MELO3C013213.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013213.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 14834662 .. 14835087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAAGTAATTAATGACTTGACAAATCTGTATCCTATCTAATAGCTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

mRNA sequence

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAACTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

Coding sequence (CDS)

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAACTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

Protein sequence

MNQEVENVGKISEARRIEAQGGIIIRLTQLLDRIEVALRNPRQGEVWNKGVENEEDEDNEILLAGQNPRGKRVLGQGRRRGRREGRGMLPERRVEREYENERREEKWIGGVKLIIPTFDGTTDLEEYL

Homology

[Close]

BLAST of MELO3C013213.2 vs. NCBI nr
Match: KGN47250.1 (hypothetical protein Csa_6G235580 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MN++ +N GKISEA+RIEAQGG I+RLTQ+       LDR+EVALRN  QGEV N+GVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRVLGQGRR 80
          EEDEDNE  LAGQNPRG+RVLGQGRR
Sbjct: 61 EEDEDNETFLAGQNPRGRRVLGQGRR 86

[Close]

BLAST of MELO3C013213.2 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_4G114220 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MNQ+ +N G+ISEARRIEAQGG I+RLTQ+       LDR+ VALRN  QGEV N+GVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRV 74
          E+DEDNE LLA QNP  +RV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of MELO3C013213.2 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 62/136 (45.59%), Postives = 76/136 (55.88%), Query Frame = 0


Query: 1   MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEV-WNKGVE 60
           MNQ+  N G+I+EAR  EAQ G I RL Q+       ++RIE+AL N +  EV  N+GVE
Sbjct: 1   MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61  NEEDEDNEILLAGQNPRGKRVLGQGRRXXXXXXXXXXXXXXXXXXXXXXXXEEKWIGGVK 120
           NEED DN  LLAG +PRG R +G+GR                          EK + GVK
Sbjct: 61  NEED-DNVTLLAGHSPRGGRDVGRGRGRVRRRGREILAPKRIEREYQYERENEKGVWGVK 120

Query: 121 LIIPTFDGTTDLEEYL 129
           L IPTF G +D EEYL
Sbjct: 121 LKIPTFYGRSDPEEYL 135

[Close]

BLAST of MELO3C013213.2 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEV-WNKGVE 60
          MNQ+  N G+I+EAR  EAQ G I RL Q+       ++RI++AL N +  EV  N+GVE
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEEDEDNEILLAGQNPRGKRVLGQGR 79
          NEED DN  LLAG +PRG R +G+GR
Sbjct: 61 NEED-DNVTLLAGHSPRGGRDVGRGR 85

[Close]

BLAST of MELO3C013213.2 vs. NCBI nr
Match: XP_023542108.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 31  LDRIEVALRNPRQGEV-WNKGVENEEDEDNEILLAGQNPRGKRVLGQGRRXXXXXXXXXX 90
           ++RIE+AL N +  EV  N+GVENEED DN  LLAG +PRG R +G+   XXXXXXX   
Sbjct: 132 MERIEIALGNLQGREVLLNEGVENEED-DNVTLLAGHSPRGGRDVGRXXXXXXXXXXEIL 191

Query: 91  XXXXXXXXXXXXXXEEKWIGGVKLIIPTFDGTTDLEEYL 129
                         +EK +GGV L IPTF   +D  EYL
Sbjct: 192 AQKRIEREYPYEREKEKGVGGVNLKIPTFYERSDPYEYL 229

[Close]

BLAST of MELO3C013213.2 vs. TrEMBL
Match: tr|A0A0A0KC00|A0A0A0KC00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MN++ +N GKISEA+RIEAQGG I+RLTQ+       LDR+EVALRN  QGEV N+GVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRVLGQGRR 80
          EEDEDNE  LAGQNPRG+RVLGQGRR
Sbjct: 61 EEDEDNETFLAGQNPRGRRVLGQGRR 86

[Close]

BLAST of MELO3C013213.2 vs. TrEMBL
Match: tr|A0A0A0L0S3|A0A0A0L0S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MNQ+ +N G+ISEARRIEAQGG I+RLTQ+       LDR+ VALRN  QGEV N+GVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRV 74
          E+DEDNE LLA QNP  +RV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

The following BLAST results are available for this feature:

BLAST of MELO3C013213.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47250.1	2.0e-23	72.09	hypothetical protein Csa_6G235580 [Cucumis sativus]	[more]
KGN53741.1	3.6e-17	66.25	hypothetical protein Csa_4G114220 [Cucumis sativus]	[more]
XP_023534142.1	1.7e-14	45.59	uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo]	[more]
XP_022925325.1	2.4e-08	52.33	uncharacterized protein LOC111432615 [Cucurbita moschata]	[more]
XP_023542108.1	6.4e-06	48.48	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C013213.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013213.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013213.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KC00\|A0A0A0KC00_CUCSA	1.3e-23	72.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1	[more]
tr\|A0A0A0L0S3\|A0A0A0L0S3_CUCSA	2.4e-17	66.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013213.2.1	MELO3C013213.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013213.2	Watermelon (97103) v2	medwmbB197
MELO3C013213.2	Wax gourd	medwgoB243
MELO3C013213.2	Cucumber (Gy14) v2	cgybmedB469
MELO3C013213.2	Cucumber (Gy14) v1	cgymedB547
MELO3C013213.2	Cucurbita maxima (Rimu)	cmamedB015
MELO3C013213.2	Cucurbita maxima (Rimu)	cmamedB463
MELO3C013213.2	Cucurbita moschata (Rifu)	cmomedB003
MELO3C013213.2	Cucurbita moschata (Rifu)	cmomedB451
MELO3C013213.2	Cucurbita pepo (Zucchini)	cpemedB591
MELO3C013213.2	Cucurbita pepo (Zucchini)	cpemedB844
MELO3C013213.2	Wild cucumber (PI 183967)	cpimedB527
MELO3C013213.2	Cucumber (Chinese Long) v2	cumedB513
MELO3C013213.2	Bottle gourd (USVL1VR-Ls)	lsimedB203
MELO3C013213.2	Watermelon (Charleston Gray)	medwcgB158
MELO3C013213.2	Watermelon (97103) v1	medwmB184
MELO3C013213.2	Silver-seed gourd	carmedB0076
MELO3C013213.2	Silver-seed gourd	carmedB0442
MELO3C013213.2	Cucumber (Chinese Long) v3	cucmedB540