MELO3C013242 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013242
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr1 : 14656622 .. 14656810 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATGTAGCAACCGAGGCAATAATGGTAGAGATGGAGATGAAGAAAAATCTCTTCATGAAAGTTGTTAAGGATCAAGATCATTCAATCACTACCTCAAGAGATCAAATGAAGACTCTAGAAATTTTTGAGTTGAGTCAAACTCCCATTGTCAAAGTTGGTGATAGAGAGAATACTGTGTTATAG

mRNA sequence

ATGGCAAATGTAGCAACCGAGGCAATAATGGTAGAGATGGAGATGAAGAAAAATCTCTTCATGAAAGTTGTTAAGGATCAAGATCATTCAATCACTACCTCAAGAGATCAAATGAAGACTCTAGAAATTTTTGAGTTGAGTCAAACTCCCATTGTCAAAGTTGGTGATAGAGAGAATACTGTGTTATAG

Coding sequence (CDS)

ATGGCAAATGTAGCAACCGAGGCAATAATGGTAGAGATGGAGATGAAGAAAAATCTCTTCATGAAAGTTGTTAAGGATCAAGATCATTCAATCACTACCTCAAGAGATCAAATGAAGACTCTAGAAATTTTTGAGTTGAGTCAAACTCCCATTGTCAAAGTTGGTGATAGAGAGAATACTGTGTTATAG

Protein sequence

MANVATEAIMVEMEMKKNLFMKVVKDQDHSITTSRDQMKTLEIFELSQTPIVKVGDRENTVL*
Homology
[Close]
BLAST of MELO3C013242 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-07
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 1   MANVATEAIMVEMEMKKNLFMKVVKDQDHSITTSRDQMKTLEIFELSQTPIVKVGDRENT 60
           M +V  EA + EME K N  MKV++++DH I   +DQMK  E  E SQTP+VK  D+   
Sbjct: 88  MVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATDKGKN 147

Query: 61  VL 63
           V+
Sbjct: 148 VV 149

[Close]
BLAST of MELO3C013242 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-06
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 

Query: 1   MANVATEAIMVEMEMKKNLFMKVVKDQDHSITTSRDQMKTLEIFELSQTPIVKVGDRENT 60
           M +V  EA M EME K N  MKVV+++DH I   +DQMK  E  E SQT +VK  D+   
Sbjct: 57  MIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKN 116

Query: 61  V 62
           V
Sbjct: 117 V 117

[Close]
BLAST of MELO3C013242 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-07
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 1   MANVATEAIMVEMEMKKNLFMKVVKDQDHSITTSRDQMKTLEIFELSQTPIVKVGDRENT 60
           M +V  EA + EME K N  MKV++++DH I   +DQMK  E  E SQTP+VK  D+   
Sbjct: 88  MVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATDKGKN 147

Query: 61  VL 63
           V+
Sbjct: 148 VV 149

[Close]
BLAST of MELO3C013242 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 

Query: 1   MANVATEAIMVEMEMKKNLFMKVVKDQDHSITTSRDQMKTLEIFELSQTPIVKVGDRENT 60
           M +V  EA M EME K N  MKVV+++DH I   +DQMK  E  E SQT +VK  D+   
Sbjct: 57  MIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKN 116

Query: 61  V 62
           V
Sbjct: 117 V 117

The following BLAST results are available for this feature:
BLAST of MELO3C013242 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCP6_CUCME6.7e-0746.77Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME2.5e-0649.18Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C013242 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136441|gb|ADN34247.1|9.6e-0746.77ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|3.6e-0649.18retrotransposon gag protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013242T1MELO3C013242T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013242Silver-seed gourdcarmeB1000
MELO3C013242Cucurbita maxima (Rimu)cmameB015
MELO3C013242Cucurbita moschata (Rifu)cmomeB004
MELO3C013242Cucurbita pepo (Zucchini)cpemeB499
MELO3C013242Cucurbita pepo (Zucchini)cpemeB711
MELO3C013242Bottle gourd (USVL1VR-Ls)lsimeB094