MELO3C013213 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013213
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Disease resistance protein (TIR-NBS-LRR class) family
Location	chr1 : 13995798 .. 13996223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAAGTAATTAATGACTTGACAAATCTGTATCCTATCTAATAGCTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

mRNA sequence

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAACTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

Coding sequence (CDS)

ATGAATCAAGAAGTGGAAAATGTTGGGAAGATTAGTGAAGCTAGGAGAATAGAAGCACAAGGAGGAATAATTATTCGTTTAACTCAACTATTAGATAGGATAGAGGTAGCTTTAAGGAATCCTCGCCAAGGGGAAGTCTGGAACAAAGGAGTTGAAAATGAAGAGGATGAGGATAACGAAATCCTTTTAGCTGGACAAAATCCAAGAGGGAAAAGAGTGTTAGGCCAAGGTAGAAGAAGAGGAAGAAGAGAGGGAAGGGGCATGTTACCTGAAAGAAGGGTTGAAAGGGAGTATGAAAATGAAAGAAGAGAAGAAAAATGGATAGGAGGAGTGAAGCTCATAATTCCTACATTTGATGGGACAACAGATCTGGAGGAATATTTGTAA

Protein sequence

MNQEVENVGKISEARRIEAQGGIIIRLTQLLDRIEVALRNPRQGEVWNKGVENEEDEDNEILLAGQNPRGKRVLGQGRRRGRREGRGMLPERRVEREYENERREEKWIGGVKLIIPTFDGTTDLEEYL*

Homology

[Close]

BLAST of MELO3C013213 vs. TrEMBL
Match: A0A0A0KC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 1   MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
           MN++ +N GKISEA+RIEAQGG I+RLTQ+       LDR+EVALRN  QGEV N+GVEN
Sbjct: 1   MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61  EEDEDNEILLAGQNPRGKRVLGQGRRRGRREGRGMLPERRVEREYENERRE 105
           EEDEDNE  LAGQNPRG+RVLGQGRRR RR+ RGMLPERRVE E++NERR+
Sbjct: 61  EEDEDNETFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNERRD 111

[Close]

BLAST of MELO3C013213 vs. TrEMBL
Match: A0A0A0L0S3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MNQ+ +N G+ISEARRIEAQGG I+RLTQ+       LDR+ VALRN  QGEV N+GVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRV 74
          E+DEDNE LLA QNP  +RV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of MELO3C013213 vs. NCBI nr
Match: gi|700192046|gb|KGN47250.1| (hypothetical protein Csa_6G235580 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 1   MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
           MN++ +N GKISEA+RIEAQGG I+RLTQ+       LDR+EVALRN  QGEV N+GVEN
Sbjct: 1   MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61  EEDEDNEILLAGQNPRGKRVLGQGRRRGRREGRGMLPERRVEREYENERRE 105
           EEDEDNE  LAGQNPRG+RVLGQGRRR RR+ RGMLPERRVE E++NERR+
Sbjct: 61  EEDEDNETFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNERRD 111

[Close]

BLAST of MELO3C013213 vs. NCBI nr
Match: gi|700198583|gb|KGN53741.1| (hypothetical protein Csa_4G114220 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-18
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MNQEVENVGKISEARRIEAQGGIIIRLTQL-------LDRIEVALRNPRQGEVWNKGVEN 60
          MNQ+ +N G+ISEARRIEAQGG I+RLTQ+       LDR+ VALRN  QGEV N+GVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNEILLAGQNPRGKRV 74
          E+DEDNE LLA QNP  +RV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

The following BLAST results are available for this feature:

BLAST of MELO3C013213 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC00_CUCSA	4.1e-35	72.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G235580 PE=4 SV=1	[more]
A0A0A0L0S3_CUCSA	4.5e-18	66.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G114220 PE=4 SV=1	[more]

BLAST of MELO3C013213 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192046\|gb\|KGN47250.1\|	5.8e-35	72.07	hypothetical protein Csa_6G235580 [Cucumis sativus]	[more]
gi\|700198583\|gb\|KGN53741.1\|	6.5e-18	66.25	hypothetical protein Csa_4G114220 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013213T1	MELO3C013213T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013213	Watermelon (97103) v2	mewmbB213
MELO3C013213	Wax gourd	mewgoB243
MELO3C013213	Cucumber (Gy14) v1	cgymeB546
MELO3C013213	Cucurbita maxima (Rimu)	cmameB015
MELO3C013213	Cucurbita maxima (Rimu)	cmameB403
MELO3C013213	Cucurbita moschata (Rifu)	cmomeB004
MELO3C013213	Cucurbita moschata (Rifu)	cmomeB394
MELO3C013213	Wild cucumber (PI 183967)	cpimeB542
MELO3C013213	Cucumber (Chinese Long) v2	cumeB534
MELO3C013213	Watermelon (Charleston Gray)	mewcgB166
MELO3C013213	Watermelon (97103) v1	mewmB188
MELO3C013213	Cucurbita pepo (Zucchini)	cpemeB499
MELO3C013213	Cucurbita pepo (Zucchini)	cpemeB711
MELO3C013213	Bottle gourd (USVL1VR-Ls)	lsimeB195
MELO3C013213	Cucumber (Gy14) v2	cgybmeB472
MELO3C013213	Silver-seed gourd	carmeB0075
MELO3C013213	Silver-seed gourd	carmeB0439
MELO3C013213	Cucumber (Chinese Long) v3	cucmeB552