e-06
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 69  MIKALLERYSDIFEMPRK-LPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEEIEKLVTE 128
           ++ +LL  +  IFE P   +  + ++   I T   Q PI  + Y Y    + E+E+ + E
Sbjct: 87  ILNSLLGEFPRIFEPPLSGMSVETAVKAEIRT-NTQDPIYAKSYPYPVNMRGEVERQIDE 146

Query: 129 MLQAGVIRPSRDPYSSPILLVKK 151
           +LQ G+IRPS  PY+SPI +V K
Sbjct: 147 LLQDGIIRPSNSPYNSPIWIVPK 168

[Close]
BLAST of MELO3C013279 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.2e-24
Identity = 62/146 (42.47%), Postives = 89/146 (60.96%), Query Frame = 1 

Query: 10  MVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQIKGDEKYLSM 69
           +VLKGDP+L + E S K + +  +   QG  VE       S+ +       +G ++   +
Sbjct: 116 IVLKGDPSLSRIEVSLKAMTRALQHHSQGVWVEXYQTSTTSDLS-------EGVQEVPKI 175

Query: 70  IKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEEIEKLVTEML 129
           +K +L ++  IFE    LPP R IDH I  +P   P+N+RPY+Y H  K EIE+LV EML
Sbjct: 176 VKEVLAQHQQIFEPITXLPPSRDIDHAIQLIPGASPVNVRPYRYPHILKNEIERLVQEML 235

Query: 130 QAGVIRPSRDPYSSPILLVKKLMEGG 156
           +AG++RPS  P+SSP+LLVKK  +GG
Sbjct: 236 EAGIVRPSLSPFSSPVLLVKK-KDGG 253

[Close]
BLAST of MELO3C013279 vs. TrEMBL
Match: A0A0V0IZ28_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 66/150 (44.00%), Postives = 88/150 (58.67%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M F    R + L+GDP +++   S K +    K+ +QGFLVE+   +V   E   +E  I
Sbjct: 371 MKFKDAGRLVSLRGDPAMVRTVVSLKAMTNLLKKGNQGFLVELN--QVTGTE---DEAAI 430

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
              E     I+ LL  Y ++ E    LPP+RS DH I      +P NIRPY+Y H+QK E
Sbjct: 431 TSKE-----IEKLLYDYPEVSEQALALPPRRSWDHAITLQSGAQPPNIRPYRYPHSQKAE 490

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKK 151
           IE+LV EML AG+I+ S  PYSSP+LLVKK
Sbjct: 491 IERLVKEMLAAGIIKTSTSPYSSPVLLVKK 510

[Close]
BLAST of MELO3C013279 vs. TrEMBL
Match: A0A087HNF3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G155400 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           + F V    + LKGDP+L     S K L KT +++ QG +VE    ++  E         
Sbjct: 484 LQFQVNGEWVSLKGDPSLCCTPVSLKALWKTVEQQGQGMVVEFGGMQITDEN-------- 543

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
               K    ++AL++ +  +FE P +LPP R  +H I   P   P+N+RP++Y   QKEE
Sbjct: 544 -WSTKVPQGLRALIKSFQGVFEEPHELPPSRGREHIICLEPGAPPVNVRPFRYPQIQKEE 603

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKK 151
           IE+ V  ML AG++R SR P+SSP+LLVKK
Sbjct: 604 IERQVASMLGAGIVRDSRSPFSSPVLLVKK 624

[Close]
BLAST of MELO3C013279 vs. TrEMBL
Match: A0A087HFW3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 61/151 (40.40%), Postives = 94/151 (62.25%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M F + +  + L+GD  L  A  S K L K+  ++ QG LVE  FC +++E      + +
Sbjct: 539 MRFLLNDEAVGLQGDVGLCCAPISLKALWKSLADQGQGVLVE--FCGLQTE------LLL 598

Query: 61  KGDEKYLS-MIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKE 120
           K  ++ L   +  +LE+++ +FE P+ LPP R  +H I+  P  KP+++RP++Y  AQ+E
Sbjct: 599 KNRKEQLPPQLLEVLEQFAGVFEDPQGLPPSRGKEHSIVLEPNAKPVSVRPFRYPQAQRE 658

Query: 121 EIEKLVTEMLQAGVIRPSRDPYSSPILLVKK 151
           EIEK V  ML AG+I+ S  P+SSP+LLVKK
Sbjct: 659 EIEKQVASMLAAGIIQASGSPFSSPVLLVKK 681

[Close]
BLAST of MELO3C013279 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-21
Identity = 59/150 (39.33%), Postives = 91/150 (60.67%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M F + E  + L+GD  L  A  S K L K+  ++ QG LVE  +C +++E         
Sbjct: 545 MKFMLNEELVKLQGDAGLCCAPISLKALWKSLADQGQGVLVE--YCGLQAELHTQRR--- 604

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
              E+    +  +LE+++ +FE P+ LPP R  +H+I+  P  KP+++RP++Y  AQ+EE
Sbjct: 605 --REQLPHQLLTVLEQFARVFEDPQGLPPSRGKEHNIVLEPNAKPVSVRPFRYPQAQREE 664

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKK 151
           +EK V  ML AG+I+ S  P+SSP+LLVKK
Sbjct: 665 VEKQVASMLAAGLIQASGSPFSSPVLLVKK 687

[Close]
BLAST of MELO3C013279 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 3.3e-51
Identity = 100/155 (64.52%), Postives = 126/155 (81.29%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           MTFW   RQ+VLKGDP+LIKAE S KT+EKTW+++D+GFL+E    E+ +++ Y++  ++
Sbjct: 266 MTFWNEGRQIVLKGDPSLIKAECSLKTIEKTWEDDDRGFLLEWTNFEMTADDGYEKNQEM 325

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
           +GDE  + MI+ LL +Y+DIFE P+ LPPKR ID+ ILTLPEQ+PIN RPYKYGH QKEE
Sbjct: 326 RGDEADIPMIRFLLHQYADIFETPKGLPPKREIDYRILTLPEQRPINARPYKYGHVQKEE 385

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGG 156
           IEKLV EMLQ GVIRPSR PYSSP+LLVKK  +GG
Sbjct: 386 IEKLVAEMLQTGVIRPSRSPYSSPVLLVKK-KDGG 419

[Close]
BLAST of MELO3C013279 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-50
Identity = 100/155 (64.52%), Postives = 123/155 (79.35%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M+FW   RQ++LKGDP+LIKAE S +TLEKTW+E+DQGFL+E    EVE+EE Y  + + 
Sbjct: 266 MSFWNEGRQIILKGDPSLIKAECSLRTLEKTWQEDDQGFLLEWANMEVEAEEIYKTDKKE 325

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
           KGDE  + MI+ LL++Y DIF  P+ LPPKR+IDH ILT+P Q+PIN+RPYKYGH QK E
Sbjct: 326 KGDEANIPMIRFLLQQYVDIFTTPKGLPPKRNIDHRILTMPNQRPINVRPYKYGHVQKGE 385

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGG 156
           IE LV EMLQ G+IRPSR PYSSP+LLVKK  +GG
Sbjct: 386 IENLVAEMLQDGIIRPSRSPYSSPVLLVKK-KDGG 419

[Close]
BLAST of MELO3C013279 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 6.3e-50
Identity = 96/159 (60.38%), Postives = 121/159 (76.10%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M FW    ++VLKGDP LI+AE S KTLEKTW++EDQGFL++ Q  E E+E    +    
Sbjct: 464 MVFWKEGNKVVLKGDPALIRAECSLKTLEKTWEDEDQGFLIDWQDYETENEYKESKTPGQ 523

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
           +GDE+ L MI+ LL +YSD+F++P+ LPPKR++DH I T+P QKPIN+RPYKY H QKE+
Sbjct: 524 QGDEEELPMIQFLLNQYSDVFDIPKMLPPKRAVDHRIFTMPGQKPINVRPYKYDHNQKEK 583

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGGDFVW 160
           IEKLVTEMLQ G+IRPS  P+SSP+LLVKK M  G F W
Sbjct: 584 IEKLVTEMLQTGIIRPSHSPFSSPVLLVKKKMGAGGFAW 622

[Close]
BLAST of MELO3C013279 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-48
Identity = 95/155 (61.29%), Postives = 123/155 (79.35%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           MTF + ++Q +LKGDP+LI+AE S KT+EKTW+E+DQGFL+EMQ  E E +   DE  ++
Sbjct: 492 MTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQNYEAEEDGELDEVQRV 551

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
           KGDE+   MI+ LL++Y+D+FE P+ LPPKR  DH IL +  QKPIN+RPYKYGH QKEE
Sbjct: 552 KGDEEESPMIQVLLQQYTDLFEEPKGLPPKRECDHRILLVTGQKPINVRPYKYGHTQKEE 611

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGG 156
           IEKL++EMLQ G+IRPS  PYSSP+LLV+K  +GG
Sbjct: 612 IEKLISEMLQVGIIRPSHSPYSSPVLLVRK-KDGG 645

[Close]
BLAST of MELO3C013279 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-48
Identity = 97/155 (62.58%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 1   MTFWVRERQMVLKGDPTLIKAEYSFKTLEKTWKEEDQGFLVEMQFCEVESEEAYDEEVQI 60
           M+FW   RQ++LKGDP+LI+AE S +TLEKTW+E+DQGFL+E    EVE+E+ Y  + + 
Sbjct: 435 MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 494

Query: 61  KGDEKYLSMIKALLERYSDIFEMPRKLPPKRSIDHHILTLPEQKPINIRPYKYGHAQKEE 120
           KGDE  + MI+ LL++Y+DIF  P+ LPPKR IDH ILTLP Q  IN+RPYKYGH QK E
Sbjct: 495 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGE 554

Query: 121 IEKLVTEMLQAGVIRPSRDPYSSPILLVKKLMEGG 156
           IEKLV EMLQ G+IRPSR PYS+P+LLVK   +GG
Sbjct: 555 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKN-KDGG 588

The following BLAST results are available for this feature:
BLAST of MELO3C013279 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL5_DROME7.2e-0636.14Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
BLAST of MELO3C013279 vs. TrEMBL
Match NameE-valueIdentityDescription
A5CAG1_VITVI9.2e-2442.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1[more]
A0A0V0IZ28_SOLCH1.1e-2144.00Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
A0A087HNF3_ARAAL1.9e-2139.33Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G155400 PE=4 SV=1[more]
A0A087HFW3_ARAAL5.6e-2140.40Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1[more]
A0A087G3S6_ARAAL9.5e-2139.33Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4... [more]
BLAST of MELO3C013279 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109624|ref|XP_008454797.1|3.3e-5164.52PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
gi|659077522|ref|XP_008439250.1|1.6e-5064.52PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
gi|659093726|ref|XP_008447685.1|6.3e-5060.38PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|1.5e-4861.29PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659094491|ref|XP_008448087.1|3.4e-4862.58PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013279T1MELO3C013279T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 101..150
score: 1.2
NoneNo IPR availablePANTHERPTHR10178GAG/POL/ENV POLYPROTEINcoord: 47..147
score: 6.0
NoneNo IPR availablePANTHERPTHR10178:SF309SUBFAMILY NOT NAMEDcoord: 47..147
score: 6.0
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 74..150
score: 2.33