MELO3C013208 (gene) Melon (DHL92) v3.5.1

NameMELO3C013208
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative uncharacterized protein Sb08g005410
Locationchr1 : 13862425 .. 13862889 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA

mRNA sequence

ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA

Coding sequence (CDS)

ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA

Protein sequence

MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPGLPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRCFSSSRCSSSIY*
BLAST of MELO3C013208 vs. NCBI nr
Match: gi|659109755|ref|XP_008454860.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 7.8e-34
Identity = 89/142 (62.68%), Postives = 98/142 (69.01%), Query Frame = 1

Query: 1   MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
           MA SP KNA+P K K YKSI LR  FKKVR  +  DD NLHI   S V SAHA  SS   
Sbjct: 29  MAPSPRKNASPVKGKHYKSISLRHPFKKVRCSDATDDSNLHISSASSVQSAHASTSSSHA 88

Query: 61  LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFD--SSDGDDSIVLSKLLHRL 120
             VIVK KV D SPPR TQPSASSSI  S+VSIE V+LD D  SS+ D+SIVLSKLL RL
Sbjct: 89  PSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNSDESIVLSKLLRRL 148

Query: 121 KHGNKSGPSSTPTPTIQGSHSP 141
           K  ++SGP ST  PT QG+ SP
Sbjct: 149 KTMDRSGPLSTLAPTAQGTRSP 170

BLAST of MELO3C013208 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 63/134 (47.01%), Postives = 82/134 (61.19%), Query Frame = 1

Query: 1   MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
           MA SPPK  T +K KRYK IP +  +KK+ R     +   H  +  PV  +HAG SS+PG
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKH 120
             + VKK+V + SPPRT+  S SSS+   +VSIE VVLD DSSD  D++VLS LLHR   
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKSS 281

Query: 121 GNKSGPSSTPTPTI 135
              S P + P  ++
Sbjct: 282 AAPSSPHAFPQASL 295

BLAST of MELO3C013208 vs. NCBI nr
Match: gi|659118726|ref|XP_008459271.1| (PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-17
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 1

Query: 1   MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
           M  + PK  T +K KRYK IP +  +KKVR+  ++ + +    ++SP  S++A  S++P 
Sbjct: 28  MDPTAPKLITSSKGKRYKGIPTKHPYKKVRKSILSGEYST---VSSPAHSSYAERSANPP 87

Query: 61  LPVIVKKKVSDVSPPRTTQPSASSSILGS------KVSIEIVVLDFDSSDGDDSIVLSKL 120
            PV VK++V + S P++  PS SSS+  S      +VS+E VVLD DSSD DD+++LS L
Sbjct: 88  SPVTVKEEVLEFSSPQSVHPSVSSSVPKSLSRPEPRVSVETVVLDSDSSDSDDNVILSTL 147

Query: 121 LHRLKHGNKSGPSSTPTP 133
           LHR +    +  +S   P
Sbjct: 148 LHRTRSARNNQTTSPAKP 162

BLAST of MELO3C013208 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 4.3e-16
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 1

Query: 1   MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
           M  +  K+ T +K KRYK I  +  +KKVR+   + + +    + SP  S+H   S++P 
Sbjct: 28  MDPTASKSTTSSKGKRYKGISTKHPYKKVRKSISSGEYST---VPSPAHSSHVERSANPP 87

Query: 61  LPVIVKKKVSDVSPPRTTQPSASSSILG------SKVSIEIVVLDFDSSDGDDSIVLSKL 120
            PV VK++V + S P++ +PS SSS+         +VS+E VVLDF+SSD DD+++LS L
Sbjct: 88  SPVTVKEEVLEFSSPQSARPSVSSSVSKLPSRPEPRVSVETVVLDFNSSDSDDNVILSTL 147

Query: 121 LHRLKHGNKSGPSSTPTPTIQGSHSP 141
           LHR +    +  +S   P   G  SP
Sbjct: 148 LHRTRSTRSNQTTSLIKPQASGGVSP 170

BLAST of MELO3C013208 vs. NCBI nr
Match: gi|659126154|ref|XP_008463038.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 1

Query: 1   MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
           M ++  K+ T +K KRYK IP + L+KKVR+  +    N  +P  SP  S++A    +P 
Sbjct: 1   MDTAAAKSTTFSKGKRYKGIPTKHLYKKVRK-SIPSGENSAVP--SPEHSSNAERLENPP 60

Query: 61  LPVIVKKKVSDVSPPRTTQPSASSSILGS------KVSIEIVVLDFDSSDGDDSIVLSKL 120
            PV VK++V + S P++  PS S SI  S      +VS+E V+LD DSS+ +D+IVLS L
Sbjct: 61  SPVTVKEEVLEFSSPQSALPSVSLSIPKSSSRPEPRVSVETVILDSDSSNSEDNIVLSTL 120

Query: 121 LHRLKHGNKSGPSSTPTPTIQGSHSP 141
           LHR +    +  +S   P   G  SP
Sbjct: 121 LHRTRSVRSNQTASPAKPQASGGVSP 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659109755|ref|XP_008454860.1|7.8e-3462.68PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659082052|ref|XP_008441642.1|1.6e-2347.01PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659118726|ref|XP_008459271.1|8.6e-1739.86PREDICTED: uncharacterized protein LOC103498446 [Cucumis melo][more]
gi|659114605|ref|XP_008457140.1|4.3e-1637.67PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo][more]
gi|659126154|ref|XP_008463038.1|2.1e-1539.73PREDICTED: putative protein TPRXL [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013208T1MELO3C013208T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None